Moc02g01440 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc02g01440
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	heterogeneous nuclear ribonucleoprotein F
Location	chr2: 1093263 .. 1096919 (+)
RNA-Seq Expression	Moc02g01440
Synteny	Moc02g01440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTACCGAGGGTAACTTTCCCCTTCTCCGATCTCTATTCTCAAGTTTTTTTTGGGTTATTTCTATGCCTTTTCCCCCCTCAATTCTTACATTTTTCACGTCGATTTGAGTCTCTGTTTGTCTACATCTCTTTTTATTTATGAACTGATCGGGATTCTGAGCTGCTATTTGTTAATTGTTTCTACCGGCGGTTATCAGTTTCCTTTTATCATTCACTGAGAGAGTTTCGTTCTTTCTTTTATCGGATTATGATTGTTTAGAGGTACCTTTTGTTACTTAGAATATCACCGATTTTGGGAATGACCGTATATGAGTGGATGTTGTTCTTCGGGATTAGTTTCTTTTGTTTTTGGGTTCTTAACCCTTCGTGCATGCTCGAGAGGAGGCGTGTGCAGCTTGAATATGATCTATGGTTAAACTAGCGCGTAAAGTAAAATAGAAGTTTTAACTTTAAAATTTTGCAGGTCAAGTTTGGTGTTTTACTAAGTTTGAGTGATTGGGGATGGTTGGTTGGCATATTTGTACAATTTAAAAGACTGGATTGTCGAATTAGTTCAACCACCAAAGAAGGCTAACATGAAAATTCCACCATTGGTGTGAATAAAAAACGATGAATTGCTATAAATCCATAAGTGTATACCATCTGGAGGAGGCCGAGAAGATGATACTCTCCTTGACTTCCTGTACGTCCCTAAAGATATTGACAAAAAATTCAGTTGTTTCTGTCATGCCAAATCCGTCAAAAAGCTGCCATGAAATAGTTGAACCACAGTTTTTGCTTTACTCTCAGGTTTTTGATCCATGACTAGTTTAAATATAATGTCAATGATATTAGGGGGAAGGAAATGCACTACTGATTACAGAAAATTGGAAGTATTGGGAATGGTCTTTCAAAAGTTTGCTAAGAATGAACTGCGTTCATTGGATTTTTAAAATTGACGTGGAGATGGCCTTTGAAATGACTGGTTGGAATTTCTTGAAGAAAAGGGGCTTCTACATAAAATGAAGCAAGTTGGTATTCAGTTGCATTAGCACTACTACGTTTCTCAATTTTCTAAATTGAAAACCTCATAGTAGAATTAAAGCTTCAAGAGCGCAAACCTTTTCTGGTGTAGTAAAGTTCTTGGCCTATGCCCTACCTTGGTGTCCCCCATTGGGGTTGGGAATTGGTGGTAGATAGCAAGTGTAGGAATAGCAAATTCTCTGAGGGAAGCAAACTAACTCTTATTCAGCATGTCTTATCTAGAATTTTGACCTGCTACATGCATCTTTTCAAAATCTCTATTGCTATGGCCAAAATTCTGGAGAAGTACTTTAGTGATTTCTCCTGGCATGATGATTCCAAGTCAACAGGTGGCTCCTGTGTCGTTTGTAACATTCCCGAGCTTCATATTTTTAAATGTGATTTGGGTATTGACAATGTAATCAATCATAATCTGGCTCTCGTTTTTAAATGGTCATAGAGATTCCCAAATGAACAAGGTTCTCTCTGCCACTTGGTCACTTCTAGTAAATACAGTGCTCAAATGAATGGATGGTCTCCCGAAGCCCAGGGCACTTTATAAAGAGTAGAGAAACAAATGTTTGAATACTGTAGTGGATTGCAAAGCTGAGAATGGAAATATAAATTGATCTTGGGAGGAATGCTACCCCCTTGCCCTTCACTGACACCTCTCTTGCAGATTACTCCCATGCCTCTATACTACTGTGAAGAATGAAAATAGCACGATAACTGACTGTTAGGATTAAAGAAACAATGACCTGGAACCTGGTCTTTTGAAGATGTCTGAAGGATGAGGAAGTCTTACAATTTTTAGACCTTTTGTTGCAAATTAGCTCCTTTAGACCATACAGGAAGGGAGACAGGAGAATTTGGTATTTGGACGTATATGTCAATTTCTCCTGCAAGTCGCTTTGTCATCGTCTTGTTGGCTCTCATCCTGCCTCTCGTCCCACCACCAAAAAAAGCCATGGCAATTTGATTCTGGTGGAGAAAGATTCCCGAAAAGATAAAGGCTTCCACTGGACTCTTCTTTGGAGAAAATTAGACACCTAAGAAAAATTGCATGCAAGATTCCACTCCCTTTTTCCAATGAGTGCGTGCCTGTGATTTTCTTATTGGATAATGGAGAAATCTTTTTTAGCTTTTACCAACAATACCGAGCCCAATCATTTGCTCAGGCATATAGATCAAACTCCAATGTCCAATTGACCAGATGGCTTCCTGCCCTTGTCTGCTTCTCCTTGGAGGCTAGTAGTGCCTTCAATTCTGGTTGATACCAAAAGGTTGACAGCTGATATTCCTTCAGATTTAGTGGATTTGATTCTGTTTGGAAAAATATTTATGTAGGAGAGATGCCTTTATGAGTTGTTTTACAAGATTTCATCAAGCTTCCAACTTGCTGCACTACTTTCCTGTTCTTCATTGATGGTCTAAGGTGCTCTAAGGGAGGAATCTACTCTTTAGAAGGAACCTGACTGAGCTAGAAACCATGGAATGGCGAAAATTCCTGACATTCTTTCAAGTGGTTCATTTAAATCAGTCCCCTGCTAGAAAATACTTTTCAAGGTATCTTACAGGTGGATCTTGAAAGCAAGTTCTTGGCTGTGCTGTGTTATAGTGGGAAAATAGTGAAGTTTGCCCATTTCTTTTTGGGAAACTTGAAACTGCAGATTTATCTTTCAATAGTCAAAGAAATTTTACCCTAAATAATTAAATATTTGATATGCATAGGAGCCATCAACCATCTCTTTGCGCCTGCATACCAATGAATGGGAGAACCTGAAAATTTCCTAACATTGTTATACATTGATTTTTTAATCTTTTGGCATGGGGTATTCATACGGTTTCTAATTTTGTGAATTTCATGTTTTTGTTTTGACCACAGTTCATACGTTGATGGTGGCAATGGTCGTGAAATGGGTGCAAAGCGGCAACGGATAGTTGATCAGGGATCTTCTTATTACGGGACTTCTCCTGGTTCTGGTTTTATGTATAATACAAGTCCCTATGCATACGTTAGTCAGCCACCACCGTTTCCTGTTGTCAGACTTCGAGGTCTTCCTTTCGATTGCATGGAAACTGATGTTGCTGAGTTCTTTCATGGTCTGGACATAGTTGACATTGTTTTTGTGCACAAGAATGGTAAATTCACAGGGGAAGGTTTTTGTGTTTTGGGTTACCCTCTGCAGGTTGATTTTGCCCTTCAGAGAAATAGGCAAAACATGGGCAGGAGATATGTTGAGATTTTCAGGAGTAATCGGCAGGAATACTACAAGGCTTTAGCAAATGAAGTATTCGATGCCCGGGGTGGTTCACCAAGAAGAACTGCACCCAGCTGGTCGAAGCCAAACAACGAGGTGAAAGACTCTGCTGAACACACGGGTGTACTACGATTGAGGGGACTGCCATATTCGGCTGGCAAGGATGACATACTGGACTTCTTCAAAGGTTTTAACTTATCGGAGGACTTGATTCATTTAACACTGAATTCAGAGGGGAGGCCAAGTGGGGAGGCATTCGTCGAGTTCGCCAACGTGCAAGACTCGAAAGCAGCCATGGCCAAGGACAGAATGACGCTAGGTAGTCGATACATAGAGCTGTTCCCATCATCACAGGAAGAGCTCGACGAAGCAATCTCTAGAGGGCGGTGA

mRNA sequence

ATGTTCTACCGAGGTTCATACGTTGATGGTGGCAATGGTCGTGAAATGGGTGCAAAGCGGCAACGGATAGTTGATCAGGGATCTTCTTATTACGGGACTTCTCCTGGTTCTGGTTTTATGTATAATACAAGTCCCTATGCATACGTTAGTCAGCCACCACCGTTTCCTGTTGTCAGACTTCGAGGTCTTCCTTTCGATTGCATGGAAACTGATGTTGCTGAGTTCTTTCATGGTCTGGACATAGTTGACATTGTTTTTGTGCACAAGAATGGTAAATTCACAGGGGAAGGTTTTTGTGTTTTGGGTTACCCTCTGCAGGTTGATTTTGCCCTTCAGAGAAATAGGCAAAACATGGGCAGGAGATATGTTGAGATTTTCAGGAGTAATCGGCAGGAATACTACAAGGCTTTAGCAAATGAAGTATTCGATGCCCGGGGTGGTTCACCAAGAAGAACTGCACCCAGCTGGTCGAAGCCAAACAACGAGGTGAAAGACTCTGCTGAACACACGGGTGTACTACGATTGAGGGGACTGCCATATTCGGCTGGCAAGGATGACATACTGGACTTCTTCAAAGGTTTTAACTTATCGGAGGACTTGATTCATTTAACACTGAATTCAGAGGGGAGGCCAAGTGGGGAGGCATTCGTCGAGTTCGCCAACGTGCAAGACTCGAAAGCAGCCATGGCCAAGGACAGAATGACGCTAGGTAGTCGATACATAGAGCTGTTCCCATCATCACAGGAAGAGCTCGACGAAGCAATCTCTAGAGGGCGGTGA

Coding sequence (CDS)

ATGTTCTACCGAGGTTCATACGTTGATGGTGGCAATGGTCGTGAAATGGGTGCAAAGCGGCAACGGATAGTTGATCAGGGATCTTCTTATTACGGGACTTCTCCTGGTTCTGGTTTTATGTATAATACAAGTCCCTATGCATACGTTAGTCAGCCACCACCGTTTCCTGTTGTCAGACTTCGAGGTCTTCCTTTCGATTGCATGGAAACTGATGTTGCTGAGTTCTTTCATGGTCTGGACATAGTTGACATTGTTTTTGTGCACAAGAATGGTAAATTCACAGGGGAAGGTTTTTGTGTTTTGGGTTACCCTCTGCAGGTTGATTTTGCCCTTCAGAGAAATAGGCAAAACATGGGCAGGAGATATGTTGAGATTTTCAGGAGTAATCGGCAGGAATACTACAAGGCTTTAGCAAATGAAGTATTCGATGCCCGGGGTGGTTCACCAAGAAGAACTGCACCCAGCTGGTCGAAGCCAAACAACGAGGTGAAAGACTCTGCTGAACACACGGGTGTACTACGATTGAGGGGACTGCCATATTCGGCTGGCAAGGATGACATACTGGACTTCTTCAAAGGTTTTAACTTATCGGAGGACTTGATTCATTTAACACTGAATTCAGAGGGGAGGCCAAGTGGGGAGGCATTCGTCGAGTTCGCCAACGTGCAAGACTCGAAAGCAGCCATGGCCAAGGACAGAATGACGCTAGGTAGTCGATACATAGAGCTGTTCCCATCATCACAGGAAGAGCTCGACGAAGCAATCTCTAGAGGGCGGTGA

Protein sequence

MFYRGSYVDGGNGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVVRLRGLPFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRYIELFPSSQEELDEAISRGR

Homology

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BLAST of Moc02g01440 vs. NCBI nr
Match: XP_022148687.1 (heterogeneous nuclear ribonucleoprotein F [Momordica charantia])

HSP 1 Score: 532.3 bits (1370), Expect = 2.3e-147
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0


Query: 1   MFYRGSYVDGGNGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVVRL 60
           MFYRGSYVDGGNGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVVRL
Sbjct: 1   MFYRGSYVDGGNGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVVRL 60

Query: 61  RGLPFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 120
           RGLPFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR
Sbjct: 61  RGLPFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 120

Query: 121 RYVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPY 180
           RYVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPY
Sbjct: 121 RYVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPY 180

Query: 181 SAGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRY 240
           SAGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRY
Sbjct: 181 SAGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRY 240

Query: 241 IELFPSSQEELDEAISRGR 260
           IELFPSSQEELDEAISRGR
Sbjct: 241 IELFPSSQEELDEAISRGR 259

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BLAST of Moc02g01440 vs. NCBI nr
Match: XP_004142112.1 (heterogeneous nuclear ribonucleoprotein F [Cucumis sativus] >XP_008449713.1 PREDICTED: heterogeneous nuclear ribonucleoprotein F [Cucumis melo] >KGN54181.1 hypothetical protein Csa_018007 [Cucumis sativus])

HSP 1 Score: 496.5 bits (1277), Expect = 1.4e-136
Identity = 243/259 (93.82%), Postives = 251/259 (96.91%), Query Frame = 0


Query: 1   MFYRGSYVDGGNGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVVRL 60
           MFYRGSY DGG+GREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYV+QPPPFPVVRL
Sbjct: 3   MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRL 62

Query: 61  RGLPFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 120
           RGLPFDCMETDV EFFHGLDIVDI+FVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR
Sbjct: 63  RGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 122

Query: 121 RYVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPY 180
           RYVEIFRSNRQEYYKA+ANEVFDARGGSPRR+AP  SK N+EVKDSAEHTGVLRLRGLPY
Sbjct: 123 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPR-SKLNDEVKDSAEHTGVLRLRGLPY 182

Query: 181 SAGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRY 240
           SAGKDDILDFFKGFNLSED IHLTLNSEGRPSGEAFVEF+N QDSKAAM+KDRMTLGSRY
Sbjct: 183 SAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRY 242

Query: 241 IELFPSSQEELDEAISRGR 260
           IELFPSS EELDEAISRGR
Sbjct: 243 IELFPSSHEELDEAISRGR 260

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BLAST of Moc02g01440 vs. NCBI nr
Match: XP_038901811.1 (heterogeneous nuclear ribonucleoprotein F isoform X1 [Benincasa hispida])

HSP 1 Score: 492.7 bits (1267), Expect = 2.0e-135
Identity = 241/259 (93.05%), Postives = 249/259 (96.14%), Query Frame = 0


Query: 1   MFYRGSYVDGGNGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVVRL 60
           MFYRGSY DGG+GREMGAKRQRIVDQGSSYYGT PGSGFMYNTSPYAYV+QPPPFPVVRL
Sbjct: 3   MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYAYVNQPPPFPVVRL 62

Query: 61  RGLPFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 120
           RGLPFDCMETDV EFFHGLDIVDI+FVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR
Sbjct: 63  RGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 122

Query: 121 RYVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPY 180
           RYVEIFRSNRQEYYKA+ANEVFDARGGSPRR+AP  SK N+EVKD AEHTGVLRLRGLPY
Sbjct: 123 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPR-SKLNDEVKDCAEHTGVLRLRGLPY 182

Query: 181 SAGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRY 240
           SAGKDDILDFFKGFNLSED IHLTLNSEGRPSGEAFVEF+N QDSKAAM+KDRMTLGSRY
Sbjct: 183 SAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRY 242

Query: 241 IELFPSSQEELDEAISRGR 260
           IELFPSS EELDEAISRGR
Sbjct: 243 IELFPSSHEELDEAISRGR 260

[Close]

BLAST of Moc02g01440 vs. NCBI nr
Match: XP_022958677.1 (heterogeneous nuclear ribonucleoprotein F-like [Cucurbita moschata] >KAG6605916.1 Heterogeneous nuclear ribonucleoprotein F, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 492.3 bits (1266), Expect = 2.6e-135
Identity = 240/259 (92.66%), Postives = 250/259 (96.53%), Query Frame = 0


Query: 1   MFYRGSYVDGGNGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVVRL 60
           MFYRGS+ DGG+GREMGAKRQRIVDQGSSYYGTSPG+GFMYN SPYAYV QPPPFPVVRL
Sbjct: 1   MFYRGSFADGGDGREMGAKRQRIVDQGSSYYGTSPGAGFMYNASPYAYVGQPPPFPVVRL 60

Query: 61  RGLPFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 120
           RGLPFDCMETDVAEFFHGLDIVDI+FVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR
Sbjct: 61  RGLPFDCMETDVAEFFHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 120

Query: 121 RYVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPY 180
           RYVEIFRSNRQEYYKA+ANEVFDARGGSPRRTAP  SK N+EVKD AEHTG+LRLRGLPY
Sbjct: 121 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPR-SKLNDEVKDFAEHTGILRLRGLPY 180

Query: 181 SAGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRY 240
           SAGKDDILDFFKGF LSED+IHLTLNSEGRPSGEAFVEFAN QDSKAAM+KDRMTLGSRY
Sbjct: 181 SAGKDDILDFFKGFILSEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRY 240

Query: 241 IELFPSSQEELDEAISRGR 260
           IELFPSSQEELDEAI+RGR
Sbjct: 241 IELFPSSQEELDEAIARGR 258

[Close]

BLAST of Moc02g01440 vs. NCBI nr
Match: XP_022995127.1 (heterogeneous nuclear ribonucleoprotein F-like [Cucurbita maxima])

HSP 1 Score: 488.8 bits (1257), Expect = 2.9e-134
Identity = 239/259 (92.28%), Postives = 249/259 (96.14%), Query Frame = 0


Query: 1   MFYRGSYVDGGNGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVVRL 60
           MFYRGSY DGG+GREMGAKRQRIVDQGSSYYGTSPG+GFMYNTSPYAYV QPPPFPVVRL
Sbjct: 1   MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGAGFMYNTSPYAYVGQPPPFPVVRL 60

Query: 61  RGLPFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 120
           RGLPFDCMETDVAEFFHGLDIVDI+FVHK+ KFTGEGFCVLGYPLQVDFALQRNRQN+GR
Sbjct: 61  RGLPFDCMETDVAEFFHGLDIVDILFVHKSDKFTGEGFCVLGYPLQVDFALQRNRQNLGR 120

Query: 121 RYVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPY 180
           RYVEIFRSNRQEYYKA+ANEVFDARGGSPRRTAP  SK N+EVKD AEHTG+LRLRGLPY
Sbjct: 121 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPR-SKLNDEVKDFAEHTGILRLRGLPY 180

Query: 181 SAGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRY 240
           SAGKDDILDFFKGF LSED+IHLTLNSEGRPSGEAFVEFAN QDSKAAM+KDRMTLGSRY
Sbjct: 181 SAGKDDILDFFKGFILSEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRY 240

Query: 241 IELFPSSQEELDEAISRGR 260
           IELFPSSQEELDEAI RGR
Sbjct: 241 IELFPSSQEELDEAIGRGR 258

[Close]

BLAST of Moc02g01440 vs. ExPASy Swiss-Prot
Match: P52597 (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1 SV=3)

HSP 1 Score: 126.3 bits (316), Expect = 4.9e-28
Identity = 76/200 (38.00%), Postives = 117/200 (58.50%), Query Frame = 0


Query: 57  VVRLRGLPFDCMETDVAEFFHGLDIVD----IVFVH-KNGKFTGEGFCVLGYPLQVDFAL 116
           VV+LRGLP+ C   DV  F     I D    + F++ + G+ +GE F  LG    V  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 117 QRNRQNMGRRYVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTG 176
           +++R++MG RY+E+F+S+R E    L +                 S PN+   DSA + G
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVLKH-----------------SGPNS--ADSA-NDG 131

Query: 177 VLRLRGLPYSAGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAK 236
            +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+FA+ + ++ A+ K
Sbjct: 132 FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK 191

Query: 237 DRMTLGSRYIELFPSSQEEL 252
            +  +G RYIE+F SSQEE+
Sbjct: 192 HKERIGHRYIEVFKSSQEEV 191

[Close]

BLAST of Moc02g01440 vs. ExPASy Swiss-Prot
Match: Q60HC3 (Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis OX=9541 GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 126.3 bits (316), Expect = 4.9e-28
Identity = 76/200 (38.00%), Postives = 117/200 (58.50%), Query Frame = 0


Query: 57  VVRLRGLPFDCMETDVAEFFHGLDIVD----IVFVH-KNGKFTGEGFCVLGYPLQVDFAL 116
           VV+LRGLP+ C   DV  F     I D    + F++ + G+ +GE F  LG    V  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 117 QRNRQNMGRRYVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTG 176
           +++R++MG RY+E+F+S+R E    L +                 S PN+   DSA + G
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVLKH-----------------SGPNS--ADSA-NDG 131

Query: 177 VLRLRGLPYSAGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAK 236
            +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+FA+ + ++ A+ K
Sbjct: 132 FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK 191

Query: 237 DRMTLGSRYIELFPSSQEEL 252
            +  +G RYIE+F SSQEE+
Sbjct: 192 HKERIGHRYIEVFKSSQEEV 191

[Close]

BLAST of Moc02g01440 vs. ExPASy Swiss-Prot
Match: Q9Z2X1 (Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 123.2 bits (308), Expect = 4.2e-27
Identity = 76/200 (38.00%), Postives = 115/200 (57.50%), Query Frame = 0


Query: 57  VVRLRGLPFDCMETDVAEFFHGLDIVD-IVFVH----KNGKFTGEGFCVLGYPLQVDFAL 116
           VV+LRGLP+ C   DV  F     I D +  VH    + G+ +GE F  L     V  AL
Sbjct: 12  VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 117 QRNRQNMGRRYVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTG 176
           +++R++MG RY+E+F+S+R E    L +                 S PN+   DSA + G
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVLKH-----------------SGPNS--ADSA-NDG 131

Query: 177 VLRLRGLPYSAGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAK 236
            +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+FA+ + ++ A+ K
Sbjct: 132 FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK 191

Query: 237 DRMTLGSRYIELFPSSQEEL 252
            +  +G RYIE+F SSQEE+
Sbjct: 192 HKERIGHRYIEVFKSSQEEV 191

[Close]

BLAST of Moc02g01440 vs. ExPASy Swiss-Prot
Match: Q794E4 (Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus OX=10116 GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 123.2 bits (308), Expect = 4.2e-27
Identity = 76/200 (38.00%), Postives = 115/200 (57.50%), Query Frame = 0


Query: 57  VVRLRGLPFDCMETDVAEFFHGLDIVD-IVFVH----KNGKFTGEGFCVLGYPLQVDFAL 116
           VV+LRGLP+ C   DV  F     I D +  VH    + G+ +GE F  L     V  AL
Sbjct: 12  VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 117 QRNRQNMGRRYVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTG 176
           +++R++MG RY+E+F+S+R E    L +                 S PN+   DSA + G
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVLKH-----------------SGPNS--ADSA-NDG 131

Query: 177 VLRLRGLPYSAGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAK 236
            +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+FA+ + ++ A+ K
Sbjct: 132 FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK 191

Query: 237 DRMTLGSRYIELFPSSQEEL 252
            +  +G RYIE+F SSQEE+
Sbjct: 192 HKERIGHRYIEVFKSSQEEV 191

[Close]

BLAST of Moc02g01440 vs. ExPASy Swiss-Prot
Match: Q5E9J1 (Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 122.9 bits (307), Expect = 5.5e-27
Identity = 75/200 (37.50%), Postives = 115/200 (57.50%), Query Frame = 0


Query: 57  VVRLRGLPFDCMETDVAEFFHGLDIVD-IVFVH----KNGKFTGEGFCVLGYPLQVDFAL 116
           VV+LRGLP+ C   DV  F     I D +  VH    + G+ +GE F  L     V  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 117 QRNRQNMGRRYVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTG 176
           +++R++MG RY+E+F+S+R E    L +                 S PN+   D+A + G
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVLKH-----------------SGPNS--ADTA-NDG 131

Query: 177 VLRLRGLPYSAGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAK 236
            +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+FA+ + ++ A+ K
Sbjct: 132 FVRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK 191

Query: 237 DRMTLGSRYIELFPSSQEEL 252
            +  +G RYIE+F SSQEE+
Sbjct: 192 HKERIGHRYIEVFKSSQEEV 191

[Close]

BLAST of Moc02g01440 vs. ExPASy TrEMBL
Match: A0A6J1D5R6 (heterogeneous nuclear ribonucleoprotein F OS=Momordica charantia OX=3673 GN=LOC111017289 PE=4 SV=1)

HSP 1 Score: 532.3 bits (1370), Expect = 1.1e-147
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0


Query: 1   MFYRGSYVDGGNGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVVRL 60
           MFYRGSYVDGGNGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVVRL
Sbjct: 1   MFYRGSYVDGGNGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVVRL 60

Query: 61  RGLPFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 120
           RGLPFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR
Sbjct: 61  RGLPFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 120

Query: 121 RYVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPY 180
           RYVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPY
Sbjct: 121 RYVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPY 180

Query: 181 SAGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRY 240
           SAGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRY
Sbjct: 181 SAGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRY 240

Query: 241 IELFPSSQEELDEAISRGR 260
           IELFPSSQEELDEAISRGR
Sbjct: 241 IELFPSSQEELDEAISRGR 259

[Close]

BLAST of Moc02g01440 vs. ExPASy TrEMBL
Match: A0A0A0L205 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G291930 PE=4 SV=1)

HSP 1 Score: 496.5 bits (1277), Expect = 6.7e-137
Identity = 243/259 (93.82%), Postives = 251/259 (96.91%), Query Frame = 0


Query: 1   MFYRGSYVDGGNGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVVRL 60
           MFYRGSY DGG+GREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYV+QPPPFPVVRL
Sbjct: 3   MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRL 62

Query: 61  RGLPFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 120
           RGLPFDCMETDV EFFHGLDIVDI+FVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR
Sbjct: 63  RGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 122

Query: 121 RYVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPY 180
           RYVEIFRSNRQEYYKA+ANEVFDARGGSPRR+AP  SK N+EVKDSAEHTGVLRLRGLPY
Sbjct: 123 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPR-SKLNDEVKDSAEHTGVLRLRGLPY 182

Query: 181 SAGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRY 240
           SAGKDDILDFFKGFNLSED IHLTLNSEGRPSGEAFVEF+N QDSKAAM+KDRMTLGSRY
Sbjct: 183 SAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRY 242

Query: 241 IELFPSSQEELDEAISRGR 260
           IELFPSS EELDEAISRGR
Sbjct: 243 IELFPSSHEELDEAISRGR 260

[Close]

BLAST of Moc02g01440 vs. ExPASy TrEMBL
Match: A0A1S3BMM3 (heterogeneous nuclear ribonucleoprotein F OS=Cucumis melo OX=3656 GN=LOC103491509 PE=4 SV=1)

HSP 1 Score: 496.5 bits (1277), Expect = 6.7e-137
Identity = 243/259 (93.82%), Postives = 251/259 (96.91%), Query Frame = 0


Query: 1   MFYRGSYVDGGNGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVVRL 60
           MFYRGSY DGG+GREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYV+QPPPFPVVRL
Sbjct: 3   MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRL 62

Query: 61  RGLPFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 120
           RGLPFDCMETDV EFFHGLDIVDI+FVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR
Sbjct: 63  RGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 122

Query: 121 RYVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPY 180
           RYVEIFRSNRQEYYKA+ANEVFDARGGSPRR+AP  SK N+EVKDSAEHTGVLRLRGLPY
Sbjct: 123 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPR-SKLNDEVKDSAEHTGVLRLRGLPY 182

Query: 181 SAGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRY 240
           SAGKDDILDFFKGFNLSED IHLTLNSEGRPSGEAFVEF+N QDSKAAM+KDRMTLGSRY
Sbjct: 183 SAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRY 242

Query: 241 IELFPSSQEELDEAISRGR 260
           IELFPSS EELDEAISRGR
Sbjct: 243 IELFPSSHEELDEAISRGR 260

[Close]

BLAST of Moc02g01440 vs. ExPASy TrEMBL
Match: A0A6J1H2H4 (heterogeneous nuclear ribonucleoprotein F-like OS=Cucurbita moschata OX=3662 GN=LOC111459832 PE=4 SV=1)

HSP 1 Score: 492.3 bits (1266), Expect = 1.3e-135
Identity = 240/259 (92.66%), Postives = 250/259 (96.53%), Query Frame = 0


Query: 1   MFYRGSYVDGGNGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVVRL 60
           MFYRGS+ DGG+GREMGAKRQRIVDQGSSYYGTSPG+GFMYN SPYAYV QPPPFPVVRL
Sbjct: 1   MFYRGSFADGGDGREMGAKRQRIVDQGSSYYGTSPGAGFMYNASPYAYVGQPPPFPVVRL 60

Query: 61  RGLPFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 120
           RGLPFDCMETDVAEFFHGLDIVDI+FVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR
Sbjct: 61  RGLPFDCMETDVAEFFHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 120

Query: 121 RYVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPY 180
           RYVEIFRSNRQEYYKA+ANEVFDARGGSPRRTAP  SK N+EVKD AEHTG+LRLRGLPY
Sbjct: 121 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPR-SKLNDEVKDFAEHTGILRLRGLPY 180

Query: 181 SAGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRY 240
           SAGKDDILDFFKGF LSED+IHLTLNSEGRPSGEAFVEFAN QDSKAAM+KDRMTLGSRY
Sbjct: 181 SAGKDDILDFFKGFILSEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRY 240

Query: 241 IELFPSSQEELDEAISRGR 260
           IELFPSSQEELDEAI+RGR
Sbjct: 241 IELFPSSQEELDEAIARGR 258

[Close]

BLAST of Moc02g01440 vs. ExPASy TrEMBL
Match: A0A6J1JXX1 (heterogeneous nuclear ribonucleoprotein F-like OS=Cucurbita maxima OX=3661 GN=LOC111490762 PE=4 SV=1)

HSP 1 Score: 488.8 bits (1257), Expect = 1.4e-134
Identity = 239/259 (92.28%), Postives = 249/259 (96.14%), Query Frame = 0


Query: 1   MFYRGSYVDGGNGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVVRL 60
           MFYRGSY DGG+GREMGAKRQRIVDQGSSYYGTSPG+GFMYNTSPYAYV QPPPFPVVRL
Sbjct: 1   MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGAGFMYNTSPYAYVGQPPPFPVVRL 60

Query: 61  RGLPFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 120
           RGLPFDCMETDVAEFFHGLDIVDI+FVHK+ KFTGEGFCVLGYPLQVDFALQRNRQN+GR
Sbjct: 61  RGLPFDCMETDVAEFFHGLDIVDILFVHKSDKFTGEGFCVLGYPLQVDFALQRNRQNLGR 120

Query: 121 RYVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPY 180
           RYVEIFRSNRQEYYKA+ANEVFDARGGSPRRTAP  SK N+EVKD AEHTG+LRLRGLPY
Sbjct: 121 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPR-SKLNDEVKDFAEHTGILRLRGLPY 180

Query: 181 SAGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRY 240
           SAGKDDILDFFKGF LSED+IHLTLNSEGRPSGEAFVEFAN QDSKAAM+KDRMTLGSRY
Sbjct: 181 SAGKDDILDFFKGFILSEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRY 240

Query: 241 IELFPSSQEELDEAISRGR 260
           IELFPSSQEELDEAI RGR
Sbjct: 241 IELFPSSQEELDEAIGRGR 258

[Close]

BLAST of Moc02g01440 vs. TAIR 10
Match: AT3G20890.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 362.8 bits (930), Expect = 2.2e-100
Identity = 184/295 (62.37%), Postives = 217/295 (73.56%), Query Frame = 0


Query: 1   MFYRGSYVDGGNGREMGAKRQRIVDQG--SSYYGTSPGSGFMYNTSPYAYVS--QPPPFP 60
           MFYRG Y DG +GREMG KRQR++DQG    +YG  P SGFMYN  PY +V+   PPPFP
Sbjct: 1   MFYRG-YGDGPDGREMGPKRQRMIDQGPPGPFYGPHPSSGFMYN--PYGFVAPPPPPPFP 60

Query: 61  VVRLRGLPFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQ 120
            VRLRGLPFDC E DV EFFHGLD+VD++FVH+N K TGE FCVLGYPLQVDFALQ+NRQ
Sbjct: 61  AVRLRGLPFDCAELDVVEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNRQ 120

Query: 121 NMGRRYVEIFRSNRQEYYKALANEVFDAR------------------------------- 180
           NMGRRYVE+FRS +QEYYKA+ANEV ++R                               
Sbjct: 121 NMGRRYVEVFRSTKQEYYKAIANEVAESRVHGMASGGGGGLGGGNGSGGGGGGGGGGGRI 180

Query: 181 -GGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKGFNLSEDLIHLT 240
            GGS  R     ++ +++ K+  EHTG+LRLRGLP+SAGK+DILDFFK F LSED +H+T
Sbjct: 181 SGGSSPRRHVQRARSSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVT 240

Query: 241 LNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRYIELFPSSQEELDEAISRGR 260
           +N EGRP+GEAFVEF N +DS+AAM KDR TLGSRYIELFPSS EEL+EA+SRGR
Sbjct: 241 VNGEGRPTGEAFVEFRNAEDSRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 292

[Close]

BLAST of Moc02g01440 vs. TAIR 10
Match: AT5G66010.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 228.0 bits (580), Expect = 8.6e-60
Identity = 122/256 (47.66%), Postives = 173/256 (67.58%), Query Frame = 0


Query: 10  GGNGREMGAKRQRIVDQGSSY--YGTSPGSGFMYNTSPYAYVSQPPPFPVVRLRGLPFDC 69
           G  G E+G+KRQR++ Q + Y   GT P S       P+ Y      FPVVRLRGLPF+C
Sbjct: 10  GSGGYEVGSKRQRMM-QSNPYLAVGTGPTS-----FPPFGYAG---GFPVVRLRGLPFNC 69

Query: 70  METDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFR 129
            + D+ EFF GL+IVD++ V KNGKF+GE F V   P+QV+ ALQR+R NMGRRYVE+FR
Sbjct: 70  ADIDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHNMGRRYVEVFR 129

Query: 130 SNRQEYYKALANE----VFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPYSAG 189
            ++Q+YY A+A E     ++ R  SP  T PS +K  +E K+  E+T VL++RGLPYS  
Sbjct: 130 CSKQDYYNAVAAEEGAYEYEVR-ASPPPTGPSRAKRFSE-KEKLEYTEVLKMRGLPYSVN 189

Query: 190 KDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRYIEL 249
           K  I++FF G+ + +  + +    +G+ +GEAFVEF   ++++ AMAKD+M++GSRY+EL
Sbjct: 190 KPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDKMSIGSRYVEL 249

Query: 250 FPSSQEELDEAISRGR 260
           FP+++EE   A +R R
Sbjct: 250 FPTTREEARRAEARSR 254

[Close]

BLAST of Moc02g01440 vs. TAIR 10
Match: AT5G66010.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 147.9 bits (372), Expect = 1.1e-35
Identity = 74/159 (46.54%), Postives = 112/159 (70.44%), Query Frame = 0


Query: 105 LQVDFALQRNRQNMGRRYVEIFRSNRQEYYKALANE----VFDARGGSPRRTAPSWSKPN 164
           +QV+ ALQR+R NMGRRYVE+FR ++Q+YY A+A E     ++ R  SP  T PS +K  
Sbjct: 1   MQVEIALQRDRHNMGRRYVEVFRCSKQDYYNAVAAEEGAYEYEVR-ASPPPTGPSRAKRF 60

Query: 165 NEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFA 224
           +E K+  E+T VL++RGLPYS  K  I++FF G+ + +  + +    +G+ +GEAFVEF 
Sbjct: 61  SE-KEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFE 120

Query: 225 NVQDSKAAMAKDRMTLGSRYIELFPSSQEELDEAISRGR 260
             ++++ AMAKD+M++GSRY+ELFP+++EE   A +R R
Sbjct: 121 TGEEARRAMAKDKMSIGSRYVELFPTTREEARRAEARSR 157

[Close]

BLAST of Moc02g01440 vs. TAIR 10
Match: AT4G19610.1 (nucleotide binding;nucleic acid binding;RNA binding )

HSP 1 Score: 42.0 bits (97), Expect = 8.7e-04
Identity = 25/99 (25.25%), Postives = 51/99 (51.52%), Query Frame = 0


Query: 157 SKPNNEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKGFNLSEDLIHLTLNSEGRPS-GEA 216
           ++ +  V D    TG L +R LPY+A ++++++ F  F    + +HL L+ E + S G A
Sbjct: 280 AQESKAVSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISE-VHLVLDKETKRSRGIA 339

Query: 217 FVEFANVQDSKAAMAK-DRMTLGSRYIELFPSSQEELDE 254
           ++ +   + +  AM + D  +   R + + P+   E  +
Sbjct: 340 YILYLIPECAARAMEELDNSSFQGRLLHILPAKHRETSD 377

The following BLAST results are available for this feature:

BLAST of Moc02g01440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148687.1	2.3e-147	100.00	heterogeneous nuclear ribonucleoprotein F [Momordica charantia]	[more]
XP_004142112.1	1.4e-136	93.82	heterogeneous nuclear ribonucleoprotein F [Cucumis sativus] >XP_008449713.1 PRED...	[more]
XP_038901811.1	2.0e-135	93.05	heterogeneous nuclear ribonucleoprotein F isoform X1 [Benincasa hispida]	[more]
XP_022958677.1	2.6e-135	92.66	heterogeneous nuclear ribonucleoprotein F-like [Cucurbita moschata] >KAG6605916....	[more]
XP_022995127.1	2.9e-134	92.28	heterogeneous nuclear ribonucleoprotein F-like [Cucurbita maxima]	[more]

BLAST of Moc02g01440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P52597	4.9e-28	38.00	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1...	[more]
Q60HC3	4.9e-28	38.00	Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis OX=9541 GN=HNRN...	[more]
Q9Z2X1	4.2e-27	38.00	Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Hnrnpf PE=...	[more]
Q794E4	4.2e-27	38.00	Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus OX=10116 GN=Hnrnp...	[more]
Q5E9J1	5.5e-27	37.50	Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=HNRNPF PE=2 S...	[more]

BLAST of Moc02g01440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D5R6	1.1e-147	100.00	heterogeneous nuclear ribonucleoprotein F OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A0A0L205	6.7e-137	93.82	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G291930 PE=4 SV...	[more]
A0A1S3BMM3	6.7e-137	93.82	heterogeneous nuclear ribonucleoprotein F OS=Cucumis melo OX=3656 GN=LOC10349150...	[more]
A0A6J1H2H4	1.3e-135	92.66	heterogeneous nuclear ribonucleoprotein F-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1JXX1	1.4e-134	92.28	heterogeneous nuclear ribonucleoprotein F-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of Moc02g01440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20890.1	2.2e-100	62.37	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G66010.1	8.6e-60	47.66	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G66010.2	1.1e-35	46.54	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G19610.1	8.7e-04	25.25	nucleotide binding;nucleic acid binding;RNA binding	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 57..126 e-value: 0.077 score: 16.5 coord: 172..244 e-value: 1.7E-8 score: 44.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 174..241 e-value: 1.3E-9 score: 37.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 171..248 score: 9.79736
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 43..143 e-value: 2.4E-20 score: 74.4 coord: 155..258 e-value: 3.5E-29 score: 102.9
None	No IPR available	PANTHER	PTHR13976	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	coord: 1..259
None	No IPR available	PANTHER	PTHR13976:SF76	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 1..259
None	No IPR available	CDD	cd12254	RRM_hnRNPH_ESRPs_RBM12_like	coord: 172..244 e-value: 1.92175E-29 score: 104.176
None	No IPR available	CDD	cd12254	RRM_hnRNPH_ESRPs_RBM12_like	coord: 57..126 e-value: 2.02331E-21 score: 82.9903
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 159..255
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 47..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc02g01440.1	Moc02g01440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding