Moc01g33230 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc01g33230
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	PHD finger transcription factor, putative
Location	chr1: 23357207 .. 23358163 (+)
RNA-Seq Expression	Moc01g33230
Synteny	Moc01g33230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGGCTGTCATTCGCTGTCCACCGTAACGGCCTCTGGCTATATTTTATTCCTCACTTGCGCTCTCTTCTTCTTCTTCTTCAGAGCCTTCCGTCAACATCAACTTTCGCGCCAGCGGCCTCTGCCCTTTTGAGTGGTTCGTTGCGACCTTGCAAACCCTAGATCGGACCAGGCGAAGAGAAAGCGCAGCGCAGAACTGGAAGACGGCTTCTCGTCTCGTTGATGAAAATGTAGAGGTAATACAACTCTGTTTCAGCCTTTTATTGTTCTGGGATTCGATTGGAACTTCAAGGGTCCGATCTGATGGTTTTCCGATTGTTTCTCCTTTGTTGGTTTTCCGCTCCAATGCCATTAATTTTTTCTTATTTCCCATCTTAATCAGCGCATTCTTCAGTGATTCCTTATCTATCTGTTTTATTTTCTCCTTTTCTTCTGTGTGTTTATTTCGGGGTTAACTGAGAACTTCTGAGGTCAATTAGGGTTATTTTTTTGCCTGTTAAATTTACATTGATGGCTTTTTGTTTTTCGTGGTTGTGAAAACGAATTAGGGGGTTTATTATCAAGCAGGCACTCTTCCTTTTCTTTTCGAATTTTATGAACATTATGAATGTGAAACATGGCAGGTGGGGAGTTTGGAAGACACGGCTTTCTTGGCTCTTGGCATAGGGGCACTGGTGGTATCGTGTGTAACAACGGAGTTCGTCACGTGTCATGTAATGTACGTTTCTGCAATTTTATTAGATGATGTTAATGTTAATTCCTCGATTGGTAATTATAATTTTATGGACTGTGTTTTGATGTGAATTACCAGGATGCATGGACGGAAGGTGTTATTTTTGGTTCACAACAGAGGAGGATGCAGAGGAGGATTTTCTTTCTGAATTTGGGTGATGAATTGGAGGTTGGATTGAGATGGATTGGCAGAGATGTGGGACCTGGTCGTTTATTGAGTTAA

mRNA sequence

ATGACAGGCTGTCATTCGCTCGGCCTCTGCCCTTTTGAGTGGTTCGTTGCGACCTTGCAAACCCTAGATCGGACCAGGCGAAGAGAAAGCGCAGCGCAGAACTGGAAGACGGCTTCTCGTCTCGTTGATGAAAATGTAGAGGTGGGGAGTTTGGAAGACACGGCTTTCTTGGCTCTTGGCATAGGGGCACTGGTGGATGCATGGACGGAAGGTGTTATTTTTGGTTCACAACAGAGGAGGATGCAGAGGAGGATTTTCTTTCTGAATTTGGGTGATGAATTGGAGGTTGGATTGAGATGGATTGGCAGAGATGTGGGACCTGGTCGTTTATTGAGTTAA

Coding sequence (CDS)

ATGACAGGCTGTCATTCGCTCGGCCTCTGCCCTTTTGAGTGGTTCGTTGCGACCTTGCAAACCCTAGATCGGACCAGGCGAAGAGAAAGCGCAGCGCAGAACTGGAAGACGGCTTCTCGTCTCGTTGATGAAAATGTAGAGGTGGGGAGTTTGGAAGACACGGCTTTCTTGGCTCTTGGCATAGGGGCACTGGTGGATGCATGGACGGAAGGTGTTATTTTTGGTTCACAACAGAGGAGGATGCAGAGGAGGATTTTCTTTCTGAATTTGGGTGATGAATTGGAGGTTGGATTGAGATGGATTGGCAGAGATGTGGGACCTGGTCGTTTATTGAGTTAA

Protein sequence

MTGCHSLGLCPFEWFVATLQTLDRTRRRESAAQNWKTASRLVDENVEVGSLEDTAFLALGIGALVDAWTEGVIFGSQQRRMQRRIFFLNLGDELEVGLRWIGRDVGPGRLLS

Homology

[Close]

BLAST of Moc01g33230 vs. NCBI nr
Match: XP_022144627.1 (uncharacterized protein LOC111014268 [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-06
Identity = 44/99 (44.44%), Postives = 48/99 (48.48%), Query Frame = 0


Query: 1  MTGCHSLG---------LCPFEWFVATLQTLDRTRR---------------------RES 60
          MTGCHSL            P    +  LQ+L  T                       +ES
Sbjct: 1  MTGCHSLSPPAWPGPIYSIPHSHSLLLLQSLPSTSAPAASALLMVRCDFANPRSFPVKES 60

Query: 61 AAQNWKTASRLVDENVEVGSLEDTAFLALGIGALVDAWT 70
          AAQNWK  SRLV E VEV SLEDTAFLALGIGAL+   T
Sbjct: 61 AAQNWKKPSRLVGEKVEVRSLEDTAFLALGIGALLSCVT 99

[Close]

BLAST of Moc01g33230 vs. ExPASy TrEMBL
Match: A0A6J1CU72 (uncharacterized protein LOC111014268 OS=Momordica charantia OX=3673 GN=LOC111014268 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 8.2e-07
Identity = 44/99 (44.44%), Postives = 48/99 (48.48%), Query Frame = 0


Query: 1  MTGCHSLG---------LCPFEWFVATLQTLDRTRR---------------------RES 60
          MTGCHSL            P    +  LQ+L  T                       +ES
Sbjct: 1  MTGCHSLSPPAWPGPIYSIPHSHSLLLLQSLPSTSAPAASALLMVRCDFANPRSFPVKES 60

Query: 61 AAQNWKTASRLVDENVEVGSLEDTAFLALGIGALVDAWT 70
          AAQNWK  SRLV E VEV SLEDTAFLALGIGAL+   T
Sbjct: 61 AAQNWKKPSRLVGEKVEVRSLEDTAFLALGIGALLSCVT 99

[Close]

BLAST of Moc01g33230 vs. TAIR 10
Match: AT5G58610.1 (PHD finger transcription factor, putative )

HSP 1 Score: 42.7 bits (99), Expect = 2.2e-04
Identity = 23/52 (44.23%), Postives = 30/52 (57.69%), Query Frame = 0


Query: 53  DTAFLALGIGALV-----DAWTEGVIFGSQQRRMQRRIFFLNLGDELEVGLR 100
           D A L L  G  V     DAW EGV+F  +    +RR+FF +LGDEL+  L+
Sbjct: 101 DVAKLNLAYGLCVDVFFSDAWWEGVLFDHENGSEKRRVFFPDLGDELDADLQ 152

The following BLAST results are available for this feature:

BLAST of Moc01g33230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144627.1	1.7e-06	44.44	uncharacterized protein LOC111014268 [Momordica charantia]	[more]

BLAST of Moc01g33230 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc01g33230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CU72	8.2e-07	44.44	uncharacterized protein LOC111014268 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]

BLAST of Moc01g33230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58610.1	2.2e-04	44.23	PHD finger transcription factor, putative	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc01g33230.1	Moc01g33230.1	mRNA