Moc01g29420 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc01g29420
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	F-box protein At3g07870-like
Location	chr1: 20867911 .. 20868780 (+)
RNA-Seq Expression	Moc01g29420
Synteny	Moc01g29420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTCTTTGGATTCGTGTCGTCGGTTTTCTTGGATTCAATTAGTCGGCATCCGCGGCAACCGTTTGAAGAAGAGGAAAAGCGAGACGAGGAATTGGAAGAGGAAAATCAAGACGAGGAAGATATTGGAGGAGCTTTTTCCACTTACAGTTCCCCTTCCGGTTCCATCTGATGCGAATAAGATAAATTGGGATGAGCTTTCACTTCCTCCACTTCCGCCTGATGTGATTCAGCTAATATTCTCCAAACTTCCCTTCTTCAATTTGCCCGGTTGCCGGCTCGTGTGTAAAGCATGGAACAATTTTATTTTAACTTGTAAGTTACATTCTTCGATCTCAACTTCAAACCTCTTTTATGCCCATATTTCTCCGTTTAACAAGCTCTGTTGTGTGGATTTGGATCCTAAACATTTGGGAGTGGTCAGCAGCCTTGGCTCATTTAGCTTCCATCCTGATTTGTTTTCCACTCATTTTATCTCGATCATCAATTCCTGCAATGGACTCCTCTGTTGTTCTTTTAAGCCTAAACGGACATGGGGATCTAGACCTGTTATTTGTATATTAAATCCCATGACAAATGAGTACCTCATCATTCCCATCTCCGGTAGGGATATAGATTATCGTTACGGATTAGGATTTAGTCCTAAAACAAAGCAGTACAAATTAGTTAGAAATTCCGAAGTGCCTGATAAATCCAATTCCAAATTCTCTACTTTGGTAGAGATTCTTGCATTTGGCACAAGTTCAAGTCCCGAATGGTCCCTGTTGGCTTTGTGCCTTTTGAAGTTGATGATCATTGCGGTTACTTCAATGGAGGCCTCTATTGGGTTGCAGATGATGGAACGAATGGCATGTACCGTTTGGATATAG

mRNA sequence

ATGGTTTCTTTGGATTCGTGTCGTCGGTTTTCTTGGATTCAATTAGTCGGCATCCGCGGCAACCGTTTGAAGAAGAGGAAAAGCGAGACGAGGAATTGGAAGAGGAAAATCAAGACGAGGAAGATATTGGAGGAGCTTTTTCCACTTACAGTTCCCCTTCCGGTTCCATCTGATGCGAATAAGATAAATTGGGATGAGCTTTCACTTCCTCCACTTCCGCCTGATGTGATTCAGCTAATATTCTCCAAACTTCCCTTCTTCAATTTGCCCGGTTGCCGGCTCGTGTGTAAAGCATGGAACAATTTTATTTTAACTTGTAAGTTACATTCTTCGATCTCAACTTCAAACCTCTTTTATGCCCATATTTCTCCGTTTAACAAGCTCTGTTGTGTGGATTTGGATCCTAAACATTTGGGAGTGGTCAGCAGCCTTGGCTCATTTAGCTTCCATCCTGATTTGTTTTCCACTCATTTTATCTCGATCATCAATTCCTGCAATGGACTCCTCTGTTGTTCTTTTAAGCCTAAACGGACATGGGGATCTAGACCTGTTATTTGTATATTAAATCCCATGACAAATGAGTACCTCATCATTCCCATCTCCGGTAGGGATATAGATTATCGTTACGGATTAGGATTTAGTCCTAAAACAAAGCAGTACAAATTAGTTAGAAATTCCGAAGTGCCTGATAAATCCAATTCCAAATTCTCTACTTTGGTAGAGATTCTTGCATTTGGCACAAGTTCAAGTCCCGAATGGTCCCTGTTGGCTTTGTGCCTTTTGAAGTTGATGATCATTGCGGTTACTTCAATGGAGGCCTCTATTGGGTTGCAGATGATGGAACGAATGGCATGTACCGTTTGGATATAG

Coding sequence (CDS)

ATGGTTTCTTTGGATTCGTGTCGTCGGTTTTCTTGGATTCAATTAGTCGGCATCCGCGGCAACCGTTTGAAGAAGAGGAAAAGCGAGACGAGGAATTGGAAGAGGAAAATCAAGACGAGGAAGATATTGGAGGAGCTTTTTCCACTTACAGTTCCCCTTCCGGTTCCATCTGATGCGAATAAGATAAATTGGGATGAGCTTTCACTTCCTCCACTTCCGCCTGATGTGATTCAGCTAATATTCTCCAAACTTCCCTTCTTCAATTTGCCCGGTTGCCGGCTCGTGTGTAAAGCATGGAACAATTTTATTTTAACTTGTAAGTTACATTCTTCGATCTCAACTTCAAACCTCTTTTATGCCCATATTTCTCCGTTTAACAAGCTCTGTTGTGTGGATTTGGATCCTAAACATTTGGGAGTGGTCAGCAGCCTTGGCTCATTTAGCTTCCATCCTGATTTGTTTTCCACTCATTTTATCTCGATCATCAATTCCTGCAATGGACTCCTCTGTTGTTCTTTTAAGCCTAAACGGACATGGGGATCTAGACCTGTTATTTGTATATTAAATCCCATGACAAATGAGTACCTCATCATTCCCATCTCCGGTAGGGATATAGATTATCGTTACGGATTAGGATTTAGTCCTAAAACAAAGCAGTACAAATTAGTTAGAAATTCCGAAGTGCCTGATAAATCCAATTCCAAATTCTCTACTTTGGTAGAGATTCTTGCATTTGGCACAAGTTCAAGTCCCGAATGGTCCCTGTTGGCTTTGTGCCTTTTGAAGTTGATGATCATTGCGGTTACTTCAATGGAGGCCTCTATTGGGTTGCAGATGATGGAACGAATGGCATGTACCGTTTGGATATAG

Protein sequence

MVSLDSCRRFSWIQLVGIRGNRLKKRKSETRNWKRKIKTRKILEELFPLTVPLPVPSDANKINWDELSLPPLPPDVIQLIFSKLPFFNLPGCRLVCKAWNNFILTCKLHSSISTSNLFYAHISPFNKLCCVDLDPKHLGVVSSLGSFSFHPDLFSTHFISIINSCNGLLCCSFKPKRTWGSRPVICILNPMTNEYLIIPISGRDIDYRYGLGFSPKTKQYKLVRNSEVPDKSNSKFSTLVEILAFGTSSSPEWSLLALCLLKLMIIAVTSMEASIGLQMMERMACTVWI

Homology

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BLAST of Moc01g29420 vs. NCBI nr
Match: XP_022132431.1 (F-box protein At3g07870-like [Momordica charantia])

HSP 1 Score: 592.0 bits (1525), Expect = 2.7e-165
Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 0


Query: 1   MVSLDSCRRFSWIQLVGIRGNRLKKRKSETRNWKRKIKTRKILEELFPLTVPLPVPSDAN 60
           MVSLDSCRRFSWIQLVGIRGNRLKKRKSETRNWKRKIKTRKILEELFPLTVPLPVPSDAN
Sbjct: 1   MVSLDSCRRFSWIQLVGIRGNRLKKRKSETRNWKRKIKTRKILEELFPLTVPLPVPSDAN 60

Query: 61  KINWDELSLPPLPPDVIQLIFSKLPFFNLPGCRLVCKAWNNFILTCKLHSSISTSNLFYA 120
           KINWDELSLPPLPPDVIQLIFSKLPFFNLPGCRLVCKAWNNFILTCKLHSSISTSNLFYA
Sbjct: 61  KINWDELSLPPLPPDVIQLIFSKLPFFNLPGCRLVCKAWNNFILTCKLHSSISTSNLFYA 120

Query: 121 HISPFNKLCCVDLDPKHLGVVSSLGSFSFHPDLFSTHFISIINSCNGLLCCSFKPKRTWG 180
           HISPFNKLCCVDLDPKHLGVVSSLGSFSFHPDLFSTHFISIINSCNGLLCCSFKPKRTWG
Sbjct: 121 HISPFNKLCCVDLDPKHLGVVSSLGSFSFHPDLFSTHFISIINSCNGLLCCSFKPKRTWG 180

Query: 181 SRPVICILNPMTNEYLIIPISGRDIDYRYGLGFSPKTKQYKLVRNSEVPDKSNSKFSTLV 240
           SRPVICILNPMTNEYLIIPISGRDIDYRYGLGFSPKTKQYKLVRNSEVPDKSNSKFSTLV
Sbjct: 181 SRPVICILNPMTNEYLIIPISGRDIDYRYGLGFSPKTKQYKLVRNSEVPDKSNSKFSTLV 240

Query: 241 EILAFGTSSSPEWSLLALCLLKLMIIAVTSMEASIGLQMMERMACTVWI 290
           EILAFGTSSSPEWSLLALCLLKLMIIAVTSMEASIGLQMMERMACTVWI
Sbjct: 241 EILAFGTSSSPEWSLLALCLLKLMIIAVTSMEASIGLQMMERMACTVWI 289

[Close]

BLAST of Moc01g29420 vs. NCBI nr
Match: XP_038880514.1 (putative F-box protein At1g46984 [Benincasa hispida])

HSP 1 Score: 188.0 bits (476), Expect = 1.2e-43
Identity = 104/191 (54.45%), Postives = 128/191 (67.02%), Query Frame = 0


Query: 72  LPPDVIQLIFSKLPFFNLPGCRLVCKAWNNFILTCKLHSSISTSNLFYAHISPF--NKLC 131
           LPPD++QLIFSKLPFFNLP CRLV   WNN +L+CK   SIS SNLF+AH        L 
Sbjct: 16  LPPDILQLIFSKLPFFNLPTCRLVSATWNNLVLSCKFDPSISISNLFFAHFYSCRDRNLH 75

