Moc01g33610 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc01g33610
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	F-box protein SKIP19-like
Location	chr1: 23675154 .. 23676107 (+)
RNA-Seq Expression	Moc01g33610
Synteny	Moc01g33610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCGGAAGCGTAAGATAGCGAGGAACTGGCTTGAACTGCCTGCAGAAGTCATGTCCACGATTATGCTGAAGCTAGGCGCCATTGAAATCCTCACCAGCGCCCAATTCGTTTGCTCTTCGTGGAACAAGATCTGCAAGGACCCTTCCATGTGGCGCGTCATCGATATGCACAATCTGGGTGATTTACATGACATGGAATACAATTTGGAGATCATGTGTATGCACGCTGTTTTCCGTACTCGTGGCCAATTGGACGACATCAACATCGAGTACTTTGGCACCGATGACTTGCTCCGTTACATCACTCGGAGGTATCTTCTAACAGAAATCAACCTAAATCCTTGTGTAGTTGCTGTGATAATTTCAAATTTTCTGTTTTTGTTCTGATGCTTGTTCTGTTTCTGAAATTTGCATGTAATACAAATCAGAGATGCCCCAATTCCATACCCAACAGATCAAACAATTGGGACTTAACATGAGTAGTCTATTAAAGTAATTCTACCATTGCCACTGTCATTGGAAGTTGTACCCAATGGAGCATATGCAATTCCATTTGTTTTTCTTATATTTGTCTTCAATTTAATAGAAAAGAAATTTCAAGTGGGCAGGATGGAACTGAAGATTCTTTTGGACTGTTTTTTTTGTTGACAGATTTTCTCTGATGGTCTGTGTTTTTCTTTTTCATGAGTTCAGATTCCGTTGATCTTGATGTTTGAAGTTTCTTTCTGTGTATTAACTTGTTGCAGCACCAATCAACTTAGAAGACTCCGGATTGCAGTTTGCTATGACATCTCAGATAAGGGATTGACCAAAGCAGTTTTGAAACTTCCATTGTTGGAGCATCTTGAAATATTTCTCTGTTCATTTTCTGCTAAAACTTTGAAAATGGTTGGACAGTGTTGCCCCCTTCTGAAAACATTGAAACTGAACAACCAGTTTTGCAAGGGATGA

mRNA sequence

ATGAAGCGGAAGCGTAAGATAGCGAGGAACTGGCTTGAACTGCCTGCAGAAGTCATGTCCACGATTATGCTGAAGCTAGGCGCCATTGAAATCCTCACCAGCGCCCAATTCGTTTGCTCTTCGTGGAACAAGATCTGCAAGGACCCTTCCATGTGGCGCGTCATCGATATGCACAATCTGGGTGATTTACATGACATGGAATACAATTTGGAGATCATGTGTATGCACGCTGTTTTCCGTACTCGTGGCCAATTGGACGACATCAACATCGAGTACTTTGGCACCGATGACTTGCTCCGTTACATCACTCGGAGCACCAATCAACTTAGAAGACTCCGGATTGCAGTTTGCTATGACATCTCAGATAAGGGATTGACCAAAGCAGTTTTGAAACTTCCATTGTTGGAGCATCTTGAAATATTTCTCTGTTCATTTTCTGCTAAAACTTTGAAAATGGTTGGACAGTGTTGCCCCCTTCTGAAAACATTGAAACTGAACAACCAGTTTTGCAAGGGATGA

Coding sequence (CDS)

ATGAAGCGGAAGCGTAAGATAGCGAGGAACTGGCTTGAACTGCCTGCAGAAGTCATGTCCACGATTATGCTGAAGCTAGGCGCCATTGAAATCCTCACCAGCGCCCAATTCGTTTGCTCTTCGTGGAACAAGATCTGCAAGGACCCTTCCATGTGGCGCGTCATCGATATGCACAATCTGGGTGATTTACATGACATGGAATACAATTTGGAGATCATGTGTATGCACGCTGTTTTCCGTACTCGTGGCCAATTGGACGACATCAACATCGAGTACTTTGGCACCGATGACTTGCTCCGTTACATCACTCGGAGCACCAATCAACTTAGAAGACTCCGGATTGCAGTTTGCTATGACATCTCAGATAAGGGATTGACCAAAGCAGTTTTGAAACTTCCATTGTTGGAGCATCTTGAAATATTTCTCTGTTCATTTTCTGCTAAAACTTTGAAAATGGTTGGACAGTGTTGCCCCCTTCTGAAAACATTGAAACTGAACAACCAGTTTTGCAAGGGATGA

Protein sequence

MKRKRKIARNWLELPAEVMSTIMLKLGAIEILTSAQFVCSSWNKICKDPSMWRVIDMHNLGDLHDMEYNLEIMCMHAVFRTRGQLDDINIEYFGTDDLLRYITRSTNQLRRLRIAVCYDISDKGLTKAVLKLPLLEHLEIFLCSFSAKTLKMVGQCCPLLKTLKLNNQFCKG

Homology

[Close]

BLAST of Moc01g33610 vs. NCBI nr
Match: XP_022146498.1 (F-box protein SKIP19-like isoform X2 [Momordica charantia])

HSP 1 Score: 354.0 bits (907), Expect = 7.4e-94
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MKRKRKIARNWLELPAEVMSTIMLKLGAIEILTSAQFVCSSWNKICKDPSMWRVIDMHNL 60
           MKRKRKIARNWLELPAEVMSTIMLKLGAIEILTSAQFVCSSWNKICKDPSMWRVIDMHNL
Sbjct: 1   MKRKRKIARNWLELPAEVMSTIMLKLGAIEILTSAQFVCSSWNKICKDPSMWRVIDMHNL 60

Query: 61  GDLHDMEYNLEIMCMHAVFRTRGQLDDINIEYFGTDDLLRYITRSTNQLRRLRIAVCYDI 120
           GDLHDMEYNLEIMCMHAVFRTRGQLDDINIEYFGTDDLLRYITRSTNQLRRLRIAVCYDI
Sbjct: 61  GDLHDMEYNLEIMCMHAVFRTRGQLDDINIEYFGTDDLLRYITRSTNQLRRLRIAVCYDI 120

Query: 121 SDKGLTKAVLKLPLLEHLEIFLCSFSAKTLKMVGQCCPLLKTLKLNNQFCKG 173
           SDKGLTKAVLKLPLLEHLEIFLCSFSAKTLKMVGQCCPLLKTLKLNNQFCKG
Sbjct: 121 SDKGLTKAVLKLPLLEHLEIFLCSFSAKTLKMVGQCCPLLKTLKLNNQFCKG 172

[Close]

BLAST of Moc01g33610 vs. NCBI nr
Match: XP_038883506.1 (F-box protein SKIP19-like [Benincasa hispida])

HSP 1 Score: 250.8 bits (639), Expect = 8.8e-63
Identity = 121/158 (76.58%), Postives = 141/158 (89.24%), Query Frame = 0


Query: 8   ARNWLELPAEVMSTIMLKLGAIEILTSAQFVCSSWNKICKDPSMWRVIDMHNLGDLHDME 67
           ARNWL+LPAEVMS I+LKLGAIEILTSAQ VCSSW KICKDP MWRVIDM N G+L+DM+
Sbjct: 13  ARNWLDLPAEVMSMILLKLGAIEILTSAQNVCSSWRKICKDPLMWRVIDMRNSGNLYDMD 72

Query: 68  YNLEIMCMHAVFRTRGQLDDINIEYFGTDDLLRYITRSTNQLRRLRIAVCYDISDKGLTK 127
           ++LEIMC HAV R+ GQL DINIEYFGTD+LL+YIT+S+NQLRRLR+A CYDISD+GLT+
Sbjct: 73  HDLEIMCRHAVDRSCGQLIDINIEYFGTDELLQYITQSSNQLRRLRLADCYDISDEGLTE 132

Query: 128 AVLKLPLLEHLEIFLCSFSAKTLKMVGQCCPLLKTLKL 166
           A+ +LPLLEHLEIF+ SF  +TLK VG+CCPLLK LKL
Sbjct: 133 AISRLPLLEHLEIFIYSFDVETLKTVGRCCPLLKWLKL 170

[Close]

BLAST of Moc01g33610 vs. NCBI nr
Match: XP_022146630.1 (F-box protein SKIP19-like [Momordica charantia])

HSP 1 Score: 231.1 bits (588), Expect = 7.2e-57
Identity = 112/164 (68.29%), Postives = 140/164 (85.37%), Query Frame = 0


Query: 8   ARNWLELPAEVMSTIMLKLGAIEILTSAQFVCSSWNKICKDPSMWRVIDMHNLGDLHDME 67
           ARNWLELPA++ S I+LKLGAIEIL+SAQ VCS W KICKDP MWRV+DMHN+G+  DM+
Sbjct: 11  ARNWLELPADITSMILLKLGAIEILSSAQSVCSLWRKICKDPLMWRVVDMHNMGE-WDMD 70

Query: 68  YNLEIMCMHAVFRTRGQLDDINIEYFGTDDLLRYITRSTNQLRRLRIAVCYDISDKGLTK 127
           Y+LE MC+ AV R+ G+L DINI+YFGT++LL+YIT+S+NQLRRLRI  C+ I+D GL++
Sbjct: 71  YDLEQMCIQAVDRSCGELIDINIQYFGTNELLQYITQSSNQLRRLRIVRCHSITDTGLSE 130

Query: 128 AVLKLPLLEHLEIFLCSFSAKTLKMVGQCCPLLKTLKLNNQFCK 172
           AV KLPLLEHLEI LCSF+ KTL+ VG+CC LLK+LKL+ Q C+
Sbjct: 131 AVSKLPLLEHLEISLCSFTEKTLETVGRCCRLLKSLKLDCQDCR 173

[Close]

BLAST of Moc01g33610 vs. NCBI nr
Match: XP_021661102.1 (F-box protein SKIP19-like [Hevea brasiliensis])

HSP 1 Score: 224.6 bits (571), Expect = 6.7e-55
Identity = 104/163 (63.80%), Postives = 129/163 (79.14%), Query Frame = 0


Query: 9   RNWLELPAEVMSTIMLKLGAIEILTSAQFVCSSWNKICKDPSMWRVIDMHNLGDLHDMEY 68
           RNW+ELP +V ++I+ KLGAIEILTSAQ VCS+W  ICKDPSMWR IDMHNLGDL DM+Y
Sbjct: 55  RNWVELPRDVTASILWKLGAIEILTSAQLVCSTWRSICKDPSMWRSIDMHNLGDLWDMDY 114

Query: 69  NLEIMCMHAVFRTRGQLDDINIEYFGTDDLLRYITRSTNQLRRLRIAVCYDISDKGLTKA 128
           +L  MC HAV R+ G L D+NIEYFGTDDLL+YI   ++ L+RLR+  CY ISD+GL++ 
Sbjct: 115 DLGRMCRHAVDRSSGGLVDVNIEYFGTDDLLQYIADRSSHLKRLRLVCCYSISDEGLSEV 174

Query: 129 VLKLPLLEHLEIFLCSFSAKTLKMVGQCCPLLKTLKLNNQFCK 172
             K PLLE L+I  CS S + L++VG+CCPLLK+ KLNNQ C+
Sbjct: 175 ATKFPLLEELDISYCSLSKQALEVVGRCCPLLKSFKLNNQGCR 217

[Close]

BLAST of Moc01g33610 vs. NCBI nr
Match: KAB1222722.1 (F-box protein SKIP19 [Morella rubra] >KAB1222796.1 F-box protein SKIP19 [Morella rubra])

HSP 1 Score: 221.9 bits (564), Expect = 4.4e-54
Identity = 107/160 (66.88%), Postives = 129/160 (80.62%), Query Frame = 0


Query: 9   RNWLELPAEVMSTIMLKLGAIEILTSAQFVCSSWNKICKDPSMWRVIDMHNLGDLHDMEY 68
           RNWLELP +V ++I+LKLGAIEILTSAQ VCS W  ICKDPSMWR +DM NLGDL   EY
Sbjct: 13  RNWLELPRDVTASILLKLGAIEILTSAQNVCSLWRNICKDPSMWRAVDMRNLGDL-PYEY 72

Query: 69  NLEIMCMHAVFRTRGQLDDINIEYFGTDDLLRYITRSTNQLRRLRIAVCYDISDKGLTKA 128
           + E MC HAV R+ G+L DINIEYFGTD+LL+YIT S++QLRRLR+  CY ISD+GL++A
Sbjct: 73  DFEKMCEHAVDRSGGELVDINIEYFGTDELLKYITESSSQLRRLRLVCCYSISDEGLSEA 132

Query: 129 VLKLPLLEHLEIFLCSFSAKTLKMVGQCCPLLKTLKLNNQ 169
             KLPLLE L+   CS S ++L+ VG+CCPLLK+LK NNQ
Sbjct: 133 AEKLPLLEELDFSYCSLSKESLEAVGRCCPLLKSLKFNNQ 171

[Close]

BLAST of Moc01g33610 vs. ExPASy Swiss-Prot
Match: Q9M0U9 (F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.8e-50
Identity = 98/157 (62.42%), Postives = 119/157 (75.80%), Query Frame = 0


Query: 10  NWLELPAEVMSTIMLKLGAIEILTSAQFVCSSWNKICKDPSMWRVIDMHNLGDLHDMEYN 69
           NW ELP E+ S I+ +LGAIEIL +AQ VC SW ++CKDPSMWR IDMHNLGDL DM+YN
Sbjct: 18  NWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGDLDDMDYN 77

Query: 70  LEIMCMHAVFRTRGQLDDINIEYFGTDDLLRYITRSTNQLRRLRIAVCYDISDKGLTKAV 129
           LEIMC HAV R++G L DI I YFGT DLL YI   ++ LR LR+  C  I+D G  +AV
Sbjct: 78  LEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQITDDGFVEAV 137

Query: 130 LKLPLLEHLEIFLCSFSAKTLKMVGQCCPLLKTLKLN 167
           +KLP LE LE+  CSFS ++L++VGQCC  +KTLKLN
Sbjct: 138 VKLP-LEELELSYCSFSVESLRVVGQCCLNMKTLKLN 173

[Close]

BLAST of Moc01g33610 vs. ExPASy Swiss-Prot
Match: Q9S9V9 (Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 3.3e-44
Identity = 85/163 (52.15%), Postives = 119/163 (73.01%), Query Frame = 0


Query: 4   KRKIARNWLELPAEVMSTIMLKLGAIEILTSAQFVCSSWNKICKDPSMWRVIDMHNLGDL 63
           K K  RNW ELP+++ S+I+L+LGAIEIL +AQ VC  W+++CKDPSMWR ID+ N  D 
Sbjct: 174 KDKKLRNWAELPSKLTSSILLRLGAIEILQNAQKVCKPWHRVCKDPSMWRKIDIDNRNDR 233

Query: 64  HDMEYNLEIMCMHAVFRTRGQLDDINIEYFGTDDLLRYITRSTNQLRRLRIAVCYDISDK 123
              +Y+LE MC HAV R+ G L +I I Y+GT+DL+ YI   ++ L+ L +  C+ I+D+
Sbjct: 234 AAFKYDLESMCRHAVDRSHGGLIEIEIWYYGTNDLIMYIADRSSNLKSLGLVRCFPITDE 293

Query: 124 GLTKAVLKLPLLEHLEIFLCSFSAKTLKMVGQCCPLLKTLKLN 167
           G+ KAV K+PLLE+LE+  C FS ++L+ +G+ CP LKTLKLN
Sbjct: 294 GVAKAVSKVPLLEYLEVSYCLFSGESLRDIGRSCPNLKTLKLN 336

[Close]

BLAST of Moc01g33610 vs. ExPASy Swiss-Prot
Match: Q9S9V8 (Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana OX=3702 GN=FBL9 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 8.1e-35
Identity = 77/162 (47.53%), Postives = 108/162 (66.67%), Query Frame = 0


Query: 9   RNWLELPAEVMSTIMLKLGAIEILTSAQFVCSSWNKICKDPSMWRVIDM---HNLGDLHD 68
           RNW ELP E+ S+I+L+LGAIEIL +AQ VC SW ++C+DPSMWR ID+    NL +  +
Sbjct: 19  RNWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVNSVE 78

Query: 69  MEYNLEIMCMHAVFRTRGQLDDINIEYFGTDDLLRYITRSTNQLRRLRIAVCYDISDKGL 128
           + Y +E +C  AV  ++G L +INI+Y      L YI   ++ LRRL +  C  +  +G+
Sbjct: 79  LFYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAPVLSRGV 138

Query: 129 TKAVLKLPLLEHLEI-FLCSFSAKTLKMVGQCCPLLKTLKLN 167
            +A +KLPLLE L+I +  S   + LK+VGQ CP L+TLKLN
Sbjct: 139 VEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLN 180

[Close]

BLAST of Moc01g33610 vs. ExPASy Swiss-Prot
Match: Q9M0U6 (Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana OX=3702 GN=FBL22 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.2e-30
Identity = 71/158 (44.94%), Postives = 102/158 (64.56%), Query Frame = 0


Query: 10  NWLELPAEVMSTIMLKLGAIEILTSAQFVCSSWNKICKDPSMWRVIDMHNLGDLHDMEYN 69
           NW ELP +++S+I+L+L  +EIL +A+ VC SW ++ KDP +WR IDM NL  L+ + Y 
Sbjct: 26  NWAELPPDLLSSILLRLSPLEILENARKVCRSWRRVSKDPLIWRRIDMRNLRRLYCI-YA 85

Query: 70  LEIMCMHAVFRTRGQLDDINIEY--FGTDDLLRYITRSTNQLRRLRIAVCYDISDKGLTK 129
           +E  C H V  ++G L + NI+   F T  LL Y+   ++ LRRLR+     I+  G+ +
Sbjct: 86  MEACCRHVVDLSQGGLLEFNIDQWRFQTTSLLNYMAERSSNLRRLRVK-GGQITSVGIFE 145

Query: 130 AVLKLPLLEHLEIFLCSFSAKTLKMVGQCCPLLKTLKL 166
           A++KLPLLE LE+  CS   +  K +GQ CP LKTLKL
Sbjct: 146 AIVKLPLLEELELLYCSIEEEHFKTIGQACPNLKTLKL 181

[Close]

BLAST of Moc01g33610 vs. ExPASy Swiss-Prot
Match: Q9M0U7 (Putative F-box protein At4g05475 OS=Arabidopsis thaliana OX=3702 GN=At4g05475 PE=4 SV=2)

HSP 1 Score: 134.0 bits (336), Expect = 1.6e-30
Identity = 71/158 (44.94%), Postives = 102/158 (64.56%), Query Frame = 0


Query: 10  NWLELPAEVMSTIMLKLGAIEILTSAQFVCSSWNKICKDPSMWRVIDMHNLGDLHDMEYN 69
           NW++LP E+ ++I+L+L   +IL +A+ +C +W +ICKDPSMWR I   NL D    E++
Sbjct: 39  NWVDLPPELTTSILLRLSVTDILDNARKLCRAWRRICKDPSMWRKI---NLRDCLMYEFD 98

Query: 70  LEIMCMHAVFRTRGQLDDINIEYFGTDDLLRYITRSTNQLRRLRIAVCYDISDKGLTKAV 129
            E MC H V  ++G L +INIE+F +D LL YI   +  L+ L I++   +++KG+   +
Sbjct: 99  FESMCRHIVDLSQGGLLEINIEHFVSDSLLSYIVDRSCNLKSLGISIYEPMTNKGVMNGI 158

Query: 130 LKLPLLEHLEIFLCSFSAKTLKMVGQCCPLLKTLKLNN 168
            KLPLLE L IF  S     LK +G  CP LKTLKLN+
Sbjct: 159 EKLPLLETLVIFHSSIKL-DLKAIGHACPQLKTLKLNS 192

[Close]

BLAST of Moc01g33610 vs. ExPASy TrEMBL
Match: A0A6J1CYR2 (F-box protein SKIP19-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111015699 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 3.6e-94
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MKRKRKIARNWLELPAEVMSTIMLKLGAIEILTSAQFVCSSWNKICKDPSMWRVIDMHNL 60
           MKRKRKIARNWLELPAEVMSTIMLKLGAIEILTSAQFVCSSWNKICKDPSMWRVIDMHNL
Sbjct: 1   MKRKRKIARNWLELPAEVMSTIMLKLGAIEILTSAQFVCSSWNKICKDPSMWRVIDMHNL 60

Query: 61  GDLHDMEYNLEIMCMHAVFRTRGQLDDINIEYFGTDDLLRYITRSTNQLRRLRIAVCYDI 120
           GDLHDMEYNLEIMCMHAVFRTRGQLDDINIEYFGTDDLLRYITRSTNQLRRLRIAVCYDI
Sbjct: 61  GDLHDMEYNLEIMCMHAVFRTRGQLDDINIEYFGTDDLLRYITRSTNQLRRLRIAVCYDI 120

Query: 121 SDKGLTKAVLKLPLLEHLEIFLCSFSAKTLKMVGQCCPLLKTLKLNNQFCKG 173
           SDKGLTKAVLKLPLLEHLEIFLCSFSAKTLKMVGQCCPLLKTLKLNNQFCKG
Sbjct: 121 SDKGLTKAVLKLPLLEHLEIFLCSFSAKTLKMVGQCCPLLKTLKLNNQFCKG 172

[Close]

BLAST of Moc01g33610 vs. ExPASy TrEMBL
Match: A0A6J1CXS5 (F-box protein SKIP19-like OS=Momordica charantia OX=3673 GN=LOC111015784 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 3.5e-57
Identity = 112/164 (68.29%), Postives = 140/164 (85.37%), Query Frame = 0


Query: 8   ARNWLELPAEVMSTIMLKLGAIEILTSAQFVCSSWNKICKDPSMWRVIDMHNLGDLHDME 67
           ARNWLELPA++ S I+LKLGAIEIL+SAQ VCS W KICKDP MWRV+DMHN+G+  DM+
Sbjct: 11  ARNWLELPADITSMILLKLGAIEILSSAQSVCSLWRKICKDPLMWRVVDMHNMGE-WDMD 70

Query: 68  YNLEIMCMHAVFRTRGQLDDINIEYFGTDDLLRYITRSTNQLRRLRIAVCYDISDKGLTK 127
           Y+LE MC+ AV R+ G+L DINI+YFGT++LL+YIT+S+NQLRRLRI  C+ I+D GL++
Sbjct: 71  YDLEQMCIQAVDRSCGELIDINIQYFGTNELLQYITQSSNQLRRLRIVRCHSITDTGLSE 130

Query: 128 AVLKLPLLEHLEIFLCSFSAKTLKMVGQCCPLLKTLKLNNQFCK 172
           AV KLPLLEHLEI LCSF+ KTL+ VG+CC LLK+LKL+ Q C+
Sbjct: 131 AVSKLPLLEHLEISLCSFTEKTLETVGRCCRLLKSLKLDCQDCR 173

[Close]

BLAST of Moc01g33610 vs. ExPASy TrEMBL
Match: A0A6A1WBR6 (F-box protein SKIP19 OS=Morella rubra OX=262757 GN=CJ030_MR2G022161 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 2.1e-54
Identity = 107/160 (66.88%), Postives = 129/160 (80.62%), Query Frame = 0


Query: 9   RNWLELPAEVMSTIMLKLGAIEILTSAQFVCSSWNKICKDPSMWRVIDMHNLGDLHDMEY 68
           RNWLELP +V ++I+LKLGAIEILTSAQ VCS W  ICKDPSMWR +DM NLGDL   EY
Sbjct: 13  RNWLELPRDVTASILLKLGAIEILTSAQNVCSLWRNICKDPSMWRAVDMRNLGDL-PYEY 72

Query: 69  NLEIMCMHAVFRTRGQLDDINIEYFGTDDLLRYITRSTNQLRRLRIAVCYDISDKGLTKA 128
           + E MC HAV R+ G+L DINIEYFGTD+LL+YIT S++QLRRLR+  CY ISD+GL++A
Sbjct: 73  DFEKMCEHAVDRSGGELVDINIEYFGTDELLKYITESSSQLRRLRLVCCYSISDEGLSEA 132

Query: 129 VLKLPLLEHLEIFLCSFSAKTLKMVGQCCPLLKTLKLNNQ 169
             KLPLLE L+   CS S ++L+ VG+CCPLLK+LK NNQ
Sbjct: 133 AEKLPLLEELDFSYCSLSKESLEAVGRCCPLLKSLKFNNQ 171

[Close]

BLAST of Moc01g33610 vs. ExPASy TrEMBL
Match: A0A6J1CYW9 (putative F-box/LRR-repeat protein 23 OS=Momordica charantia OX=3673 GN=LOC111015857 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 1.0e-53
Identity = 109/167 (65.27%), Postives = 131/167 (78.44%), Query Frame = 0


Query: 8   ARNWLELPAEVMSTIMLKLGAIEILTSAQFVCSSWNKICKDPSMWRVIDMHNLGDLHDME 67
           ARNWLELPA+  S I++KLGA++IL++AQ VCS W KIC DP MWRV+DM NL D  DM+
Sbjct: 13  ARNWLELPADTTSMILMKLGAVDILSNAQIVCSLWRKICYDPLMWRVVDMRNLDDSLDMD 72

Query: 68  YNLEIMCMHAVFRTRGQLDDINIEYFGTDDLLRYITRSTNQLRRLRIAVCYDISDKGLTK 127
            +LE MCM AV R+ GQL DINIE FGTD+LL YI +S+NQLRRLR+  C+DIS KGL +
Sbjct: 73  KDLEKMCMQAVDRSCGQLVDINIERFGTDELLHYIAQSSNQLRRLRLVYCHDISGKGLAE 132

Query: 128 AVLKLPLLEHLEIFLC--SFSAKTLKMVGQCCPLLKTLKLNNQFCKG 173
           AV KLPLLE LEIF    SF  +TLK VG+CCPLL +LKL+N+ CKG
Sbjct: 133 AVPKLPLLEDLEIFFSFDSFDMETLKTVGRCCPLLNSLKLHNRNCKG 179

[Close]

BLAST of Moc01g33610 vs. ExPASy TrEMBL
Match: A0A5B6ZSQ6 (Putative F-box protein SKIP19-like (Fragment) OS=Davidia involucrata OX=16924 GN=Din_016981 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 3.1e-53
Identity = 103/160 (64.38%), Postives = 125/160 (78.12%), Query Frame = 0


Query: 9   RNWLELPAEVMSTIMLKLGAIEILTSAQFVCSSWNKICKDPSMWRVIDMHNLGDLHDMEY 68
           RNWLELP +VM+ I+ +LGAI ILT AQ VC +W  ICKDP+MWR IDM NLGDL DMEY
Sbjct: 4   RNWLELPPDVMAMILHRLGAINILTVAQKVCMTWRNICKDPAMWRTIDMQNLGDLWDMEY 63

Query: 69  NLEIMCMHAVFRTRGQLDDINIEYFGTDDLLRYITRSTNQLRRLRIAVCYDISDKGLTKA 128
           +LE M  HA+ R+ GQL DIN+EYFGTD+LL+YIT  T+QLRRLR+  CY IS++GL+ A
Sbjct: 64  DLEKMARHAIDRSCGQLVDINVEYFGTDELLQYITDRTSQLRRLRLVCCYSISEEGLSDA 123

Query: 129 VLKLPLLEHLEIFLCSFSAKTLKMVGQCCPLLKTLKLNNQ 169
             KLPLLE L I+ CS S +  + VG+CCPLLK+ KLNNQ
Sbjct: 124 AKKLPLLEELHIYYCSISKEAFETVGRCCPLLKSFKLNNQ 163

[Close]

BLAST of Moc01g33610 vs. TAIR 10
Match: AT4G05460.1 (RNI-like superfamily protein )

HSP 1 Score: 200.3 bits (508), Expect = 1.3e-51
Identity = 98/157 (62.42%), Postives = 119/157 (75.80%), Query Frame = 0


Query: 10  NWLELPAEVMSTIMLKLGAIEILTSAQFVCSSWNKICKDPSMWRVIDMHNLGDLHDMEYN 69
           NW ELP E+ S I+ +LGAIEIL +AQ VC SW ++CKDPSMWR IDMHNLGDL DM+YN
Sbjct: 18  NWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGDLDDMDYN 77

Query: 70  LEIMCMHAVFRTRGQLDDINIEYFGTDDLLRYITRSTNQLRRLRIAVCYDISDKGLTKAV 129
           LEIMC HAV R++G L DI I YFGT DLL YI   ++ LR LR+  C  I+D G  +AV
Sbjct: 78  LEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQITDDGFVEAV 137

Query: 130 LKLPLLEHLEIFLCSFSAKTLKMVGQCCPLLKTLKLN 167
           +KLP LE LE+  CSFS ++L++VGQCC  +KTLKLN
Sbjct: 138 VKLP-LEELELSYCSFSVESLRVVGQCCLNMKTLKLN 173

[Close]

BLAST of Moc01g33610 vs. TAIR 10
Match: AT4G05497.1 (RNI-like superfamily protein )

HSP 1 Score: 148.3 bits (373), Expect = 5.7e-36
Identity = 77/162 (47.53%), Postives = 108/162 (66.67%), Query Frame = 0


Query: 9   RNWLELPAEVMSTIMLKLGAIEILTSAQFVCSSWNKICKDPSMWRVIDM---HNLGDLHD 68
           RNW ELP E+ S+I+L+LGAIEIL +AQ VC SW ++C+DPSMWR ID+    NL +  +
Sbjct: 19  RNWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVNSVE 78

Query: 69  MEYNLEIMCMHAVFRTRGQLDDINIEYFGTDDLLRYITRSTNQLRRLRIAVCYDISDKGL 128
           + Y +E +C  AV  ++G L +INI+Y      L YI   ++ LRRL +  C  +  +G+
Sbjct: 79  LFYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAPVLSRGV 138

Query: 129 TKAVLKLPLLEHLEI-FLCSFSAKTLKMVGQCCPLLKTLKLN 167
            +A +KLPLLE L+I +  S   + LK+VGQ CP L+TLKLN
Sbjct: 139 VEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLN 180

[Close]

BLAST of Moc01g33610 vs. TAIR 10
Match: AT4G05490.1 (RNI-like superfamily protein )

HSP 1 Score: 134.4 bits (337), Expect = 8.5e-32
Identity = 71/158 (44.94%), Postives = 102/158 (64.56%), Query Frame = 0


Query: 10  NWLELPAEVMSTIMLKLGAIEILTSAQFVCSSWNKICKDPSMWRVIDMHNLGDLHDMEYN 69
           NW ELP +++S+I+L+L  +EIL +A+ VC SW ++ KDP +WR IDM NL  L+ + Y 
Sbjct: 26  NWAELPPDLLSSILLRLSPLEILENARKVCRSWRRVSKDPLIWRRIDMRNLRRLYCI-YA 85

Query: 70  LEIMCMHAVFRTRGQLDDINIEY--FGTDDLLRYITRSTNQLRRLRIAVCYDISDKGLTK 129
           +E  C H V  ++G L + NI+   F T  LL Y+   ++ LRRLR+     I+  G+ +
Sbjct: 86  MEACCRHVVDLSQGGLLEFNIDQWRFQTTSLLNYMAERSSNLRRLRVK-GGQITSVGIFE 145

Query: 130 AVLKLPLLEHLEIFLCSFSAKTLKMVGQCCPLLKTLKL 166
           A++KLPLLE LE+  CS   +  K +GQ CP LKTLKL
Sbjct: 146 AIVKLPLLEELELLYCSIEEEHFKTIGQACPNLKTLKL 181

[Close]

BLAST of Moc01g33610 vs. TAIR 10
Match: AT4G05475.1 (RNI-like superfamily protein )

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-31
Identity = 71/158 (44.94%), Postives = 102/158 (64.56%), Query Frame = 0


Query: 10  NWLELPAEVMSTIMLKLGAIEILTSAQFVCSSWNKICKDPSMWRVIDMHNLGDLHDMEYN 69
           NW++LP E+ ++I+L+L   +IL +A+ +C +W +ICKDPSMWR I   NL D    E++
Sbjct: 39  NWVDLPPELTTSILLRLSVTDILDNARKLCRAWRRICKDPSMWRKI---NLRDCLMYEFD 98

Query: 70  LEIMCMHAVFRTRGQLDDINIEYFGTDDLLRYITRSTNQLRRLRIAVCYDISDKGLTKAV 129
            E MC H V  ++G L +INIE+F +D LL YI   +  L+ L I++   +++KG+   +
Sbjct: 99  FESMCRHIVDLSQGGLLEINIEHFVSDSLLSYIVDRSCNLKSLGISIYEPMTNKGVMNGI 158

Query: 130 LKLPLLEHLEIFLCSFSAKTLKMVGQCCPLLKTLKLNN 168
            KLPLLE L IF  S     LK +G  CP LKTLKLN+
Sbjct: 159 EKLPLLETLVIFHSSIKL-DLKAIGHACPQLKTLKLNS 192

[Close]

BLAST of Moc01g33610 vs. TAIR 10
Match: AT4G05470.1 (RNI-like superfamily protein )

HSP 1 Score: 122.1 bits (305), Expect = 4.4e-28
Identity = 71/164 (43.29%), Postives = 100/164 (60.98%), Query Frame = 0


Query: 6   KIARNWLELPAEVMSTIMLKLGAIEILTSAQFVCSSWNKICKDPSMWRVIDMHNLGDLHD 65
           K  RNW++LP E+ ++I+L+L   +IL +AQ VC  W +ICKDPSMWR I   N  D   
Sbjct: 41  KERRNWVDLPPELTTSILLRLSLTDILDNAQKVCKEWRRICKDPSMWRKI---NTRDCLM 100

Query: 66  MEYNLEIMCMHAVFRTRGQLDDINI-EYFGTDDLLRYITRSTNQLRRLRIAVCYD-ISDK 125
             ++   MC H V  ++G L +IN+ E+F +D LL YIT     LR L + +C+  ++  
Sbjct: 101 YNFDFVSMCRHIVDLSQGGLLEINVDEHFLSDSLLSYIT--DRNLRSLGLGMCFPRVTKL 160

Query: 126 GLTKAVLKLPLLEHLEIFLCSFSAKTLKMVGQCCPLLKTLKLNN 168
           G+  A+ K+PLLE LE+   S     LK +G  CP LKTLKLN+
Sbjct: 161 GVVNAIAKIPLLETLEV-THSCIKLDLKAIGHACPQLKTLKLNS 198

The following BLAST results are available for this feature:

BLAST of Moc01g33610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146498.1	7.4e-94	100.00	F-box protein SKIP19-like isoform X2 [Momordica charantia]	[more]
XP_038883506.1	8.8e-63	76.58	F-box protein SKIP19-like [Benincasa hispida]	[more]
XP_022146630.1	7.2e-57	68.29	F-box protein SKIP19-like [Momordica charantia]	[more]
XP_021661102.1	6.7e-55	63.80	F-box protein SKIP19-like [Hevea brasiliensis]	[more]
KAB1222722.1	4.4e-54	66.88	F-box protein SKIP19 [Morella rubra] >KAB1222796.1 F-box protein SKIP19 [Morella...	[more]

BLAST of Moc01g33610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0U9	1.8e-50	62.42	F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1	[more]
Q9S9V9	3.3e-44	52.15	Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE...	[more]
Q9S9V8	8.1e-35	47.53	Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana OX=3702 GN=FBL9 PE=4...	[more]
Q9M0U6	1.2e-30	44.94	Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana OX=3702 GN=FBL22 PE...	[more]
Q9M0U7	1.6e-30	44.94	Putative F-box protein At4g05475 OS=Arabidopsis thaliana OX=3702 GN=At4g05475 PE...	[more]

BLAST of Moc01g33610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CYR2	3.6e-94	100.00	F-box protein SKIP19-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A6J1CXS5	3.5e-57	68.29	F-box protein SKIP19-like OS=Momordica charantia OX=3673 GN=LOC111015784 PE=4 SV...	[more]
A0A6A1WBR6	2.1e-54	66.88	F-box protein SKIP19 OS=Morella rubra OX=262757 GN=CJ030_MR2G022161 PE=4 SV=1	[more]
A0A6J1CYW9	1.0e-53	65.27	putative F-box/LRR-repeat protein 23 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A5B6ZSQ6	3.1e-53	64.38	Putative F-box protein SKIP19-like (Fragment) OS=Davidia involucrata OX=16924 GN...	[more]

BLAST of Moc01g33610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G05460.1	1.3e-51	62.42	RNI-like superfamily protein	[more]
AT4G05497.1	5.7e-36	47.53	RNI-like superfamily protein	[more]
AT4G05490.1	8.5e-32	44.94	RNI-like superfamily protein	[more]
AT4G05475.1	1.1e-31	44.94	RNI-like superfamily protein	[more]
AT4G05470.1	4.4e-28	43.29	RNI-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 4..171 e-value: 2.3E-22 score: 81.4
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 11..55 e-value: 1.2E-6 score: 28.3
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 8..55 score: 10.318796
None	No IPR available	PANTHER	PTHR38926:SF20	F-BOX PROTEIN SKIP19-RELATED	coord: 6..170
None	No IPR available	PANTHER	PTHR38926	F-BOX DOMAIN CONTAINING PROTEIN, EXPRESSED	coord: 6..170
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 41..167
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 11..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc01g33610.1	Moc01g33610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding