Moc01g32650 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc01g32650
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionNip1a
Locationchr1: 22965188 .. 22965652 (-)
RNA-Seq ExpressionMoc01g32650
SyntenyMoc01g32650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATGACAAGAGGCTGGTTTACCTCCTTCCATGGAAATCTCTTGGTAATGGCAAAGGCTATGGTGACAGAGGGGTTAAAATGGGCACCAGAGATGTGGCCAACGGAATACACCATCACCATTACAACTAAACCCCAAGCAATAGAAATCCCTGGGAAGGTGATAATTCCATCTGTGCTCAAATTCACCACTACTGATGCTTCCCCTGCAAATATCAAGAAATATGTCCCCACCACCTCTGCAATCAACTATTTCCACACCAAAGCAAAAATATCAGCCATTAACGAAAACTTGGAAATGGGTTTTCCACCATCTGGATTATATGACTTGATTTCAAGATTTTCAGACTTAACAGAGAGAGAGAGAGATGAGAGAGACCTTCTGAATGAAAGGAACAGAGACACAGTCAGCTGCGGGATCATCTTTCACATTCAAAGAAACACTGTGGTGTCCATTGCTTGA

mRNA sequence

ATGGAAATGACAAGAGGCTGGTTTACCTCCTTCCATGGAAATCTCTTGGTAATGGCAAAGGCTATGGTGACAGAGGGGTTAAAATGGGCACCAGAGATGTGGCCAACGGAATACACCATCACCATTACAACTAAACCCCAAGCAATAGAAATCCCTGGGAAGGTGATAATTCCATCTGTGCTCAAATTCACCACTACTGATGCTTCCCCTGCAAATATCAAGAAATATGTCCCCACCACCTCTGCAATCAACTATTTCCACACCAAAGCAAAAATATCAGCCATTAACGAAAACTTGGAAATGGGTTTTCCACCATCTGGATTATATGACTTGATTTCAAGATTTTCAGACTTAACAGAGAGAGAGAGAGATGAGAGAGACCTTCTGAATGAAAGGAACAGAGACACAGTCAGCTGCGGGATCATCTTTCACATTCAAAGAAACACTGTGGTGTCCATTGCTTGA

Coding sequence (CDS)

ATGGAAATGACAAGAGGCTGGTTTACCTCCTTCCATGGAAATCTCTTGGTAATGGCAAAGGCTATGGTGACAGAGGGGTTAAAATGGGCACCAGAGATGTGGCCAACGGAATACACCATCACCATTACAACTAAACCCCAAGCAATAGAAATCCCTGGGAAGGTGATAATTCCATCTGTGCTCAAATTCACCACTACTGATGCTTCCCCTGCAAATATCAAGAAATATGTCCCCACCACCTCTGCAATCAACTATTTCCACACCAAAGCAAAAATATCAGCCATTAACGAAAACTTGGAAATGGGTTTTCCACCATCTGGATTATATGACTTGATTTCAAGATTTTCAGACTTAACAGAGAGAGAGAGAGATGAGAGAGACCTTCTGAATGAAAGGAACAGAGACACAGTCAGCTGCGGGATCATCTTTCACATTCAAAGAAACACTGTGGTGTCCATTGCTTGA

Protein sequence

MEMTRGWFTSFHGNLLVMAKAMVTEGLKWAPEMWPTEYTITITTKPQAIEIPGKVIIPSVLKFTTTDASPANIKKYVPTTSAINYFHTKAKISAINENLEMGFPPSGLYDLISRFSDLTERERDERDLLNERNRDTVSCGIIFHIQRNTVVSIA
Homology
[Close]
BLAST of Moc01g32650 vs. ExPASy TrEMBL
Match: A0A0A9B2E7 (Nip1a OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.6e-07
Identity = 32/64 (50.00%), Postives = 37/64 (57.81%), Query Frame = 0 

Query: 12  HGNLLVMAKAMVTEGLKWAPEMWPTEYTITITTKPQAIEIPGKVIIPSVLKFTTTDASPA 71
           HG    +A A VT GLK APEMWPT YTIT+T  P  +  PG VI P  L    T   PA
Sbjct: 51  HGKRPQVANAKVTAGLKCAPEMWPTAYTITMTASPHTMATPGNVICPFWLALIVTAPHPA 110

Query: 72  NIKK 76
            ++K
Sbjct: 111 KMRK 114

[Close]
BLAST of Moc01g32650 vs. ExPASy TrEMBL
Match: A0A0A9RIR5 (Nip1a OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.6e-07
Identity = 32/64 (50.00%), Postives = 37/64 (57.81%), Query Frame = 0 

Query: 12  HGNLLVMAKAMVTEGLKWAPEMWPTEYTITITTKPQAIEIPGKVIIPSVLKFTTTDASPA 71
           HG    +A A VT GLK APEMWPT YTIT+T  P  +  PG VI P  L    T   PA
Sbjct: 51  HGKRPQVANAKVTAGLKCAPEMWPTAYTITMTASPHTMATPGNVICPFWLALIVTAPHPA 110

Query: 72  NIKK 76
            ++K
Sbjct: 111 KMRK 114

[Close]
BLAST of Moc01g32650 vs. ExPASy TrEMBL
Match: A0A0A9RUT2 (Nip1a OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.6e-07
Identity = 32/64 (50.00%), Postives = 37/64 (57.81%), Query Frame = 0 

Query: 12  HGNLLVMAKAMVTEGLKWAPEMWPTEYTITITTKPQAIEIPGKVIIPSVLKFTTTDASPA 71
           HG    +A A VT GLK APEMWPT YTIT+T  P  +  PG VI P  L    T   PA
Sbjct: 51  HGKRPQVANAKVTAGLKCAPEMWPTAYTITMTASPHTMATPGNVICPFWLALIVTAPHPA 110

Query: 72  NIKK 76
            ++K
Sbjct: 111 KMRK 114

[Close]
BLAST of Moc01g32650 vs. ExPASy TrEMBL
Match: J3N426 (Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 5.2e-04
Identity = 32/89 (35.96%), Postives = 42/89 (47.19%), Query Frame = 0 

Query: 9   TSFHGNLLVMAKAMVTEGLKWAPEMWPTEYTITITTKPQAIEIPGKVIIPSVLKFTTTDA 68
           T  HG     AKAMV++GL+ APEMWP +  + IT  P     P   I P    FT   A
Sbjct: 97  TCSHGKWRSTAKAMVSDGLRCAPEMWPVDRMMIITASPAHAAFPNGEIAPPYFWFTIGAA 156

Query: 69  SPANIKKYVPTTSAINYFHTKAKISAINE 98
               ++  VPT SA +       +  IN+
Sbjct: 157 VAKKMRMNVPTNSAPSCIQNFVFVYLINK 185

[Close]
BLAST of Moc01g32650 vs. ExPASy TrEMBL
Match: A0A0D3HFK5 (Uncharacterized protein OS=Oryza barthii OX=65489 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 8.9e-04
Identity = 29/74 (39.19%), Postives = 37/74 (50.00%), Query Frame = 0 

Query: 9   TSFHGNLLVMAKAMVTEGLKWAPEMWPTEYTITITTKPQAIEIPGKVIIPSVLKFTTTDA 68
           T  HG     AKAMV++GL+WAPEM P +  + +T  P     P   I P    FT   A
Sbjct: 74  TCSHGKWRSAAKAMVSDGLRWAPEMCPVDRMMVVTASPAHAAFPNGEIAPPYFWFTIGAA 133

Query: 69  SPANIKKYVPTTSA 83
               ++  VPT SA
Sbjct: 134 VAKKMRMNVPTNSA 147

The following BLAST results are available for this feature:
BLAST of Moc01g32650 vs.
Match NameE-valueIdentityDescription
BLAST of Moc01g32650 vs.
Match NameE-valueIdentityDescription
BLAST of Moc01g32650 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A9B2E76.6e-0750.00Nip1a OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A0A9RIR56.6e-0750.00Nip1a OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A0A9RUT26.6e-0750.00Nip1a OS=Arundo donax OX=35708 PE=4 SV=1[more]
J3N4265.2e-0435.96Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1[more]
A0A0D3HFK58.9e-0439.19Uncharacterized protein OS=Oryza barthii OX=65489 PE=4 SV=1[more]
BLAST of Moc01g32650 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc01g32650.1Moc01g32650.1mRNA