Query: 132 CVDLDPKHLGVVSSLGSFSFHPDLFS-THFISIINSCNGLLCCSFKPKRTWGSRP-VICI 191
           CVDLDP+HL  +S++ SF+FHP++ S +  ISIINSC+GL+      +R  G RP V+C+
Sbjct: 76  CVDLDPQHLEGMSTVASFTFHPNVSSGSCKISIINSCSGLISLLITKRRRRGHRPGVVCV 135

Query: 192 LNPMTNEYLIIPI---SGRDI-DYRYGLGFSPKTKQYKLVRNSEVPDKSNSKFSTLVEIL 251
           LNPMTNEY  +P     G  + DY YGLGFSP+TKQYKL R   V  +       +VEI 
Sbjct: 136 LNPMTNEYFKLPTFRSKGDSVKDYFYGLGFSPRTKQYKLARTHYVCHE------FIVEIF 195

Query: 252 AFGTSSSPEWS 255
           AFGTS   EW+
Sbjct: 196 AFGTSC--EWT 198

[Close]

BLAST of Moc01g29420 vs. NCBI nr
Match: XP_022143297.1 (F-box/kelch-repeat protein At3g06240-like [Momordica charantia])

HSP 1 Score: 174.5 bits (441), Expect = 1.3e-39
Identity = 101/187 (54.01%), Postives = 123/187 (65.78%), Query Frame = 0


Query: 72  LPPDVIQLIFSKLPFFNLPGCRLVCKAWNNFILTCKLHSSISTSN-LFYAHISPFN-KLC 131
           +P ++I LIFSKLPF NLP CRLVCKAW++ +LT KLH SIS SN LF AH   F+  L 
Sbjct: 17  IPAELIWLIFSKLPFVNLPSCRLVCKAWSDVVLTGKLHPSISISNHLFLAHDYLFDPNLQ 76

Query: 132 CVDLDPKHLGVVSSLGSFSFHPD-LFSTHFISIINSCNGLLCCSFKPKRTWGSRPV---- 191
           C+ LDPK+LG + ++  F FHPD + S+ +ISI+N CNGLLCC F+  RT    P     
Sbjct: 77  CLHLDPKYLGGMCNVAKFRFHPDFVLSSTYISIVNFCNGLLCCKFE-HRTTKMPPYENVE 136

Query: 192 ICILNPMTNEYLIIPISGRDID---YRYGLGFSPKTKQYKLVRNSEVPDKSNSKFSTLVE 249
           +CILNPMTNEY   PIS    D   Y Y  GFSPKTKQYKLVR     DK+    + L+E
Sbjct: 137 VCILNPMTNEYFKPPISNASKDRWYYCYRFGFSPKTKQYKLVRFFYSCDKA----AILLE 196

[Close]

BLAST of Moc01g29420 vs. NCBI nr
Match: XP_004135796.1 (putative F-box protein At1g46984 [Cucumis sativus] >KGN66126.1 hypothetical protein Csa_007182 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 8.7e-39
Identity = 97/191 (50.79%), Postives = 123/191 (64.40%), Query Frame = 0


Query: 72  LPPDVIQLIFSKLPFFNLPGCRLVCKAWNNFILTCKLHSSISTSNLFYA--HISPFNKLC 131
           LPPDV+QLIFSKLPFFNLP CRLV   WNN I +CK   SIS S+LF+A  + S    L 
Sbjct: 16  LPPDVLQLIFSKLPFFNLPTCRLVSTTWNNLISSCKFDPSISISHLFFARFYSSRHPNLH 75

Query: 132 CVDLDPKHLGVVSSLGSFSFHPDLFS-THFISIINSCNGLLCCSFKPKRTWGSR-PVICI 191
           CV+ DP+H   +S++ SF+FHPDL S +  I+IINSC+GL+      +R  G R  ++C+
Sbjct: 76  CVEFDPQHAEGMSTVASFAFHPDLSSGSCRITIINSCSGLISLIINKRRRRGHRLDLVCV 135

Query: 192 LNPMTNEYLIIPIS----GRDIDYRYGLGFSPKTKQYKLVRNSEVPDKSNSKFSTLVEIL 251
           LNP+TNEY  +P S     R  +Y YGLGFSP T QYKL R     D+       +V+I 
Sbjct: 136 LNPITNEYFKLPTSRSKGDRVPNYCYGLGFSPTTNQYKLARTHFTHDE------FIVDIF 195

Query: 252 AFGTSSSPEWS 255
           AFGTS   EW+
Sbjct: 196 AFGTSC--EWT 198

[Close]

BLAST of Moc01g29420 vs. NCBI nr
Match: XP_038883771.1 (putative F-box protein At1g60370 [Benincasa hispida])

HSP 1 Score: 171.0 bits (432), Expect = 1.5e-38
Identity = 102/194 (52.58%), Postives = 123/194 (63.40%), Query Frame = 0


