Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCAATTCCTATCCACCAGTCAACTGGAAGCTTCGTCCGCGGCCACTCCGATCAGTCCCACCTCCTCACTCCGCCGGGAATCTCTCCGATCACCGCCAGAACGACGGCGCCGAGCCACTCGATGCATCCGAATCCGTGCTTCTTCAGGCTCCGCATAAACCCGGCGTCTCCAGCGGCCGGCGGCGCGAGCATGGGCTGCAGGTAAGCCAAGGCGGCGTGCTTGACGAGTGGGTTCTTGATCGGAAGCTCGACGGAGCTGGAGAAGGGCGAGGCGGCAGAGGGCGGCGGCGGAGGTGTGTCCGGCAAGAGGTCCTTGAGGCTGGTGTAGGATTGGAGGGTGGTCATTTCGATGTGGTTGGAGAAATCCAGGTCCGGTGCGCTCCGGCCATTGGGGGAGAGGAAAGTGGGAGAGTGAGAGTGGGAATTAATGGGAGAAGATTCCATGGTTGA mRNA sequence
ATGGTCAATTCCTATCCACCAGTCAACTGGAAGCTTCGTCCGCGGCCACTCCGATCAGTCCCACCTCCTCACTCCGCCGGGAATCTCTCCGATCACCGCCAGAACGACGGCGCCGAGCCACTCGATGCATCCGAATCCGTGCTTCTTCAGGCTCCGCATAAACCCGGCGTCTCCAGCGGCCGGCGGCGCGAGCATGGGCTGCAGGTAAGCCAAGGCGGCGTGCTTGACGAGTGGGTTCTTGATCGGAAGCTCGACGGAGCTGGAGAAGGGCGAGGCGGCAGAGGGCGGCGGCGGAGGTGTGTCCGGCAAGAGGTCCTTGAGGCTGGTGTAGGATTGGAGGGTGGTCATTTCGATGTGGTTGGAGAAATCCAGGTCCGGTGCGCTCCGGCCATTGGGGGAGAGGAAAGTGGGAGAGTGAGAGTGGGAATTAATGGGAGAAGATTCCATGGTTGA Coding sequence (CDS)
ATGGTCAATTCCTATCCACCAGTCAACTGGAAGCTTCGTCCGCGGCCACTCCGATCAGTCCCACCTCCTCACTCCGCCGGGAATCTCTCCGATCACCGCCAGAACGACGGCGCCGAGCCACTCGATGCATCCGAATCCGTGCTTCTTCAGGCTCCGCATAAACCCGGCGTCTCCAGCGGCCGGCGGCGCGAGCATGGGCTGCAGGTAAGCCAAGGCGGCGTGCTTGACGAGTGGGTTCTTGATCGGAAGCTCGACGGAGCTGGAGAAGGGCGAGGCGGCAGAGGGCGGCGGCGGAGGTGTGTCCGGCAAGAGGTCCTTGAGGCTGGTGTAGGATTGGAGGGTGGTCATTTCGATGTGGTTGGAGAAATCCAGGTCCGGTGCGCTCCGGCCATTGGGGGAGAGGAAAGTGGGAGAGTGAGAGTGGGAATTAATGGGAGAAGATTCCATGGTTGA Protein sequence
MVNSYPPVNWKLRPRPLRSVPPPHSAGNLSDHRQNDGAEPLDASESVLLQAPHKPGVSSGRRREHGLQVSQGGVLDEWVLDRKLDGAGEGRGGRGRRRRCVRQEVLEAGVGLEGGHFDVVGEIQVRCAPAIGGEESGRVRVGINGRRFHG
Homology
BLAST of Moc02g03920 vs. NCBI nr
Match:
KGN62004.2 (hypothetical protein Csa_005914 [Cucumis sativus])
HSP 1 Score: 85.5 bits (210), Expect = 4.3e-13
Identity = 51/88 (57.95%), Postives = 62/88 (70.45%), Query Frame = 0
Query: 35 NDGAEPLDASESVLLQAPHKPGVSSGRRREHGLQVSQGGVLDEWVLDRKLDGAGEGRGGR 94 +DG EPLDA+++VLL+ K V G EHGL+V +GGV D+ VLD +L G G GG Sbjct: 2 DDGGEPLDATKTVLLEDTEKGRVGGGGWGEHGLKVGEGGVFDKRVLDGEL-VEGWGGGGW 61 Query: 95 GRRRRCVRQEVLEAGVGLEGGHFDVVGE 123 GRRR V +EV EAGVGL+ GHFDVVGE Sbjct: 62 GRRRG-VGEEVFEAGVGLKRGHFDVVGE 87
The following BLAST results are available for this feature:
Match Name E-value Identity Description
KGN62004.2 4.3e-13 57.95 hypothetical protein Csa_005914 [Cucumis sativus] [more]
Match Name E-value Identity Description
Match Name E-value Identity Description
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
A T G G T C A A T T C C T A T C C A C C A G T C A A C T G G A A G C T T C G T C C G C G G C C A C T C C G A T C A G T C C C A C C T C C T C A C T C C G C C G G G A A T C T C T C C G A T C A C C G C C A G A A C G A C G G C G C C G A G C C A C T C G A T G C A T C C G A A T C C G T G C T T C T T C A G G C T C C G C A T A A A C C C G G C G T C T C C A G C G G C C G G C G G C G C G A G C A T G G G C T G C A G G T A A G C C A A G G C G G C G T G C T T G A C G A G T G G G T T C T T G A T C G G A A G C T C G A C G G A G C T G G A G A A G G G C G A G G C G G C A G A G G G C G G C G G C G G A G G T G T G T C C G G C A A G A G G T C C T T G A G G C T G G T G T A G G A T T G G A G G G T G G T C A T T T C G A T G T G G T T G G A G A A A T C C A G G T C C G G T G C G C T C C G G C C A T T G G G G G A G A G G A A A G T G G G A G A G T G A G A G T G G G A A T T A A T G G G A G A A G A T T C C A T G G T T G A 50 100 150 200 250 300 350 400 450 Score = Sequence mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..69
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category
Term Accession
Term Name
biological_process
GO:0000045
autophagosome assembly
cellular_component
GO:0000421
autophagosome membrane