Moc02g00160 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc02g00160
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Mediator of RNA polymerase II transcription subunit 21
Location	chr2: 153889 .. 155726 (+)
RNA-Seq Expression	Moc02g00160
Synteny	Moc02g00160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACATAATTTCCCAACTACAGGAACAAGTTAACACAATTGCAGCTTTAGCTTTCAACACATTTGGGACATTACAAAGAGACGCTCCTCCAGTTCGTTTATCCTCAAATTATCCTGAACCACCGTCTCAGGAACCTACAGAGGACAGTGCAAACATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTCAAAGCTGCTAAGCAGGTGTAAATTATTATTCGGTGGGATTGAATTGTTTGATGTTGCTCATGCACAATCTGTAATCTTTTTCCCTGTTGATACTTGATATTCATGGGTTCCTGTTTGTATCTTTGGGTAGAAAATATGAGATTGTGATGCATGTGCCTCTTGTTAGTTGCTTCTTGATGGGTCGAAATATCAAGAAAAGTATATGCCTCTCCCTCTTGGGGAAAATTAATACTGCCATTTTTTTAAATGTCAGTACCATAGATTAACTTGATATGCATTTTATCTACCAATAAGTAACCAACAATCAACTACCTGCTTGAAGCACCCTTGTGTTGCGGTTGGAAGCGGCAAAAATCACTCATCCTTGAATGCTCGTTTGGTGGATCTGGTTAATGCCAAGTCTCAACCTGTTTTTTCTGAGGATGATACAGGATTGTCATTACCTGCTTTTCAGCTCTCTTAAATTTTACTGCATTCTTGATGGGGTAGTAACATATCAAGCAACAGATTTGCTGCTACTTCTTTGAGATGCGTACACATTATAATGCTATGATATACGATATATACGATATATACATCAAAGGAAGCAAATTTGGTATTCGAAACTCCGATTTACTTTTTCCTTCTCCAACTAAAAACAATTTAGTTTTTCCTTCCAACTTCAGATACTACTTGGGCAGCTGTGGGTTCTTGAATCGGCAATAAGCCAAAATATTATAAAATTTTTAAAAATTATTCTCTGCTTTTAACTGCCTGATATGTTTAGCCTGCTTTTAAGAACTATTGTTTGGGTTGATGTATGGGAATCTGCAATTCAACCCATTATTCGACTGAAATCTGAATCATTTTTTATTTAGAAAATTTGCTGAGATAATTTTCATTTTAATAAGTTTCTAGCGATGGGGTTGAAAGTACAATGAATTGAGGTATAAGAGAATGGACCATGCTTCATTTAAATGCAATCCAATTGAATATATGTTCCCTTTTTATTATTCTTATTGTTGTGTGTGTATATACATATATATATAATTTTTTTTTTGGCACAGTTTGATGTATTGGTCGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAACAGTTGAAAAGGATTGCAGAACTACAGGTATAAATCTTCTTCCAATACTCTGATGTTGATATAAGACCAGAGTTCCTGTAATATTTAGTTCTCAGTGAGTTTGAAACTTGTTATCCAGGCTGAGAACGATGCTGTAGGCCAAGAACTTCAAAAGCAGTTGGAAGCTGCAGGTGTATCTCGTCTTCTTCTCGCCCTTTATATATTTACAACATGCCTAGTTGCAAATTTTGGGTCCACCATGACCTCAAAAGCATACGAAAAAAACTATTTCCTTTTGGAGATTGTTACTGTCTATGGTTTCATTTTGGTCCGAACTCACATAAGTTGATTAGATCATTGTCTGGTTTGCAACTTACAATGATTCAATTAATTTAAACTCTAAATTGCTCACCTTCTCTTCTGTTGAATATACTGATATTTTGGCATGGCTATACACCATTTACAATCTCAATGGAATCGTTTGTTGCAGAGAAGGAATTAAAACAGGTTCAGGAGCTTTTCAGCCAAGTGGCTGATAATTGCTTAAACTTGAAGAAAGCAGATTGA

mRNA sequence

ATGGACATAATTTCCCAACTACAGGAACAAGTTAACACAATTGCAGCTTTAGCTTTCAACACATTTGGGACATTACAAAGAGACGCTCCTCCAGTTCGTTTATCCTCAAATTATCCTGAACCACCGTCTCAGGAACCTACAGAGGACAGTGCAAACATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTCAAAGCTGCTAAGCAGTTTGATGTATTGGTCGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAACAGTTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGCTGTAGGCCAAGAACTTCAAAAGCAGTTGGAAGCTGCAGAGAAGGAATTAAAACAGGTTCAGGAGCTTTTCAGCCAAGTGGCTGATAATTGCTTAAACTTGAAGAAAGCAGATTGA

Coding sequence (CDS)