Query: 72  LPPD-VIQLIFSKLPFFNLPGCRLVCKAWNNFILTCKLHSSISTSNLFYAHISPFNKLCC 131
           LPPD +IQ+I SK+P FNLP CRLVCKAWNN +LTCK    +  S+L  A+  P   L C
Sbjct: 17  LPPDNIIQVILSKVPLFNLPSCRLVCKAWNNLVLTCKFDPPLLISSLSLAYDCPSRNLYC 76

Query: 132 VDLDPKHLGVVSSLGSFSFHPDLFSTHFISIINSCNGLLCCSFKPKRTWGS--RPVICIL 191
           +D + K+L  +SS+ SF+FHP  F T  ISIINSCNGLL      KR  GS    V+CIL
Sbjct: 77  MDFNLKYLEGMSSVVSFTFHPKFF-TSSISIINSCNGLLSLLIS-KRKSGSPISYVLCIL 136

Query: 192 NPMTNEYLIIPIS--------GRDIDYRYGLGFSPKTKQYKLVRNSEVPDKSNSKFSTLV 251
           NPMTNEY   P          GR   Y YGLGFSP+TKQYK+ R S + D+S    +T V
Sbjct: 137 NPMTNEYFKFPAEKSKTHCCCGR--PYSYGLGFSPETKQYKIARTSFLRDES----TTSV 196

Query: 252 EILAFGTSSSPEWS 255
           EI AFGT+   EW+
Sbjct: 197 EIFAFGTTR--EWT 200

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BLAST of Moc01g29420 vs. ExPASy Swiss-Prot
Match: Q9SFC7 (F-box protein At3g07870 OS=Arabidopsis thaliana OX=3702 GN=At3g07870 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.7e-06
Identity = 45/164 (27.44%), Postives = 71/164 (43.29%), Query Frame = 0


Query: 69  LPPLPPDVIQLIFSKLPFFNLPGCRLVCKAWNNFILTCKLHSSISTSN-----LFYAHIS 128
           L  LP D+I  IFS+LP  ++     VC++W + +      SS S+S      L +    
Sbjct: 25  LESLPEDIIADIFSRLPISSIARLMFVCRSWRSVLTQHGRLSSSSSSPTKPCLLLHCDSP 84

Query: 129 PFNKLCCVDLDPKHLGVVSSLGSFSFHPDLFSTHFISIINSCNGLLCCSFKPKRTWGSRP 188
             N L  +DL  +   + +   +  F     S     ++ SCNGLLC S           
Sbjct: 85  IRNGLHFLDLSEEEKRIKTKKFTLRF---ASSMPEFDVVGSCNGLLCLSDSL-----YND 144

Query: 189 VICILNPMTNEYLIIPISG---RDIDYRYGLGFSPKTKQYKLVR 225
            + + NP T   L +P       D +  +G GF   TK+YK+++
Sbjct: 145 SLYLYNPFTTNSLELPECSNKYHDQELVFGFGFHEMTKEYKVLK 180

[Close]

BLAST of Moc01g29420 vs. ExPASy Swiss-Prot
Match: Q9SLH9 (F-box protein At1g54550 OS=Arabidopsis thaliana OX=3702 GN=At1g54550 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.5e-04
Identity = 38/158 (24.05%), Postives = 68/158 (43.04%), Query Frame = 0


Query: 72  LPPDVIQLIFSKLPFFNLPGCRLVCKAWNNFILTCKLHSSISTSNLFYAHISPFNKLCCV 131
           LP D+++ IFS++P  +L   R  CK WN       L    +  N F   +   +++C +
Sbjct: 7   LPDDLVREIFSRVPLTSLRAVRSTCKKWNAISKYDILGKKAAAKNQFLEFMVTDSRVCSL 66

Query: 132 DLDPKHLGVVSSLGSFSFH----PDLFSTHFISIINSCNGLLCCSFKPKRTWGSRPVICI 191
            LD + +     L   S      P+      IS +  C+GLL C  K   +      + +
Sbjct: 67  RLDLQGIRSEEDLIDLSIKQISIPNKVDQVEISQVYHCDGLLLCIAKDNSS------VMV 126

Query: 192 LNPMTNEYLIIPISGRDIDY-RYGLGFSPKTKQYKLVR 225
            NP   +  +I    +   Y ++ LG+    + +K++R
Sbjct: 127 WNPYLGQTKLIQPRKKLHRYDKFALGYD-NNRNHKILR 157

[Close]

BLAST of Moc01g29420 vs. ExPASy TrEMBL
Match: A0A6J1BS93 (F-box protein At3g07870-like OS=Momordica charantia OX=3673 GN=LOC111005288 PE=4 SV=1)

HSP 1 Score: 592.0 bits (1525), Expect = 1.3e-165
Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 0


Query: 1   MVSLDSCRRFSWIQLVGIRGNRLKKRKSETRNWKRKIKTRKILEELFPLTVPLPVPSDAN 60
           MVSLDSCRRFSWIQLVGIRGNRLKKRKSETRNWKRKIKTRKILEELFPLTVPLPVPSDAN
Sbjct: 1   MVSLDSCRRFSWIQLVGIRGNRLKKRKSETRNWKRKIKTRKILEELFPLTVPLPVPSDAN 60

Query: 61  KINWDELSLPPLPPDVIQLIFSKLPFFNLPGCRLVCKAWNNFILTCKLHSSISTSNLFYA 120
           KINWDELSLPPLPPDVIQLIFSKLPFFNLPGCRLVCKAWNNFILTCKLHSSISTSNLFYA
Sbjct: 61  KINWDELSLPPLPPDVIQLIFSKLPFFNLPGCRLVCKAWNNFILTCKLHSSISTSNLFYA 120

Query: 121 HISPFNKLCCVDLDPKHLGVVSSLGSFSFHPDLFSTHFISIINSCNGLLCCSFKPKRTWG 180
           HISPFNKLCCVDLDPKHLGVVSSLGSFSFHPDLFSTHFISIINSCNGLLCCSFKPKRTWG
Sbjct: 121 HISPFNKLCCVDLDPKHLGVVSSLGSFSFHPDLFSTHFISIINSCNGLLCCSFKPKRTWG 180

Query: 181 SRPVICILNPMTNEYLIIPISGRDIDYRYGLGFSPKTKQYKLVRNSEVPDKSNSKFSTLV 240
           SRPVICILNPMTNEYLIIPISGRDIDYRYGLGFSPKTKQYKLVRNSEVPDKSNSKFSTLV
Sbjct: 181 SRPVICILNPMTNEYLIIPISGRDIDYRYGLGFSPKTKQYKLVRNSEVPDKSNSKFSTLV 240

Query: 241 EILAFGTSSSPEWSLLALCLLKLMIIAVTSMEASIGLQMMERMACTVWI 290
           EILAFGTSSSPEWSLLALCLLKLMIIAVTSMEASIGLQMMERMACTVWI
Sbjct: 241 EILAFGTSSSPEWSLLALCLLKLMIIAVTSMEASIGLQMMERMACTVWI 289

[Close]

BLAST of Moc01g29420 vs. ExPASy TrEMBL
Match: A0A6J1CQE2 (F-box/kelch-repeat protein At3g06240-like OS=Momordica charantia OX=3673 GN=LOC111013202 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 6.5e-40
Identity = 101/187 (54.01%), Postives = 123/187 (65.78%), Query Frame = 0


Query: 72  LPPDVIQLIFSKLPFFNLPGCRLVCKAWNNFILTCKLHSSISTSN-LFYAHISPFN-KLC 131
           +P ++I LIFSKLPF NLP CRLVCKAW++ +LT KLH SIS SN LF AH   F+  L 
Sbjct: 17  IPAELIWLIFSKLPFVNLPSCRLVCKAWSDVVLTGKLHPSISISNHLFLAHDYLFDPNLQ 76

Query: 132 CVDLDPKHLGVVSSLGSFSFHPD-LFSTHFISIINSCNGLLCCSFKPKRTWGSRPV---- 191
           C+ LDPK+LG + ++  F FHPD + S+ +ISI+N CNGLLCC F+  RT    P     
Sbjct: 77  CLHLDPKYLGGMCNVAKFRFHPDFVLSSTYISIVNFCNGLLCCKFE-HRTTKMPPYENVE 136

Query: 192 ICILNPMTNEYLIIPISGRDID---YRYGLGFSPKTKQYKLVRNSEVPDKSNSKFSTLVE 249
           +CILNPMTNEY   PIS    D   Y Y  GFSPKTKQYKLVR     DK+    + L+E
Sbjct: 137 VCILNPMTNEYFKPPISNASKDRWYYCYRFGFSPKTKQYKLVRFFYSCDKA----AILLE 196

[Close]

BLAST of Moc01g29420 vs. ExPASy TrEMBL
Match: A0A0A0M1M5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G572960 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 4.2e-39
Identity = 97/191 (50.79%), Postives = 123/191 (64.40%), Query Frame = 0


Query: 72  LPPDVIQLIFSKLPFFNLPGCRLVCKAWNNFILTCKLHSSISTSNLFYA--HISPFNKLC 131
           LPPDV+QLIFSKLPFFNLP CRLV   WNN I +CK   SIS S+LF+A  + S    L 
Sbjct: 16  LPPDVLQLIFSKLPFFNLPTCRLVSTTWNNLISSCKFDPSISISHLFFARFYSSRHPNLH 75

Query: 132 CVDLDPKHLGVVSSLGSFSFHPDLFS-THFISIINSCNGLLCCSFKPKRTWGSR-PVICI 191
           CV+ DP+H   +S++ SF+FHPDL S +  I+IINSC+GL+      +R  G R  ++C+
Sbjct: 76  CVEFDPQHAEGMSTVASFAFHPDLSSGSCRITIINSCSGLISLIINKRRRRGHRLDLVCV 135

Query: 192 LNPMTNEYLIIPIS----GRDIDYRYGLGFSPKTKQYKLVRNSEVPDKSNSKFSTLVEIL 251
           LNP+TNEY  +P S     R  +Y YGLGFSP T QYKL R     D+       +V+I 
Sbjct: 136 LNPITNEYFKLPTSRSKGDRVPNYCYGLGFSPTTNQYKLARTHFTHDE------FIVDIF 195

Query: 252 AFGTSSSPEWS 255
           AFGTS   EW+
Sbjct: 196 AFGTSC--EWT 198

[Close]

BLAST of Moc01g29420 vs. ExPASy TrEMBL
Match: A0A6J1DJA3 (F-box/LRR-repeat protein At2g43260-like OS=Momordica charantia OX=3673 GN=LOC111021424 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.3e-37
Identity = 97/182 (53.30%), Postives = 116/182 (63.74%), Query Frame = 0


Query: 74  PDVIQLIFSKLPFFNLPGCRLVCKAWNNFILTCKLHSSISTSNLFYAHISPFNKLCCVDL 133
           P++IQLIFSKL F NLP CRLVCKAWNN +LTC  H  IS+S+LF+ HISP +     +L
Sbjct: 16  PELIQLIFSKLSFVNLPSCRLVCKAWNNLVLTCNSHPPISSSSLFFIHISPQDS----NL 75

Query: 134 DPKHLGVVSSLGSFSFHPDLFSTHFISIINSCNGLLCCSFKPKRTWGSRPVICILNPMTN 193
               +G  SS+ SFSFH + F    ISII+SCNGLLCC    +RT        ILNPMTN
Sbjct: 76  QGIDMGGRSSVASFSFHSN-FPFASISIIDSCNGLLCCYLVHERTARPPREPFILNPMTN 135

Query: 194 EYLIIPISGRDI-DYRYGLGFSPKTKQYKLVRNSEVPDKSNSKFSTLVEILAFGTSSSPE 253
           EY   P S  D+  Y +G GFS KTKQYKL R S   +    K +TLVEI   GTS S +
Sbjct: 136 EYFKPPFSNADVWYYCFGFGFSLKTKQYKLTRLSFAWE----KHATLVEIFTLGTSRS-K 187

Query: 254 WS 255
           W+
Sbjct: 196 WN 187

[Close]

BLAST of Moc01g29420 vs. ExPASy TrEMBL
Match: A0A6J1HBS1 (F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462004 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.0e-36
Identity = 92/195 (47.18%), Postives = 114/195 (58.46%), Query Frame = 0


Query: 72  LPPDVIQLIFSKLPFFNLPGCRLVCKAWNNFILTCKLHSSIS-TSNLFYAHI-------S 131
           L PDVI+LI SKLP++ LP CRLVCK WNN IL+ K   SIS  SN  +AH+        
Sbjct: 15  LIPDVIELILSKLPYYYLPSCRLVCKTWNNVILSSKHDPSISAASNFLFAHVYSNNGDRP 74

Query: 132 PFNKLCCVDLDPKHLGVVSSLGSFSFHPDLFSTHFISIINSCNGLLC-CSFKPKRTWGSR 191
            F  L C++LDP H+  V S+ SF+     F   FIS INSCNGLL     K  + W S 
Sbjct: 75  SFRNLHCLELDPDHVEGVRSVASFNLRRKYFRRSFISTINSCNGLLAFVVTKNTKRWLSS 134

Query: 192 PVICILNPMTNEYLIIP---ISGRDIDYRYGLGFSPKTKQYKLVRNSEVPDKSNSKFSTL 251
             + ILNPMTNEY  +P     G  +   YG GF PKTK YK++RNS V D+++   +  
Sbjct: 135 NTVVILNPMTNEYFEVPKDEFKGNWLTCSYGFGFCPKTKHYKVIRNSTVDDRNSIVHNYK 194

Query: 252 VEILAFGTSSSPEWS 255
            EI AFGT    EW+
Sbjct: 195 SEIFAFGTRQ--EWT 207

[Close]

BLAST of Moc01g29420 vs. TAIR 10
Match: AT3G07870.1 (F-box and associated interaction domains-containing protein )

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-07
Identity = 45/164 (27.44%), Postives = 71/164 (43.29%), Query Frame = 0


Query: 69  LPPLPPDVIQLIFSKLPFFNLPGCRLVCKAWNNFILTCKLHSSISTSN-----LFYAHIS 128
           L  LP D+I  IFS+LP  ++     VC++W + +      SS S+S      L +    
Sbjct: 25  LESLPEDIIADIFSRLPISSIARLMFVCRSWRSVLTQHGRLSSSSSSPTKPCLLLHCDSP 84

Query: 129 PFNKLCCVDLDPKHLGVVSSLGSFSFHPDLFSTHFISIINSCNGLLCCSFKPKRTWGSRP 188
             N L  +DL  +   + +   +  F     S     ++ SCNGLLC S           
Sbjct: 85  IRNGLHFLDLSEEEKRIKTKKFTLRF---ASSMPEFDVVGSCNGLLCLSDSL-----YND 144

Query: 189 VICILNPMTNEYLIIPISG---RDIDYRYGLGFSPKTKQYKLVR 225
            + + NP T   L +P       D +  +G GF   TK+YK+++
Sbjct: 145 SLYLYNPFTTNSLELPECSNKYHDQELVFGFGFHEMTKEYKVLK 180

[Close]

BLAST of Moc01g29420 vs. TAIR 10
Match: AT1G54550.1 (F-box and associated interaction domains-containing protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.8e-05
Identity = 38/158 (24.05%), Postives = 68/158 (43.04%), Query Frame = 0


Query: 72  LPPDVIQLIFSKLPFFNLPGCRLVCKAWNNFILTCKLHSSISTSNLFYAHISPFNKLCCV 131
           LP D+++ IFS++P  +L   R  CK WN       L    +  N F   +   +++C +
Sbjct: 7   LPDDLVREIFSRVPLTSLRAVRSTCKKWNAISKYDILGKKAAAKNQFLEFMVTDSRVCSL 66

Query: 132 DLDPKHLGVVSSLGSFSFH----PDLFSTHFISIINSCNGLLCCSFKPKRTWGSRPVICI 191
            LD + +     L   S      P+      IS +  C+GLL C  K   +      + +
Sbjct: 67  RLDLQGIRSEEDLIDLSIKQISIPNKVDQVEISQVYHCDGLLLCIAKDNSS------VMV 126

Query: 192 LNPMTNEYLIIPISGRDIDY-RYGLGFSPKTKQYKLVR 225
            NP   +  +I    +   Y ++ LG+    + +K++R
Sbjct: 127 WNPYLGQTKLIQPRKKLHRYDKFALGYD-NNRNHKILR 157

[Close]

BLAST of Moc01g29420 vs. TAIR 10
Match: AT3G13680.1 (F-box and associated interaction domains-containing protein )

HSP 1 Score: 45.1 bits (105), Expect = 1.1e-04
Identity = 45/198 (22.73%), Postives = 85/198 (42.93%), Query Frame = 0


Query: 72  LPPDVIQLIFSKLPFFNLPGCRLVCKAWNNFILT--CKLHSSISTSNLFYAHISPFNKLC 131
           LP D+++ I S++P  +L   R  C+ WN+   +  C    + +  N F   +   +++C
Sbjct: 7   LPGDLVEEILSRVPLTSLRAIRSTCQKWNSLSKSQICG-RKATAAENKFLGFMMKDSRVC 66

Query: 132 CVDLDPKHLGVVSSLGSFSFHPDL-----FSTHFISIINSCNGLLCCSFKPKRTWGSRPV 191
            +  D +  G+ +  G     P +          +S +  C+GL+ C  K          
Sbjct: 67  SMKFDLQ--GIRNDDGEL-VEPSIKQVSKLDQIEVSQVFHCDGLVLCIIK------DNTG 126

Query: 192 ICILNPMTNE-YLIIPISGRDIDYRYGLGFSPKTKQYKLVRNSEVPDKSNSKFSTLVEIL 251
           + + NP   +   I P +   I+ RY LG+    + +K++R  ++   SN  F    E+ 
Sbjct: 127 LLVWNPYLGQTRWIHPRNNYQIEDRYALGYD-NNRNHKILRIFDLYPSSNRVFG--YEVY 186

Query: 252 AFGTSS------SPEWSL 256
            F ++S       PEW +
Sbjct: 187 DFSSNSWKVLDVIPEWDI 191

[Close]

BLAST of Moc01g29420 vs. TAIR 10
Match: AT5G41510.1 (F-box and associated interaction domains-containing protein )

HSP 1 Score: 44.7 bits (104), Expect = 1.5e-04
Identity = 56/214 (26.17%), Postives = 88/214 (41.12%), Query Frame = 0


Query: 72  LPPDVIQLIFSKLPFFNLPGCRLVCKAWNNFILTCKLHSSISTSNLFYAHISP-FNKLCC 131
           LP D+I+ IFS++P  ++   RL CK+WNN      L  S S + +     +    K   
Sbjct: 8   LPRDLIEEIFSRVPLTSMKAVRLTCKSWNN------LSKSESFTKVHIGRAATREEKTMI 67

Query: 132 VDLDPKHLGVVSSL-----------GSFSFHPDLFSTHFISIINSCNGLLCCSFK-PKRT 191
           VD+ P  L ++S +           G FS    L   + I+ +    GLL C  K P R 
Sbjct: 68  VDVMPHKLNLMSIVIDDVTPSAEFKGQFSL---LHKNYRINQVLHYEGLLLCIMKDPTR- 127

Query: 192 WGSRPVICILNPMTNEYLIIPI----SGRDID-YRYGLGFSPK--TKQYKLVRNSEVPDK 251
                 I + NP   +   I +        ID +RY LG++ K      K +R  +   K
Sbjct: 128 ------IVVWNPYLGQTRWIQLRYFHRPHGIDHFRYALGYADKESCSSLKFLRFLDYFYK 187

Query: 252 SNSKFSTLVEILAFGT------SSSPEWSLLALC 260
           +  +     EI  F +      + +P W + + C
Sbjct: 188 APEEEFFWYEIYDFDSGLWTTLNVTPHWGIYSTC 205

[Close]

BLAST of Moc01g29420 vs. TAIR 10
Match: AT3G57590.1 (F-box and associated interaction domains-containing protein )

HSP 1 Score: 42.7 bits (99), Expect = 5.7e-04
Identity = 55/187 (29.41%), Postives = 80/187 (42.78%), Query Frame = 0


Query: 69  LPPLPPDVIQLIFSKLPFFNLPGCRLVCKAWNNFILT-----CKLHSSISTSNLFYAHIS 128
           + P+P D+I  IFS+LP  ++ G R + K W + + +       L  S +   L +A   
Sbjct: 1   MEPIPNDLILEIFSRLPAKSVIGFRTLSKHWASMLRSPVFTELFLTRSSNRPRLLFAAER 60

Query: 129 PFNKLCCVDLDPKHLGVVSSLGSFSFHPDLFSTHFISIINSCNGLLCCSFKPKRTWGSR- 188
               L      P++    SS     +H          I +  +GLLC        W S+ 
Sbjct: 61  NGEWLFFSSPQPQNRYEKSS--HLDYHTKFSGDVSRFICSYVSGLLCF----PDLWLSKD 120

Query: 189 --PVICILNPMTNEYLIIPISGRDIDYRYGLGFSPKTKQYKLVRNSEVPDKSNSKFSTLV 248
             PVIC  NP T  Y  +P   R  + R  LGF P  KQ+K++  SE    S+ +     
Sbjct: 121 ASPVIC--NPTTGMYESLPDLMRYKNARGFLGFDPIGKQFKVL--SEAYPFSDQREHH-- 175

The following BLAST results are available for this feature:

BLAST of Moc01g29420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132431.1	2.7e-165	100.00	F-box protein At3g07870-like [Momordica charantia]	[more]
XP_038880514.1	1.2e-43	54.45	putative F-box protein At1g46984 [Benincasa hispida]	[more]
XP_022143297.1	1.3e-39	54.01	F-box/kelch-repeat protein At3g06240-like [Momordica charantia]	[more]
XP_004135796.1	8.7e-39	50.79	putative F-box protein At1g46984 [Cucumis sativus] >KGN66126.1 hypothetical prot...	[more]
XP_038883771.1	1.5e-38	52.58	putative F-box protein At1g60370 [Benincasa hispida]	[more]

BLAST of Moc01g29420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SFC7	2.7e-06	27.44	F-box protein At3g07870 OS=Arabidopsis thaliana OX=3702 GN=At3g07870 PE=2 SV=1	[more]
Q9SLH9	2.5e-04	24.05	F-box protein At1g54550 OS=Arabidopsis thaliana OX=3702 GN=At1g54550 PE=2 SV=1	[more]

BLAST of Moc01g29420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BS93	1.3e-165	100.00	F-box protein At3g07870-like OS=Momordica charantia OX=3673 GN=LOC111005288 PE=4...	[more]
A0A6J1CQE2	6.5e-40	54.01	F-box/kelch-repeat protein At3g06240-like OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A0A0M1M5	4.2e-39	50.79	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G572960 PE=4 ...	[more]
A0A6J1DJA3	2.3e-37	53.30	F-box/LRR-repeat protein At2g43260-like OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1HBS1	2.0e-36	47.18	F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462004 PE=4 ...	[more]

BLAST of Moc01g29420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07870.1	1.9e-07	27.44	F-box and associated interaction domains-containing protein	[more]
AT1G54550.1	1.8e-05	24.05	F-box and associated interaction domains-containing protein	[more]
AT3G13680.1	1.1e-04	22.73	F-box and associated interaction domains-containing protein	[more]
AT5G41510.1	1.5e-04	26.17	F-box and associated interaction domains-containing protein	[more]
AT3G57590.1	5.7e-04	29.41	F-box and associated interaction domains-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 72..112 e-value: 7.9E-7 score: 38.7
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 72..113 e-value: 1.2E-9 score: 37.8
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 66..122 score: 9.232525
None	No IPR available	GENE3D	1.20.1280.50		coord: 66..115 e-value: 2.1E-6 score: 29.4
None	No IPR available	PANTHER	PTHR47993	OS09G0372900 PROTEIN-RELATED	coord: 76..257
None	No IPR available	PANTHER	PTHR47993:SF20	F-BOX FAMILY PROTEIN	coord: 76..257
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 56..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc01g29420.1	Moc01g29420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding