Moc02g05840 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc02g05840
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	SYP124 protein
Location	chr2: 4212631 .. 4214643 (+)
RNA-Seq Expression	Moc02g05840
Synteny	Moc02g05840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACCTTAGCGGCTGCTGCAGTTCGTCAAGCCAGAGCCCTAACTCGAGTCTCCTCTCCTCAATCAACCGCGACCCTTATTCACCGCCGCGGTCTCGCTGGCGCTGCTGGTAAGTTTCTTCTGTCGATTTCATTTTTATGCAATTAGATCACCGGCTGAAAGTCATCCAGTTTTCGGGATTGTTTAATTTTCGTTAGCTGGTGAAATGCTTGGTATTTCATTTCAAAATGAACATCGCGTCCCCCAATTCCTACCGTGTTCTGCTTTTAGGTTTAACTCCTTAGTATTTCCCAGACATTGAATGATCTAATGATCGTGGAAATTTGAGATGAAGGTTTGAATTATGTCTACTTTCTGGAATGCGTTTTACCCAAAAATTTGAAGCGTACGTAGATTTCGCTGTTATTCCCAGAGAACGAGGGTTGCTTGTATATAATTAAAATGGGAATACTGCAAACTGACTTAGTCACCTTAATTGGGCAATGAAAATTTTTCCATGTTATAAAAAGATTGATTTTTTTCCTCGCACATAATTACCTATTATCTGGTTCAATGTGTATGTTGAAGAAAAAGACGGAAACATTAAAAATAAAACAAGTTTGAATTTTCAGATGCGAAGTAGTTTTTGATTTCGCAGTTGCATATGTTAGTTGCTTTGCTTTTCTATTGGGCAATAAGTTCTTTCACACCGTATTCCACCACTTCATTGAGTTTTTGATGGAGATATTGCTAATTTGCAAAAACTTAGTTTGCTAATATTTGAAAGATAGAACAATACCATGATATACCTGAGTTGTAATAATAATATATTAGTTTCCCAAAGAATAACCTGCATGCTGAACGGAACACAGAAAACCACTTTAGTCAGATTATGGTTAGTAAAACTACTCTTAGTGGGCTAAAAGTGATGCAATTGAACATATAGTGTTCTTTAAGGGTTTGTTTACAAGAATACACCCTACAGAGGCATGTGAACTCTGTTTGTAGTTCCTTTTGTAATGCTCGTGTTGGGAGGAAGACGAATGAATTATCTTTTTGCTTTTTAGTTTGACTATCTTTGTTGATATTTGCAGACCACCATGGACCACCGAAGGTTAACTGTTGGAAAGATCCTATGAGCCCATCTAAATGGAAGGAAGAGCATGTGAGACTTATCCTCTAATACAGCACTATTAGCTTCTTCTTCTTCTTATTCTTCTTCTTTTATTTTACTGACCCCTATTCTCTCATCAAGTAGCATGTTTTAAGAATGAGACTGAAAAAAATGTAACTTTTCTCGACCTTCTAACCAGTGCGTCTCTTAAACTTCTAATCAACTCAACCACAAATTTGATTTTATCGGTTAAGACTTCTGTTTGTACTCCACATTTTATGTAGTTTTGTCACTTGTAATGTTAGGGTTAGACTTATCTTATTGATTTAGCTATAATTTAGAATTTATGGGTTCTATTTTTCTTTAGAGCTAAATGAAACTGTTCATCTCACTTTATTACTTGTTCTCTTTGCTTTGCATACTATCTGAAGTTGAAATTCCTAATACCTTTAAATTAGAATACACTGAAACTTATCTCTTATGTGTACATGCCCTCTTCTCCTAGAGTGTTCTTCTTGTTGCGAAGAATAAATAAACAATGACCTAATTATCATACTTGTGCTTTATTTAATTATTGTTTATTCTTGTCTCTTTCAAATAATGTTTACTAATGAGCAAATACAACTTGTTCTGATGAGATTGTAAATTTTTGCAGTTTGTGATTGTCTCTCTATCGGGATGGGGCCTACTCTTCTTTGGAGGGTACAAGTTCTTTACCAGGGGCAAAGGAAAGAAGGAAGAGGTACTTCCACACTTATTATCTGTGCGCTCTTAATTCTTGAAAACCATTTGCAAGATTTTACAGGTGCTGTTAACTGAATATTATTTGGCAGCCGTTGATCAGCTTTGACTTGTTTTTACTTCTATCTTGGAACAAATTTTTTACGCCTCTTATTTCTGAGGGAATGTCACCTTAA

mRNA sequence

ATGGCTACCTTAGCGGCTGCTGCAGTTCGTCAAGCCAGAGCCCTAACTCGAGTCTCCTCTCCTCAATCAACCGCGACCCTTATTCACCGCCGCGGTCTCGCTGGCGCTGCTGACCACCATGGACCACCGAAGGTTAACTGTTGGAAAGATCCTATGAGCCCATCTAAATGGAAGGAAGAGCATTTTGTGATTGTCTCTCTATCGGGATGGGGCCTACTCTTCTTTGGAGGGTACAAGTTCTTTACCAGGGGCAAAGGAAAGAAGGAAGAGCCGTTGATCAGCTTTGACTTGTTTTTACTTCTATCTTGGAACAAATTTTTTACGCCTCTTATTTCTGAGGGAATGTCACCTTAA

Coding sequence (CDS)

ATGGCTACCTTAGCGGCTGCTGCAGTTCGTCAAGCCAGAGCCCTAACTCGAGTCTCCTCTCCTCAATCAACCGCGACCCTTATTCACCGCCGCGGTCTCGCTGGCGCTGCTGACCACCATGGACCACCGAAGGTTAACTGTTGGAAAGATCCTATGAGCCCATCTAAATGGAAGGAAGAGCATTTTGTGATTGTCTCTCTATCGGGATGGGGCCTACTCTTCTTTGGAGGGTACAAGTTCTTTACCAGGGGCAAAGGAAAGAAGGAAGAGCCGTTGATCAGCTTTGACTTGTTTTTACTTCTATCTTGGAACAAATTTTTTACGCCTCTTATTTCTGAGGGAATGTCACCTTAA

Protein sequence

MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKVNCWKDPMSPSKWKEEHFVIVSLSGWGLLFFGGYKFFTRGKGKKEEPLISFDLFLLLSWNKFFTPLISEGMSP

Homology

[Close]

BLAST of Moc02g05840 vs. NCBI nr
Match: KAA0047889.1 (uncharacterized protein E6C27_scaffold133G001630 [Cucumis melo var. makuwa])

HSP 1 Score: 191.0 bits (484), Expect = 5.6e-45
Identity = 95/119 (79.83%), Postives = 103/119 (86.55%), Query Frame = 0


Query: 1   MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKVNCWKDPMSPSKWKEE 60
           MATLAAAAVRQARAL RVSSPQSTA LIH+RGLAGAADHHGPPKVNCW+DPMSPSKWKEE
Sbjct: 1   MATLAAAAVRQARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60

Query: 61  HFVIVSLSGWGLLFFGGYKFFTRGKGKKEEPLISFDLFLL-LSWNKFFTPLI-SEGMSP 118
           HFV+VSLSGWGLL FGGYKFFTRGKG K+E  +SF+LF +  S N  F P I  EGM+P
Sbjct: 61  HFVLVSLSGWGLLIFGGYKFFTRGKGNKDELWVSFELFTISTSVNNLFIPFIFEEGMAP 119

[Close]

BLAST of Moc02g05840 vs. NCBI nr
Match: XP_022140380.1 (uncharacterized protein LOC111011068 [Momordica charantia])

HSP 1 Score: 189.1 bits (479), Expect = 2.1e-44
Identity = 91/93 (97.85%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKVNCWKDPMSPSKWKEE 60
          MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKVNCWKDPMSPSKWKEE
Sbjct: 1  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKVNCWKDPMSPSKWKEE 60

Query: 61 HFVIVSLSGWGLLFFGGYKFFTRGKGKKEEPLI 94
          HFVIVSLSGWGLLFFGGYKFFTRGKGKKEE L+
Sbjct: 61 HFVIVSLSGWGLLFFGGYKFFTRGKGKKEEKLV 93

[Close]

BLAST of Moc02g05840 vs. NCBI nr
Match: XP_038900519.1 (uncharacterized protein LOC120087716 [Benincasa hispida])

HSP 1 Score: 182.6 bits (462), Expect = 2.0e-42
Identity = 87/93 (93.55%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKVNCWKDPMSPSKWKEE 60
          MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHG PKVNCW+DPMSPSKWKEE
Sbjct: 1  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGSPKVNCWQDPMSPSKWKEE 60

Query: 61 HFVIVSLSGWGLLFFGGYKFFTRGKGKKEEPLI 94
          HFVIVSLSGWGLLFFGGYKFFTRGKGKK+E ++
Sbjct: 61 HFVIVSLSGWGLLFFGGYKFFTRGKGKKDEKIV 93

[Close]

BLAST of Moc02g05840 vs. NCBI nr
Match: KAG7034933.1 (hypothetical protein SDJN02_01726, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 177.9 bits (450), Expect = 4.9e-41
Identity = 85/94 (90.43%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 1  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKVNCWKDPMSPSKWKEE 60
          MATLAA AVRQARALTRVSSPQST+TLI RRGLAGAADHHGPPKVNCW+DPMSPSKWKEE
Sbjct: 1  MATLAATAVRQARALTRVSSPQSTSTLIQRRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60

Query: 61 HFVIVSLSGWGLLFFGGYKFFTRGKGKKEEPLIS 95
          HFVIVSLSGWGLLF+GGYKFFT GKGKK+E L+S
Sbjct: 61 HFVIVSLSGWGLLFYGGYKFFTGGKGKKDEVLLS 94

[Close]

BLAST of Moc02g05840 vs. NCBI nr
Match: KAG7010698.1 (hypothetical protein SDJN02_27494 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 177.6 bits (449), Expect = 6.4e-41
Identity = 85/92 (92.39%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKVNCWKDPMSPSKWKEE 60
          MATLAAAA RQARALTRVSSPQS ATLI RRGLAGAADHHGPPKVNCW DPMSPSKWKEE
Sbjct: 1  MATLAAAAARQARALTRVSSPQSAATLIQRRGLAGAADHHGPPKVNCWSDPMSPSKWKEE 60

Query: 61 HFVIVSLSGWGLLFFGGYKFFTRGKGKKEEPL 93
          HFVIVSLSGWGLLFFGGYKFFTRGKGKK+E +
Sbjct: 61 HFVIVSLSGWGLLFFGGYKFFTRGKGKKDEEI 92

[Close]

BLAST of Moc02g05840 vs. ExPASy TrEMBL
Match: A0A5A7U364 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001630 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.7e-45
Identity = 95/119 (79.83%), Postives = 103/119 (86.55%), Query Frame = 0


Query: 1   MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKVNCWKDPMSPSKWKEE 60
           MATLAAAAVRQARAL RVSSPQSTA LIH+RGLAGAADHHGPPKVNCW+DPMSPSKWKEE
Sbjct: 1   MATLAAAAVRQARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60

Query: 61  HFVIVSLSGWGLLFFGGYKFFTRGKGKKEEPLISFDLFLL-LSWNKFFTPLI-SEGMSP 118
           HFV+VSLSGWGLL FGGYKFFTRGKG K+E  +SF+LF +  S N  F P I  EGM+P
Sbjct: 61  HFVLVSLSGWGLLIFGGYKFFTRGKGNKDELWVSFELFTISTSVNNLFIPFIFEEGMAP 119

[Close]

BLAST of Moc02g05840 vs. ExPASy TrEMBL
Match: A0A6J1CEY6 (uncharacterized protein LOC111011068 OS=Momordica charantia OX=3673 GN=LOC111011068 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.0e-44
Identity = 91/93 (97.85%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKVNCWKDPMSPSKWKEE 60
          MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKVNCWKDPMSPSKWKEE
Sbjct: 1  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKVNCWKDPMSPSKWKEE 60

Query: 61 HFVIVSLSGWGLLFFGGYKFFTRGKGKKEEPLI 94
          HFVIVSLSGWGLLFFGGYKFFTRGKGKKEE L+
Sbjct: 61 HFVIVSLSGWGLLFFGGYKFFTRGKGKKEEKLV 93

[Close]

BLAST of Moc02g05840 vs. ExPASy TrEMBL
Match: A0A6J1FYP0 (uncharacterized protein LOC111448907 OS=Cucurbita moschata OX=3662 GN=LOC111448907 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.3e-41
Identity = 85/93 (91.40%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 1  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKVNCWKDPMSPSKWKEE 60
          MATLAAAA RQARALTRVSSPQS ATLI RRGLAGAADHHGPPKVNCW DPMSPSKWKEE
Sbjct: 1  MATLAAAAARQARALTRVSSPQSAATLIQRRGLAGAADHHGPPKVNCWSDPMSPSKWKEE 60

Query: 61 HFVIVSLSGWGLLFFGGYKFFTRGKGKKEEPLI 94
          HFVIVSLSGWGLLFFGGYKFFT GKGKK+E L+
Sbjct: 61 HFVIVSLSGWGLLFFGGYKFFTGGKGKKDEKLV 93

[Close]

BLAST of Moc02g05840 vs. ExPASy TrEMBL
Match: A0A1S3BJS2 (uncharacterized protein LOC103490467 OS=Cucumis melo OX=3656 GN=LOC103490467 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.6e-40
Identity = 81/93 (87.10%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKVNCWKDPMSPSKWKEE 60
          MATLAAAAVRQARAL RVSSPQSTA LIH+RGLAGAADHHGPPKVNCW+DPMSPSKWKEE
Sbjct: 1  MATLAAAAVRQARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60

Query: 61 HFVIVSLSGWGLLFFGGYKFFTRGKGKKEEPLI 94
          HFV+VSLSGWG+L FGGYKFFTRGKG K+E ++
Sbjct: 61 HFVLVSLSGWGVLIFGGYKFFTRGKGNKDEKIV 93

[Close]

BLAST of Moc02g05840 vs. ExPASy TrEMBL
Match: A0A6J1I3K1 (uncharacterized protein LOC111469597 OS=Cucurbita maxima OX=3661 GN=LOC111469597 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.4e-40
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKVNCWKDPMSPSKWKEE 60
          MATLAA AVRQARALTR SSPQSTATLI RRGLAGAADHHGPPKVNCW+DPMSPSKWKEE
Sbjct: 1  MATLAATAVRQARALTRASSPQSTATLIQRRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60

Query: 61 HFVIVSLSGWGLLFFGGYKFFTRGKGKKEE 91
          HFVIVSLSGWGLLF+GGYKFFT GKGKK+E
Sbjct: 61 HFVIVSLSGWGLLFYGGYKFFTGGKGKKDE 90

[Close]

BLAST of Moc02g05840 vs. TAIR 10
Match: AT2G20820.1 (unknown protein; Has 44 Blast hits to 44 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 95.9 bits (237), Expect = 2.3e-20
Identity = 49/92 (53.26%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 6  AAAVRQARALTRVSSPQ---STATLIHRRGLAGAADHHGPPKVNCWKDPMSPSKWKEEHF 65
          A+  R+A +L ++ S +     A++  RR LAGAADHHG  KV+ WK P +P  WKEEHF
Sbjct: 2  ASFARRAMSLAQIPSARISSGAASIGQRRCLAGAADHHGSTKVDFWKQPTNPGNWKEEHF 61

Query: 66 VIVSLSGWGLLFFGGYKFFTRGKGKKEEPLIS 95
          V++SLSGWGLLF+ GYK  T   GKKE P+ S
Sbjct: 62 VLISLSGWGLLFYSGYKLAT--GGKKETPVES 91

[Close]

BLAST of Moc02g05840 vs. TAIR 10
Match: AT2G20820.2 (unknown protein; Has 36 Blast hits to 36 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.8 bits (138), Expect = 6.9e-09
Identity = 28/61 (45.90%), Postives = 40/61 (65.57%), Query Frame = 0


Query: 6  AAAVRQARALTRVSSPQ---STATLIHRRGLAGAADHHGPPKVNCWKDPMSPSKWKEEHF 64
          A+  R+A +L ++ S +     A++  RR LAGAADHHG  KV+ WK P +P  WKEEH+
Sbjct: 2  ASFARRAMSLAQIPSARISSGAASIGQRRCLAGAADHHGSTKVDFWKQPTNPGNWKEEHW 61

The following BLAST results are available for this feature:

BLAST of Moc02g05840 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047889.1	5.6e-45	79.83	uncharacterized protein E6C27_scaffold133G001630 [Cucumis melo var. makuwa]	[more]
XP_022140380.1	2.1e-44	97.85	uncharacterized protein LOC111011068 [Momordica charantia]	[more]
XP_038900519.1	2.0e-42	93.55	uncharacterized protein LOC120087716 [Benincasa hispida]	[more]
KAG7034933.1	4.9e-41	90.43	hypothetical protein SDJN02_01726, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7010698.1	6.4e-41	92.39	hypothetical protein SDJN02_27494 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Moc02g05840 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc02g05840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U364	2.7e-45	79.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1CEY6	1.0e-44	97.85	uncharacterized protein LOC111011068 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1FYP0	5.3e-41	91.40	uncharacterized protein LOC111448907 OS=Cucurbita moschata OX=3662 GN=LOC1114489...	[more]
A0A1S3BJS2	2.6e-40	87.10	uncharacterized protein LOC103490467 OS=Cucumis melo OX=3656 GN=LOC103490467 PE=...	[more]
A0A6J1I3K1	3.4e-40	92.22	uncharacterized protein LOC111469597 OS=Cucurbita maxima OX=3661 GN=LOC111469597...	[more]

BLAST of Moc02g05840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20820.1	2.3e-20	53.26	unknown protein; Has 44 Blast hits to 44 proteins in 13 species: Archae - 0; Bac...	[more]
AT2G20820.2	6.9e-09	45.90	unknown protein; Has 36 Blast hits to 36 proteins in 10 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35292:SF8	SUBFAMILY NOT NAMED	coord: 1..93
None	No IPR available	PANTHER	PTHR35292	EXPRESSED PROTEIN	coord: 1..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc02g05840.1	Moc02g05840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane