Moc02g03250 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc02g03250
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	ABC transporter domain-containing protein
Location	chr2: 2447584 .. 2448210 (-)
RNA-Seq Expression	Moc02g03250
Synteny	Moc02g03250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTAATGTGGAAACTGACCTTGGCATGCAAAATGGCCGTTTTGGCGAAGAAGATTCAAGTGGTAATACAGCGTAAAAACCAAGGCCGGTTCAGTCCACAGAGAAATATAGAGCAGGTTAAACTTCTTCGCAACCTTCGACGGCCACACGAAGAACGTGTCCGCAATCAGACACGTCACCGGAGCCTCTCCTCGCGACGACGCCGTCTTCACGATTCTCTCCACCTCCTCTTCCACGTGGGCCGAAAACACGTGCAGCAGCGACCTCATGAACTGGTCGTGGTTCAGGGACCGGTCGAACCCAACGGGGAGGCCGTCGGAGATGGTGCTGTAGTGGACGTCGAGGCCGGACTTCCGTACGCCGGAGAAGATATCGCCGTCCACGTCGGCGGAGTGGGCGTTGGAGGTCTGGTGGTGGATGGCGTGGGTGTTGACGAAAGAAATGGTGAAGCCACGGGAGGCCAGGTGGGTGGCCAGGTGGACGGAGGGGATGACGTGGCCCTGGAGAGGGTACGGAATGAAAATGGCGTGGGGCCTTTGGCTTTGCCGGTCGGATTCTGGGGCCATTTTTTTGGGTGTTGTGTTGTGGAGGCACAGATCAAGAACAAAATCACAACTACTTAA

mRNA sequence

ATGAAATTAATGTGGAAACTGACCTTGGCATGCAAAATGGCCGTTTTGGCGAAGAAGATTCAAGTGGTAATACAGCGTAAAAACCAAGGCCGGTTCAGTCCACAGAGAAATATAGAGCAGGTTAAACTTCTTCGCAACCTTCGACGGCCACACGAAGAACGTGTCCGCAATCAGACACGTCACCGGAGCCTCTCCTCGCGACGACGCCGTCTTCACGATTCTCTCCACCTCCTCTTCCACGTGGGCCGAAAACACGTGCAGCAGCGACCTCATGAACTGGTCGTGGTTCAGGGACCGGTCGAACCCAACGGGGAGGCCGTCGGAGATGGTGCTGTAGTGGACGTCGAGGCCGGACTTCCGTACGCCGGAGAAGATATCGCCGTCCACGTCGGCGGAGTGGGCGTTGGAGGTCTGGTGGTGGATGGCGTGGGTGTTGACGAAAGAAATGGTGAAGCCACGGGAGGCCAGGTGGGTGGCCAGGTGGACGGAGGGGATGACGTGGCCCTGGAGAGGGTACGGAATGAAAATGGCGTGGGGCCTTTGGCTTTGCCGGTCGGATTCTGGGGCCATTTTTTTGGGTGTTGTGTTGTGGAGGCACAGATCAAGAACAAAATCACAACTACTTAA

Coding sequence (CDS)

ATGAAATTAATGTGGAAACTGACCTTGGCATGCAAAATGGCCGTTTTGGCGAAGAAGATTCAAGTGGTAATACAGCGTAAAAACCAAGGCCGGTTCAGTCCACAGAGAAATATAGAGCAGGTTAAACTTCTTCGCAACCTTCGACGGCCACACGAAGAACGTGTCCGCAATCAGACACGTCACCGGAGCCTCTCCTCGCGACGACGCCGTCTTCACGATTCTCTCCACCTCCTCTTCCACGTGGGCCGAAAACACGTGCAGCAGCGACCTCATGAACTGGTCGTGGTTCAGGGACCGGTCGAACCCAACGGGGAGGCCGTCGGAGATGGTGCTGTAGTGGACGTCGAGGCCGGACTTCCGTACGCCGGAGAAGATATCGCCGTCCACGTCGGCGGAGTGGGCGTTGGAGGTCTGGTGGTGGATGGCGTGGGTGTTGACGAAAGAAATGGTGAAGCCACGGGAGGCCAGGTGGGTGGCCAGGTGGACGGAGGGGATGACGTGGCCCTGGAGAGGGTACGGAATGAAAATGGCGTGGGGCCTTTGGCTTTGCCGGTCGGATTCTGGGGCCATTTTTTTGGGTGTTGTGTTGTGGAGGCACAGATCAAGAACAAAATCACAACTACTTAA

Protein sequence

MKLMWKLTLACKMAVLAKKIQVVIQRKNQGRFSPQRNIEQVKLLRNLRRPHEERVRNQTRHRSLSSRRRRLHDSLHLLFHVGRKHVQQRPHELVVVQGPVEPNGEAVGDGAVVDVEAGLPYAGEDIAVHVGGVGVGGLVVDGVGVDERNGEATGGQVGGQVDGGDDVALERVRNENGVGPLALPVGFWGHFFGCCVVEAQIKNKITTT

Homology

[Close]

BLAST of Moc02g03250 vs. NCBI nr
Match: EXC31775.1 (hypothetical protein L484_020599 [Morus notabilis])

HSP 1 Score: 118.2 bits (295), Expect = 8.2e-23
Identity = 76/134 (56.72%), Postives = 97/134 (72.39%), Query Frame = 0


Query: 22  VVIQRKNQGRFSPQRNIEQVKLLRNLRRPHEERVRNQTRHRSLSSRRRRLHDSLHLLFHV 81
           ++I+ KNQ RFSP RNI+Q KLL NL RP+E+R+RNQT +  L    RR +D L  LFHV
Sbjct: 1   MIIKCKNQSRFSPVRNIKQTKLLSNLGRPNEKRIRNQTTNWRL---LRRPNDVLDSLFHV 60

Query: 82  GRKHVQQRPHELVVVQGPVEPNGEAVGDGAVVDVEAGLPYAGEDIAVHVGGVGVGGLVVD 141
             +H+QQ  HELVVV+  VE +GEA+GDGAV  V+ G+   GE+I   V G+G+GG+VVD
Sbjct: 61  SGEHMQQSSHELVVVERSVELDGEAIGDGAVAYVKPGV---GEEIVAGV-GLGLGGVVVD 120

Query: 142 GVGVDERNGEATGG 156
           GVG DE +GEA GG
Sbjct: 121 GVGADEGDGEALGG 127

[Close]

BLAST of Moc02g03250 vs. NCBI nr
Match: PON60328.1 (LOW QUALITY PROTEIN: hypothetical protein PanWU01x14_153140 [Parasponia andersonii])

HSP 1 Score: 87.0 bits (214), Expect = 2.0e-13
Identity = 70/172 (40.70%), Postives = 96/172 (55.81%), Query Frame = 0


Query: 8   TLACKMAVLAKKIQVVIQRKNQGRFSPQRNIEQVKLLRNLRRPHEERVRNQTRHRSLSSR 67
           TL C M +  K++QV++Q +++   SP+R+I++V  L     P EE V +Q R+R +   
Sbjct: 30  TLRCIMTIYFKEVQVIVQSEDKSWLSPKRHIKKVVFLGYHGLPSEESVGHQARYRRIGR- 89

Query: 68  RRRLHDSLHLLFHVGRKHVQQRPHELVVVQGPVEPNGEAVGDGAVVDVEAGLPYAGEDIA 127
                D+     HV RK++Q     L+ VQ PVE   + V +  V DVE G+    EDI 
Sbjct: 90  ----FDTSDEFIHVSRKNMQVTLQVLLHVQVPVEAQRKTVTNRFVPDVEPGVAGRSEDIN 149

Query: 128 VHVGGVGVGG-LVVDGVGVDERNGEATGGQVGGQVDGGDDVALERVRNENGV 179
           V V G    G LVVD + VDE +GEA   Q+  QV GGDDVALER    +GV
Sbjct: 150 VVVLGADTAGDLVVDNLSVDEGDGEALRCQLDRQVYGGDDVALERDGENDGV 196

[Close]

BLAST of Moc02g03250 vs. NCBI nr
Match: POO01714.1 (hypothetical protein TorRG33x02_024910 [Trema orientale])

HSP 1 Score: 85.1 bits (209), Expect = 7.7e-13
Identity = 71/174 (40.80%), Postives = 97/174 (55.75%), Query Frame = 0


Query: 8   TLACKMAVLAKKIQVVIQRKNQGRFSPQRNIEQVKLLRNLRRPHEERVRNQTRHRSLSSR 67
           TL C M +  K++QV+++R+++   SP+R+I++   L   R P EE V +Q R+R +   
Sbjct: 28  TLRCIMTIYFKEVQVIVKREDKSWLSPKRHIKKAVFLGYHRLPSEESVGHQARYRRIG-- 87

Query: 68  RRRLHDSLHLLFHVGRKHVQQRPHELVVVQGPVEPNGEAVGDGAVVDVEAGLPYAGEDIA 127
             R   +     HV RK++Q     L  VQ PVE   + V +  V DVE G+    EDI 
Sbjct: 88  --RYDQTSDEFVHVSRKNMQVTLQVLFHVQVPVEAQRKTVTNRFVSDVEPGVAGRSEDIN 147

Query: 128 VHV--GGVGVGG-LVVDGVGVDERNGEATGGQVGGQVDGGDDVALERVRNENGV 179
           V V  G    GG LVVD + VDE +GEA G Q+  QV G DDVALER    +GV
Sbjct: 148 VVVVSGADAAGGDLVVDDLSVDEGDGEALGCQLDRQVYGRDDVALERDGENDGV 197

[Close]

BLAST of Moc02g03250 vs. NCBI nr
Match: RXI04638.1 (hypothetical protein DVH24_038912 [Malus domestica])

HSP 1 Score: 59.3 bits (142), Expect = 4.5e-05
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 42  KLLRNLRRPHEERVRNQTRHRSLSSRRRRLHDSLHLLFHVGRKHVQQRPHELVVVQGPVE 101
           ++L  ++RPHE+RV N T  R   S  RRLH   H L +VGRKH+QQR HELV+++ PVE
Sbjct: 809 QVLSKMKRPHEKRVSNYTSDRCGVS--RRLHSLSHHLLYVGRKHMQQRSHELVMIKRPVE 868

Query: 102 PNG 105
            NG
Sbjct: 869 LNG 869

[Close]

BLAST of Moc02g03250 vs. ExPASy TrEMBL
Match: W9SJH6 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020599 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 4.0e-23
Identity = 76/134 (56.72%), Postives = 97/134 (72.39%), Query Frame = 0


Query: 22  VVIQRKNQGRFSPQRNIEQVKLLRNLRRPHEERVRNQTRHRSLSSRRRRLHDSLHLLFHV 81
           ++I+ KNQ RFSP RNI+Q KLL NL RP+E+R+RNQT +  L    RR +D L  LFHV
Sbjct: 1   MIIKCKNQSRFSPVRNIKQTKLLSNLGRPNEKRIRNQTTNWRL---LRRPNDVLDSLFHV 60

Query: 82  GRKHVQQRPHELVVVQGPVEPNGEAVGDGAVVDVEAGLPYAGEDIAVHVGGVGVGGLVVD 141
             +H+QQ  HELVVV+  VE +GEA+GDGAV  V+ G+   GE+I   V G+G+GG+VVD
Sbjct: 61  SGEHMQQSSHELVVVERSVELDGEAIGDGAVAYVKPGV---GEEIVAGV-GLGLGGVVVD 120

Query: 142 GVGVDERNGEATGG 156
           GVG DE +GEA GG
Sbjct: 121 GVGADEGDGEALGG 127

[Close]

BLAST of Moc02g03250 vs. ExPASy TrEMBL
Match: A0A2P5CH28 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_153140 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 9.8e-14
Identity = 70/172 (40.70%), Postives = 96/172 (55.81%), Query Frame = 0


Query: 8   TLACKMAVLAKKIQVVIQRKNQGRFSPQRNIEQVKLLRNLRRPHEERVRNQTRHRSLSSR 67
           TL C M +  K++QV++Q +++   SP+R+I++V  L     P EE V +Q R+R +   
Sbjct: 30  TLRCIMTIYFKEVQVIVQSEDKSWLSPKRHIKKVVFLGYHGLPSEESVGHQARYRRIGR- 89

Query: 68  RRRLHDSLHLLFHVGRKHVQQRPHELVVVQGPVEPNGEAVGDGAVVDVEAGLPYAGEDIA 127
                D+     HV RK++Q     L+ VQ PVE   + V +  V DVE G+    EDI 
Sbjct: 90  ----FDTSDEFIHVSRKNMQVTLQVLLHVQVPVEAQRKTVTNRFVPDVEPGVAGRSEDIN 149

Query: 128 VHVGGVGVGG-LVVDGVGVDERNGEATGGQVGGQVDGGDDVALERVRNENGV 179
           V V G    G LVVD + VDE +GEA   Q+  QV GGDDVALER    +GV
Sbjct: 150 VVVLGADTAGDLVVDNLSVDEGDGEALRCQLDRQVYGGDDVALERDGENDGV 196

[Close]

BLAST of Moc02g03250 vs. ExPASy TrEMBL
Match: A0A2P5FV84 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_024910 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.7e-13
Identity = 71/174 (40.80%), Postives = 97/174 (55.75%), Query Frame = 0


Query: 8   TLACKMAVLAKKIQVVIQRKNQGRFSPQRNIEQVKLLRNLRRPHEERVRNQTRHRSLSSR 67
           TL C M +  K++QV+++R+++   SP+R+I++   L   R P EE V +Q R+R +   
Sbjct: 28  TLRCIMTIYFKEVQVIVKREDKSWLSPKRHIKKAVFLGYHRLPSEESVGHQARYRRIG-- 87

Query: 68  RRRLHDSLHLLFHVGRKHVQQRPHELVVVQGPVEPNGEAVGDGAVVDVEAGLPYAGEDIA 127
             R   +     HV RK++Q     L  VQ PVE   + V +  V DVE G+    EDI 
Sbjct: 88  --RYDQTSDEFVHVSRKNMQVTLQVLFHVQVPVEAQRKTVTNRFVSDVEPGVAGRSEDIN 147

Query: 128 VHV--GGVGVGG-LVVDGVGVDERNGEATGGQVGGQVDGGDDVALERVRNENGV 179
           V V  G    GG LVVD + VDE +GEA G Q+  QV G DDVALER    +GV
Sbjct: 148 VVVVSGADAAGGDLVVDDLSVDEGDGEALGCQLDRQVYGRDDVALERDGENDGV 197

[Close]

BLAST of Moc02g03250 vs. ExPASy TrEMBL
Match: A0A498KAX8 (ABC transporter domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_038912 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.2e-05
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 42  KLLRNLRRPHEERVRNQTRHRSLSSRRRRLHDSLHLLFHVGRKHVQQRPHELVVVQGPVE 101
           ++L  ++RPHE+RV N T  R   S  RRLH   H L +VGRKH+QQR HELV+++ PVE
Sbjct: 809 QVLSKMKRPHEKRVSNYTSDRCGVS--RRLHSLSHHLLYVGRKHMQQRSHELVMIKRPVE 868

Query: 102 PNG 105
            NG
Sbjct: 869 LNG 869

The following BLAST results are available for this feature:

BLAST of Moc02g03250 vs. NCBI nr


Match Name	E-value	Identity	Description
EXC31775.1	8.2e-23	56.72	hypothetical protein L484_020599 [Morus notabilis]	[more]
PON60328.1	2.0e-13	40.70	LOW QUALITY PROTEIN: hypothetical protein PanWU01x14_153140 [Parasponia anderson...	[more]
POO01714.1	7.7e-13	40.80	hypothetical protein TorRG33x02_024910 [Trema orientale]	[more]
RXI04638.1	4.5e-05	53.97	hypothetical protein DVH24_038912 [Malus domestica]	[more]

BLAST of Moc02g03250 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc02g03250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
W9SJH6	4.0e-23	56.72	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020599 PE=4 SV=1	[more]
A0A2P5CH28	9.8e-14	40.70	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_153140 PE...	[more]
A0A2P5FV84	3.7e-13	40.80	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_024910 PE=4 SV...	[more]
A0A498KAX8	2.2e-05	53.97	ABC transporter domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_03...	[more]

BLAST of Moc02g03250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc02g03250.1	Moc02g03250.1	mRNA