ATGGACATAATTTCCCAACTACAGGAACAAGTTAACACAATTGCAGCTTTAGCTTTCAACACATTTGGGACATTACAAAGAGACGCTCCTCCAGTTCGTTTATCCTCAAATTATCCTGAACCACCGTCTCAGGAACCTACAGAGGACAGTGCAAACATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTCAAAGCTGCTAAGCAGTTTGATGTATTGGTCGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAACAGTTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGCTGTAGGCCAAGAACTTCAAAAGCAGTTGGAAGCTGCAGAGAAGGAATTAAAACAGGTTCAGGAGCTTTTCAGCCAAGTGGCTGATAATTGCTTAAACTTGAAGAAAGCAGATTGA

Protein sequence

MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSSNYPEPPSQEPTEDSANIAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD

Homology

[Close]

BLAST of Moc02g00160 vs. NCBI nr
Match: XP_022153730.1 (mediator of RNA polymerase II transcription subunit 21 [Momordica charantia])

HSP 1 Score: 254.6 bits (649), Expect = 4.9e-64
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSSNYPEPPSQEPTEDSANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSSNYPEPPSQEPTEDSANIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSSNYPEPPSQEPTEDSANIAEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120
           SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of Moc02g00160 vs. NCBI nr
Match: XP_022958635.1 (mediator of RNA polymerase II transcription subunit 21 [Cucurbita moschata] >XP_022958636.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita moschata] >XP_022996209.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita maxima] >XP_022996211.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita maxima] >KAG7035787.1 Mediator of RNA polymerase II transcription subunit 21 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 247.3 bits (630), Expect = 7.8e-62
Identity = 134/138 (97.10%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSSNYPEPPSQEPTEDSANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS NYPEPP  EPTEDSAN AEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120
           SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of Moc02g00160 vs. NCBI nr
Match: KAG6605829.1 (Mediator of RNA polymerase II transcription subunit 21, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 246.5 bits (628), Expect = 1.3e-61
Identity = 133/138 (96.38%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSSNYPEPPSQEPTEDSANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS NYPEPP  EPTEDSAN AEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120
           SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNC+NLKKAD
Sbjct: 121 QELFSQVADNCMNLKKAD 138

[Close]

BLAST of Moc02g00160 vs. NCBI nr
Match: XP_038902781.1 (mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida])

HSP 1 Score: 245.4 bits (625), Expect = 3.0e-61
Identity = 133/138 (96.38%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSSNYPEPPSQEPTEDSANIAEQPKLM 60
           MDIISQLQEQVN+IAALAFNTFGTLQRDAPPVRLS NYPEPPSQEPTEDSANIAEQPKLM
Sbjct: 1   MDIISQLQEQVNSIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSANIAEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120
           SAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQL+AAEKEL QV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLQAAEKELIQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of Moc02g00160 vs. NCBI nr
Match: XP_023532119.1 (mediator of RNA polymerase II transcription subunit 21 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 244.6 bits (623), Expect = 5.1e-61
Identity = 132/138 (95.65%), Postives = 133/138 (96.38%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSSNYPEPPSQEPTEDSANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS NYPEPP  EPT+DSAN  EQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTDDSANFVEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120
           SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of Moc02g00160 vs. ExPASy Swiss-Prot
Match: C0LU16 (Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana OX=3702 GN=MED21 PE=1 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.2e-50
Identity = 109/139 (78.42%), Postives = 118/139 (84.89%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSSNYPEPPSQEP-TEDSANIAEQPKL 60
           MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LS NYPEPP+    T+D+    EQPK 
Sbjct: 1   MDIISQLQEQVNTIAAITFNAFGTLQRDAPPVQLSPNYPEPPATTTVTDDATPFPEQPKQ 60

Query: 61  MSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQ 120
           +SA LVKAAKQFD LVAALPLS+GGE  QLKRIAELQ END VGQELQKQLEAAEKELKQ
Sbjct: 61  LSAGLVKAAKQFDALVAALPLSEGGEGAQLKRIAELQVENDLVGQELQKQLEAAEKELKQ 120

Query: 121 VQELFSQVADNCLNLKKAD 139
           VQELF Q ADNCLN+KK +
Sbjct: 121 VQELFGQAADNCLNMKKPE 139

[Close]

BLAST of Moc02g00160 vs. ExPASy Swiss-Prot
Match: Q7ZTI5 (Mediator of RNA polymerase II transcription subunit 21 OS=Danio rerio OX=7955 GN=med21 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.1e-05
Identity = 35/134 (26.12%), Postives = 66/134 (49.25%), Query Frame = 0


Query: 2   DIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSSNYPEPPSQEPTEDSANIAEQPKLMS 61
           D ++QLQ+ VN++A    N  G LQ+ APP   S+        +P+  +   A+   L +
Sbjct: 3   DRLTQLQDAVNSLADQFCNAIGVLQQCAPPASFSNIQTAINKDQPSNPTEEYAQ---LFA 62

Query: 62  AALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQVQ 121
           A + + AK  DVL+ +LP  +     Q   + +L+ EN      L++ +   +  L+++Q
Sbjct: 63  ALIARTAKDVDVLIDSLPSEESTAALQAASLRQLEEENQEAAARLEEVVYRGDALLEKIQ 122

Query: 122 ELFSQVADNCLNLK 136
              + +A + L  +
Sbjct: 123 TALADIAQSQLRTR 133

[Close]

BLAST of Moc02g00160 vs. ExPASy Swiss-Prot
Match: Q2TBU8 (Mediator of RNA polymerase II transcription subunit 21 OS=Bos taurus OX=9913 GN=MED21 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.6e-04
Identity = 38/139 (27.34%), Postives = 68/139 (48.92%), Query Frame = 0


Query: 2   DIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSS-----NYPEPPSQEPTEDSANIAEQ 61
           D ++QLQ+ VN++A    N  G LQ+  PP   S+     N  +P +  PTE+ A     
Sbjct: 3   DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPAN--PTEEYA----- 62

Query: 62  PKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKE 121
            +L +A + + AK  DVL+ +LP  +     Q   + +L+ EN      L+  +   +  
Sbjct: 63  -QLFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATSLEDVVYRGDML 122

Query: 122 LKQVQELFSQVADNCLNLK 136
           L+++Q   + +A + L  +
Sbjct: 123 LEKIQSALADIAQSQLKTR 133

[Close]

BLAST of Moc02g00160 vs. ExPASy Swiss-Prot
Match: Q4R6N3 (Mediator of RNA polymerase II transcription subunit 21 OS=Macaca fascicularis OX=9541 GN=MED21 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 7.7e-04
Identity = 38/139 (27.34%), Postives = 68/139 (48.92%), Query Frame = 0


Query: 2   DIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSS-----NYPEPPSQEPTEDSANIAEQ 61
           D ++QLQ+ VN++A    N  G LQ+  PP   S+     N  +P +  PTE+ A     
Sbjct: 3   DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPAN--PTEEYA----- 62

Query: 62  PKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKE 121
            +L +A + + AK  DVL+ +LP  +     Q   + +L+ EN      L+  +   +  
Sbjct: 63  -QLFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDML 122

Query: 122 LKQVQELFSQVADNCLNLK 136
           L+++Q   + +A + L  +
Sbjct: 123 LEKIQSALADIAQSQLKTR 133

[Close]

BLAST of Moc02g00160 vs. ExPASy Swiss-Prot
Match: Q9CQ39 (Mediator of RNA polymerase II transcription subunit 21 OS=Mus musculus OX=10090 GN=Med21 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 7.7e-04
Identity = 38/139 (27.34%), Postives = 68/139 (48.92%), Query Frame = 0


Query: 2   DIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSS-----NYPEPPSQEPTEDSANIAEQ 61
           D ++QLQ+ VN++A    N  G LQ+  PP   S+     N  +P +  PTE+ A     
Sbjct: 3   DRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPAN--PTEEYA----- 62

Query: 62  PKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKE 121
            +L +A + + AK  DVL+ +LP  +     Q   + +L+ EN      L+  +   +  
Sbjct: 63  -QLFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDML 122

Query: 122 LKQVQELFSQVADNCLNLK 136
           L+++Q   + +A + L  +
Sbjct: 123 LEKIQSALADIAQSQLKTR 133

[Close]

BLAST of Moc02g00160 vs. ExPASy TrEMBL
Match: A0A6J1DHM9 (Mediator of RNA polymerase II transcription subunit 21 OS=Momordica charantia OX=3673 GN=LOC111021179 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.4e-64
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSSNYPEPPSQEPTEDSANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSSNYPEPPSQEPTEDSANIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSSNYPEPPSQEPTEDSANIAEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120
           SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of Moc02g00160 vs. ExPASy TrEMBL
Match: A0A6J1K432 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucurbita maxima OX=3661 GN=LOC111491504 PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 3.8e-62
Identity = 134/138 (97.10%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSSNYPEPPSQEPTEDSANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS NYPEPP  EPTEDSAN AEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120
           SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of Moc02g00160 vs. ExPASy TrEMBL
Match: A0A6J1H2M0 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucurbita moschata OX=3662 GN=LOC111459801 PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 3.8e-62
Identity = 134/138 (97.10%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSSNYPEPPSQEPTEDSANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS NYPEPP  EPTEDSAN AEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120
           SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of Moc02g00160 vs. ExPASy TrEMBL
Match: A0A0A0KZ00 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis sativus OX=3659 GN=Csa_4G268030 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.2e-60
Identity = 131/138 (94.93%), Postives = 133/138 (96.38%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSSNYPEPPSQEPTEDSANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS NYPEPPSQEPTED+A IAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120
           SAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQAEND VGQELQKQL+AAEKEL QV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of Moc02g00160 vs. ExPASy TrEMBL
Match: A0A5A7TEZ9 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00920 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.6e-60
Identity = 131/138 (94.93%), Postives = 133/138 (96.38%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSSNYPEPPSQEPTEDSANIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS NYPEPPSQEPTEDSA IAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60

Query: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120
           SAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQAEND VGQELQKQL+AAE+EL QV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of Moc02g00160 vs. TAIR 10
Match: AT4G04780.1 (mediator 21 )

HSP 1 Score: 199.1 bits (505), Expect = 2.3e-51
Identity = 109/139 (78.42%), Postives = 118/139 (84.89%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSSNYPEPPSQEP-TEDSANIAEQPKL 60
           MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LS NYPEPP+    T+D+    EQPK 
Sbjct: 1   MDIISQLQEQVNTIAAITFNAFGTLQRDAPPVQLSPNYPEPPATTTVTDDATPFPEQPKQ 60

Query: 61  MSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQ 120
           +SA LVKAAKQFD LVAALPLS+GGE  QLKRIAELQ END VGQELQKQLEAAEKELKQ
Sbjct: 61  LSAGLVKAAKQFDALVAALPLSEGGEGAQLKRIAELQVENDLVGQELQKQLEAAEKELKQ 120

Query: 121 VQELFSQVADNCLNLKKAD 139
           VQELF Q ADNCLN+KK +
Sbjct: 121 VQELFGQAADNCLNMKKPE 139

The following BLAST results are available for this feature:

BLAST of Moc02g00160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153730.1	4.9e-64	100.00	mediator of RNA polymerase II transcription subunit 21 [Momordica charantia]	[more]
XP_022958635.1	7.8e-62	97.10	mediator of RNA polymerase II transcription subunit 21 [Cucurbita moschata] >XP_...	[more]
KAG6605829.1	1.3e-61	96.38	Mediator of RNA polymerase II transcription subunit 21, partial [Cucurbita argyr...	[more]
XP_038902781.1	3.0e-61	96.38	mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida]	[more]
XP_023532119.1	5.1e-61	95.65	mediator of RNA polymerase II transcription subunit 21 [Cucurbita pepo subsp. pe...	[more]

BLAST of Moc02g00160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
C0LU16	3.2e-50	78.42	Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana O...	[more]
Q7ZTI5	4.1e-05	26.12	Mediator of RNA polymerase II transcription subunit 21 OS=Danio rerio OX=7955 GN...	[more]
Q2TBU8	2.6e-04	27.34	Mediator of RNA polymerase II transcription subunit 21 OS=Bos taurus OX=9913 GN=...	[more]
Q4R6N3	7.7e-04	27.34	Mediator of RNA polymerase II transcription subunit 21 OS=Macaca fascicularis OX...	[more]
Q9CQ39	7.7e-04	27.34	Mediator of RNA polymerase II transcription subunit 21 OS=Mus musculus OX=10090 ...	[more]

BLAST of Moc02g00160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DHM9	2.4e-64	100.00	Mediator of RNA polymerase II transcription subunit 21 OS=Momordica charantia OX...	[more]
A0A6J1K432	3.8e-62	97.10	Mediator of RNA polymerase II transcription subunit 21 OS=Cucurbita maxima OX=36...	[more]
A0A6J1H2M0	3.8e-62	97.10	Mediator of RNA polymerase II transcription subunit 21 OS=Cucurbita moschata OX=...	[more]
A0A0A0KZ00	1.2e-60	94.93	Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis sativus OX=365...	[more]
A0A5A7TEZ9	1.6e-60	94.93	Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo var. maku...	[more]

BLAST of Moc02g00160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G04780.1	2.3e-51	78.42	mediator 21	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 85..130
None	No IPR available	GENE3D	6.10.280.10	Mediator complex, subunit Med21	coord: 1..130 e-value: 5.6E-29 score: 102.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..51
IPR021384	Mediator complex, subunit Med21	PFAM	PF11221	Med21	coord: 1..128 e-value: 5.3E-28 score: 98.1
IPR021384	Mediator complex, subunit Med21	PANTHER	PTHR13381	RNA POLYMERASE II HOLOENZYME COMPONENT SRB7	coord: 1..136
IPR037212	Mediator complex, subunit Med7/Med21-like	SUPERFAMILY	140718	Mediator hinge subcomplex-like	coord: 1..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc02g00160.1	Moc02g00160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0043078	polar nucleus
molecular_function	GO:0003712	transcription coregulator activity