Moc01g28900 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc01g28900
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	histone H1
Location	chr1: 20540611 .. 20541293 (-)
RNA-Seq Expression	Moc01g28900
Synteny	Moc01g28900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATCGACCGGAGAAGGAGACGTGGAAGTTCCGGTGGCGGATGTGCCTCCGGCGGAGGCTCCGGCTGCAGAGAAGCCGGCGGAGGCGGAGAAGCCGGTTAAGGAGAGGAAGCCTAGGACTCCGAGGGAGAAGAAGCCTAGGCAGCCGAAAGCCGCTTCACATCCGCCGTATTTTCAGGTATTTTTAGTCAATTGATTTCAATGTAACGAGTTTGATTTGACTGTGTTAATCTTTGATCGAATTCGAGATGAATTGCGCAGATGATCAAGGAAGCAATCTCGTCTCTCAACGAGAAGAATGGCTCGAGTCCGTACGCCATAGCCAAATACATGGAGGAAAAACACAAGGCGGTTCTCCCGGCGAATTTCAGGAAAATCTTGGCTCTTCAATTGAAGAATTCTACTGCCAGAGGAAAATTAGCGAAGATCAAGGCCTCGTATAAGCTATCCGAAGCAGGGAAGAAAGACAAGAACGCATCAAAGGTCGTGAAAGCGAAGGCAGAGAAGAAACCTAGACCAGCAAGAAGCACGAGAACGAGGAGGGCCGCCAAGAAGGAGGAGGCGGCGGCGGCGAAGAAGGTGGTTGCGAAGAAACCGAAGAAATCTACTCCGGCGAAGCCTAAACAGCCAAAATCGATAAGGTCCCCTGCCGCAAAGAGGGCCAAGAAATCCGCGGCATGA

mRNA sequence

ATGTCATCGACCGGAGAAGGAGACGTGGAAGTTCCGGTGGCGGATGTGCCTCCGGCGGAGGCTCCGGCTGCAGAGAAGCCGGCGGAGGCGGAGAAGCCGGTTAAGGAGAGGAAGCCTAGGACTCCGAGGGAGAAGAAGCCTAGGCAGCCGAAAGCCGCTTCACATCCGCCGTATTTTCAGATGATCAAGGAAGCAATCTCGTCTCTCAACGAGAAGAATGGCTCGAGTCCGTACGCCATAGCCAAATACATGGAGGAAAAACACAAGGCGGTTCTCCCGGCGAATTTCAGGAAAATCTTGGCTCTTCAATTGAAGAATTCTACTGCCAGAGGAAAATTAGCGAAGATCAAGGCCTCGTATAAGCTATCCGAAGCAGGGAAGAAAGACAAGAACGCATCAAAGGTCGTGAAAGCGAAGGCAGAGAAGAAACCTAGACCAGCAAGAAGCACGAGAACGAGGAGGGCCGCCAAGAAGGAGGAGGCGGCGGCGGCGAAGAAGGTGGTTGCGAAGAAACCGAAGAAATCTACTCCGGCGAAGCCTAAACAGCCAAAATCGATAAGGTCCCCTGCCGCAAAGAGGGCCAAGAAATCCGCGGCATGA

Coding sequence (CDS)

ATGTCATCGACCGGAGAAGGAGACGTGGAAGTTCCGGTGGCGGATGTGCCTCCGGCGGAGGCTCCGGCTGCAGAGAAGCCGGCGGAGGCGGAGAAGCCGGTTAAGGAGAGGAAGCCTAGGACTCCGAGGGAGAAGAAGCCTAGGCAGCCGAAAGCCGCTTCACATCCGCCGTATTTTCAGATGATCAAGGAAGCAATCTCGTCTCTCAACGAGAAGAATGGCTCGAGTCCGTACGCCATAGCCAAATACATGGAGGAAAAACACAAGGCGGTTCTCCCGGCGAATTTCAGGAAAATCTTGGCTCTTCAATTGAAGAATTCTACTGCCAGAGGAAAATTAGCGAAGATCAAGGCCTCGTATAAGCTATCCGAAGCAGGGAAGAAAGACAAGAACGCATCAAAGGTCGTGAAAGCGAAGGCAGAGAAGAAACCTAGACCAGCAAGAAGCACGAGAACGAGGAGGGCCGCCAAGAAGGAGGAGGCGGCGGCGGCGAAGAAGGTGGTTGCGAAGAAACCGAAGAAATCTACTCCGGCGAAGCCTAAACAGCCAAAATCGATAAGGTCCCCTGCCGCAAAGAGGGCCAAGAAATCCGCGGCATGA

Protein sequence

MSSTGEGDVEVPVADVPPAEAPAAEKPAEAEKPVKERKPRTPREKKPRQPKAASHPPYFQMIKEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTARGKLAKIKASYKLSEAGKKDKNASKVVKAKAEKKPRPARSTRTRRAAKKEEAAAAKKVVAKKPKKSTPAKPKQPKSIRSPAAKRAKKSAA

Homology

[Close]

BLAST of Moc01g28900 vs. NCBI nr
Match: XP_022132486.1 (histone H1 [Momordica charantia])

HSP 1 Score: 343.2 bits (879), Expect = 1.5e-90
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 1   MSSTGEGDVEVPVADVPPAEAPAAEKPAEAEKPVKERKPRTPREKKPRQPKAASHPPYFQ 60
           MSSTGEGDVEVPVADVPPAEAPAAEKPAEAEKPVKERKPRTPREKKPRQPKAASHPPYFQ
Sbjct: 1   MSSTGEGDVEVPVADVPPAEAPAAEKPAEAEKPVKERKPRTPREKKPRQPKAASHPPYFQ 60

Query: 61  MIKEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTARGKLAKIKASY 120
           MIKEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTARGKLAKIKASY
Sbjct: 61  MIKEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTARGKLAKIKASY 120

Query: 121 KLSEAGKKDKNASKVVKAKAEKKPRPARSTRTRRAAKKEEAAAAKKVVAKKPKKSTPAKP 180
           KLSEAGKKDKNASKVVKAKAEKKPRPARSTRTRRAAKKEEAAAAKKVVAKKPKKSTPAKP
Sbjct: 121 KLSEAGKKDKNASKVVKAKAEKKPRPARSTRTRRAAKKEEAAAAKKVVAKKPKKSTPAKP 180

Query: 181 KQPKSIRSPAAKRAKKSAA 200
           KQPKSIRSPAAKRAKKSAA
Sbjct: 181 KQPKSIRSPAAKRAKKSAA 199

[Close]

BLAST of Moc01g28900 vs. NCBI nr
Match: XP_022979052.1 (histone H1 [Cucurbita maxima])

HSP 1 Score: 263.5 bits (672), Expect = 1.5e-66
Identity = 158/204 (77.45%), Postives = 174/204 (85.29%), Query Frame = 0


Query: 1   MSSTGEGDVEVPVADVPPAEAPAAEKPAEAEKPVKERKPRTPREKKPRQPKAASHPPYFQ 60
           MSSTGE +V+VP  D P AE P+AE+P EAEKPV+E+K RTPREKKPRQ K ASHPPYFQ
Sbjct: 1   MSSTGETEVKVPAEDAPSAEVPSAEEPKEAEKPVEEKKSRTPREKKPRQSKVASHPPYFQ 60

Query: 61  MIKEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTARGKLAKIKASY 120
           MIKEAI+SLNEKNGSSPYAIAKYMEEKHK VLPANFRKILALQLKNSTA+GKL KIKASY
Sbjct: 61  MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY 120

Query: 121 KLSEAGKKDKNASKVVKAKAEKKPRPARSTRTRRAAKKEEAA-----AAKKVVAKKPKKS 180
           +LSEAGKKDK ASKV KA AEK  + AR+TR     +K+EAA     A KKVVAKKPK++
Sbjct: 121 ELSEAGKKDKKASKVAKANAEKNTKQARTTRATAGKRKDEAASKTAKAVKKVVAKKPKRT 180

Query: 181 TPAKPKQPKSIRSPAAKRAKKSAA 200
           TPAKPKQPKSIRSPAAKRAKK+ A
Sbjct: 181 TPAKPKQPKSIRSPAAKRAKKAVA 204

[Close]

BLAST of Moc01g28900 vs. NCBI nr
Match: XP_038883821.1 (histone H1 [Benincasa hispida])

HSP 1 Score: 261.9 bits (668), Expect = 4.4e-66
Identity = 164/210 (78.10%), Postives = 177/210 (84.29%), Query Frame = 0


Query: 1   MSSTGEGDVEVPVADVPPAEAPAAEKPAEAEK-PVKERKPRTPREKKPRQPKAASHPPYF 60
           MSS GE +V+VP  DVPP   PAAE+P EAEK PVKE+KPR PREKKPRQ K ASHPPYF
Sbjct: 1   MSSIGEAEVKVPAEDVPPVMVPAAEEPKEAEKPPVKEKKPRAPREKKPRQSKVASHPPYF 60

Query: 61  QMIKEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTARGKLAKIKAS 120
           QMI EAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKIL+LQLKNSTA+GKL KIKAS
Sbjct: 61  QMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILSLQLKNSTAKGKLTKIKAS 120

Query: 121 YKLSEAG-KKDKNASKVVKAKAEKKPRPARSTRT----RRAAKKEEAA-----AAKKVVA 180
           YKLSE G KKDKNA+KV KA AEKK + AR+TRT    R+A KK+EAA     A KKVVA
Sbjct: 121 YKLSETGKKKDKNATKVAKANAEKKTKQARTTRTTGRKRKAVKKDEAASKAAKAVKKVVA 180

Query: 181 KKPKKSTPAKPKQPKSIRSPAAKRAKKSAA 200
           KKPK+STPAKPK PKSIRSPAAKRAKK+ A
Sbjct: 181 KKPKRSTPAKPKPPKSIRSPAAKRAKKAVA 210

[Close]

BLAST of Moc01g28900 vs. NCBI nr
Match: XP_023544256.1 (histone H1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261.5 bits (667), Expect = 5.8e-66
Identity = 157/204 (76.96%), Postives = 174/204 (85.29%), Query Frame = 0


Query: 1   MSSTGEGDVEVPVADVPPAEAPAAEKPAEAEKPVKERKPRTPREKKPRQPKAASHPPYFQ 60
           MSSTGE +V+VP  D P AE P+AE+P E+EKPV+E+K RTPR KKPRQ K ASHPPYFQ
Sbjct: 1   MSSTGEAEVKVPAEDSPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQ 60

Query: 61  MIKEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTARGKLAKIKASY 120
           MIKEAI+SLNEKNGSSPYAIAKYMEEKHK VLPANFRKILALQLKNSTA+GKL KIKASY
Sbjct: 61  MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY 120

Query: 121 KLSEAGKKDKNASKVVKAKAEKKPRPARSTRTRRAAKKEEAA-----AAKKVVAKKPKKS 180
           +LSEAGKKDK ASKV KA AEKK + AR+TR     +K+EAA     A KKVVAKKPK++
Sbjct: 121 ELSEAGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAKKPKRT 180

Query: 181 TPAKPKQPKSIRSPAAKRAKKSAA 200
           TPAKPKQPKSIRSPAAKRAKK+ A
Sbjct: 181 TPAKPKQPKSIRSPAAKRAKKAVA 204

[Close]

BLAST of Moc01g28900 vs. NCBI nr
Match: KAG7034103.1 (hypothetical protein SDJN02_03830 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 259.6 bits (662), Expect = 2.2e-65
Identity = 156/204 (76.47%), Postives = 173/204 (84.80%), Query Frame = 0


Query: 1   MSSTGEGDVEVPVADVPPAEAPAAEKPAEAEKPVKERKPRTPREKKPRQPKAASHPPYFQ 60
           MSSTGE +V+VPV D P  E P+AE+  EAEKPV+E+K RT REKKPRQ K ASHPPYFQ
Sbjct: 1   MSSTGEAEVKVPVEDAPSVEVPSAEETKEAEKPVEEKKSRTSREKKPRQSKVASHPPYFQ 60

Query: 61  MIKEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTARGKLAKIKASY 120
           MIKEAI+SLNEKNGSSPYAIAKYMEEKHK VLPANFRKILALQLKNSTA+GKL K+KASY
Sbjct: 61  MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKVKASY 120

Query: 121 KLSEAGKKDKNASKVVKAKAEKKPRPARSTRTRRAAKKEEAA-----AAKKVVAKKPKKS 180
           +LSEAGKKDK ASKV KA AEKK + AR+TR     +K+EAA     A KKVVAKKPK++
Sbjct: 121 ELSEAGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAKKPKRT 180

Query: 181 TPAKPKQPKSIRSPAAKRAKKSAA 200
           TPAKPKQPKSIRSPAAKRAKK+ A
Sbjct: 181 TPAKPKQPKSIRSPAAKRAKKAVA 204

[Close]

BLAST of Moc01g28900 vs. ExPASy Swiss-Prot
Match: P40267 (Histone H1 OS=Solanum pennellii OX=28526 PE=2 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 9.9e-45
Identity = 124/206 (60.19%), Postives = 146/206 (70.87%), Query Frame = 0


Query: 4   TGEGDVEVPVADVPPAEAPAAEKPAEAEKPVKERKPRTPREKKPRQPKAASHPPYFQMIK 63
           T  G+VE P     P EA   ++ A    P  ++KPR P+EKKP+  KA +HPPYFQMIK
Sbjct: 2   TAIGEVENPTVVQRPTEASKVKEQA----PATDKKPRAPKEKKPKSAKAVTHPPYFQMIK 61

Query: 64  EAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTARGKLAKIKASYKLS 123
           EA+ +LNEK GSSPYA+AKYME+KHK  LPANFRKIL LQLKNS A+GKL KIKASYKLS
Sbjct: 62  EALLALNEKGGSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKLIKIKASYKLS 121

Query: 124 EAGKKD----KNASKVVKAKAEKKPRPARSTRTRRAAKKEE-------AAAAKKVVAKKP 183
           EAGKK+     +  K+ KA ++KKPR  R+T T  AAKK E           KKV AK+ 
Sbjct: 122 EAGKKETTTKTSTKKLPKADSKKKPRSTRATAT--AAKKTEVPKKAKATPKPKKVGAKRT 181

Query: 184 KKSTPAKPKQPKSIRSPAAKRAKKSA 199
           +KSTPAK KQPKSI+SPAAKRAKK A
Sbjct: 182 RKSTPAKAKQPKSIKSPAAKRAKKIA 201

[Close]

BLAST of Moc01g28900 vs. ExPASy Swiss-Prot
Match: P27806 (Histone H1 OS=Triticum aestivum OX=4565 PE=2 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 1.0e-20
Identity = 92/210 (43.81%), Postives = 116/210 (55.24%), Query Frame = 0


Query: 3   STGEGDVEVPVADVPPA-----EAPAAEKPAEAEKPVKERKPRTPREKKPRQPKAASHPP 62
           ST     ++PV  V  A     + PAA KPA+A K  K +K  TP  KKPR   A  HP 
Sbjct: 2   STDVAAADIPVPQVEVAADAAVDTPAA-KPAKAPKAAKAKK-STPGPKKPRVTPA--HPS 61

Query: 63  YFQMIKEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTARGKLAKIK 122
           Y +M+ EAI++L E++GSS  AI K++E+KHKA LPANFRKIL  Q+K   A GKL K+K
Sbjct: 62  YAEMVSEAIAALKERSGSSTIAIGKFIEDKHKAHLPANFRKILLTQIKKLVAAGKLTKVK 121

Query: 123 ASYKLSEAGKKDKNASKVVKAKAEKKPRPARSTRTRRAAKKEEAAAAKKVVAKKPKKSTP 182
            SYKL++       A   VK K   K +PA   + +  AKK  A +  K  A KPK   P
Sbjct: 122 GSYKLAK-------APAAVKPKTATKKKPAAKPKAKAPAKKTAAKSPAKKAAAKPKAKAP 181

Query: 183 AKPK---------QPKSIRSPAAKRAKKSA 199
           AK K         +PK+   P AK A K A
Sbjct: 182 AKAKAVAKPKAAAKPKAAAKPKAKAAAKKA 200

[Close]

BLAST of Moc01g28900 vs. ExPASy Swiss-Prot
Match: P08283 (Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.2e-19
Identity = 94/197 (47.72%), Postives = 114/197 (57.87%), Query Frame = 0


Query: 20  EAPAAEKP-AEAEKPVKERKPRTPREKKPRQPKAASHPPYFQMIKEAISSLNEKNGSSPY 79
           E P  E+P AE EK  K +  +  +  KPR P  ASHP Y +MIK+AI SL EKNGSS Y
Sbjct: 28  EVPEKEEPKAEVEKTKKAKGSKPKKASKPRNP--ASHPTYEEMIKDAIVSLKEKNGSSQY 87

Query: 80  AIAKYMEEKHKAVLPANFRKILALQLKNSTARGKLAKIKASYKLSEAGKKDKNA------ 139
           AIAK++EEK K  LPANF+K+L   LK + A GKL K+K S+KLS A KK   A      
Sbjct: 88  AIAKFIEEKQKQ-LPANFKKLLLQNLKKNVASGKLIKVKGSFKLSAAAKKPAVAKPKAKT 147

Query: 140 ---SKVVKAKAEKKPRPARSTRTRRAAKKEEAAAAKKVVAKKPK------KSTPAKPK-- 198
              +K VKAK   KP+     + + A+K +  AA  K  A KPK      K T AKPK  
Sbjct: 148 AAKAKSVKAKPAAKPKAKAVVKPKVASKAKAVAAKPKKAAAKPKTVAAKTKPTAAKPKAV 207

[Close]

BLAST of Moc01g28900 vs. ExPASy Swiss-Prot
Match: P23444 (Histone H1 OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 9.4e-19
Identity = 90/195 (46.15%), Postives = 112/195 (57.44%), Query Frame = 0


Query: 11  VPVADVPPAEAPAAEKPAEAEKPVKERKPRTPREKKPRQPKAASHPPYFQMIKEAISSLN 70
           V  A   PA+APAA  PA      K +K   P+++      + +H PY +M+ EAI+SL 
Sbjct: 13  VDAAPEAPADAPAA--PAADANAAKAKKATAPKKR-----ASPTHLPYAEMVSEAITSLK 72

Query: 71  EKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTARGKLAKIKASYKLSEAGK--- 130
           E+ GSS YAIAK++E+KHKA LP NFRK+L +QLK   A GKL K+K SYKLS A K   
Sbjct: 73  ERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYKLSSATKPNP 132

Query: 131 KDKNASKVVKAKAEKKPRPARSTRTRRAAKKEEAA----AAKKVVAKKPKKSTPAKPKQP 190
           K K A K  K  A KKP+ A   + +  AK + A     AAK     KPK  TPAKPK  
Sbjct: 133 KPKAAPKKPKTGA-KKPKAAAKPKAKTPAKAKPATKPKPAAKPKAVVKPK--TPAKPK-- 192

Query: 191 KSIRSPAAKRAKKSA 199
                PAAK   K+A
Sbjct: 193 ---AKPAAKAKPKTA 192

[Close]

BLAST of Moc01g28900 vs. ExPASy Swiss-Prot
Match: Q08864 (Histone H1-I OS=Volvox carteri OX=3067 GN=H1-I PE=2 SV=3)

HSP 1 Score: 92.0 bits (227), Expect = 7.9e-18
Identity = 75/186 (40.32%), Postives = 111/186 (59.68%), Query Frame = 0


Query: 12  PVADVPPAEAPAAEKPAEAEKPVKERKPRTPREKKPRQPKAASHPPYFQMIKEAISSLNE 71
           P A+ P A+AP A+ P + + P   ++P+ P+EKKP+   A +HPPY +M+K+AI++L E
Sbjct: 18  PAAEAPKAKAPKAKAPKQPKAPKAPKEPKAPKEKKPK--AAPTHPPYIEMVKDAITTLKE 77

Query: 72  KNGSSPYAIAKYMEEKH-KAVLPANFRKILALQLKNSTARGKLAKIKASYKLSEAGKKDK 131
           +NGSS  A+ K++E K+ K +   NF K L+  +K     GKL K+K S+KLSEA K   
Sbjct: 78  RNGSSLPALKKFIENKYGKDIHDKNFAKTLSQVVKTFVKGGKLVKVKGSFKLSEALKAKA 137

Query: 132 NASKVVKAKAEKKPRPARSTRTRRAAKKEEAAAAKKVVAKKPKKSTPAKPKQPKSIRSPA 191
             S   KAKA+ + +P +S      AK ++A A KK  A K K   P K K+ K  +  A
Sbjct: 138 KKSTPKKAKADGEAKPKKS-----EAKPKKAEAVKKTKAPKEKVERPKKEKKEKVEKKKA 196

Query: 192 AKRAKK 197
             +A+K
Sbjct: 198 TPKAEK 196

[Close]

BLAST of Moc01g28900 vs. ExPASy TrEMBL
Match: A0A6J1BSE6 (histone H1 OS=Momordica charantia OX=3673 GN=LOC111005331 PE=3 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 7.3e-91
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 1   MSSTGEGDVEVPVADVPPAEAPAAEKPAEAEKPVKERKPRTPREKKPRQPKAASHPPYFQ 60
           MSSTGEGDVEVPVADVPPAEAPAAEKPAEAEKPVKERKPRTPREKKPRQPKAASHPPYFQ
Sbjct: 1   MSSTGEGDVEVPVADVPPAEAPAAEKPAEAEKPVKERKPRTPREKKPRQPKAASHPPYFQ 60

Query: 61  MIKEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTARGKLAKIKASY 120
           MIKEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTARGKLAKIKASY
Sbjct: 61  MIKEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTARGKLAKIKASY 120

Query: 121 KLSEAGKKDKNASKVVKAKAEKKPRPARSTRTRRAAKKEEAAAAKKVVAKKPKKSTPAKP 180
           KLSEAGKKDKNASKVVKAKAEKKPRPARSTRTRRAAKKEEAAAAKKVVAKKPKKSTPAKP
Sbjct: 121 KLSEAGKKDKNASKVVKAKAEKKPRPARSTRTRRAAKKEEAAAAKKVVAKKPKKSTPAKP 180

Query: 181 KQPKSIRSPAAKRAKKSAA 200
           KQPKSIRSPAAKRAKKSAA
Sbjct: 181 KQPKSIRSPAAKRAKKSAA 199

[Close]

BLAST of Moc01g28900 vs. ExPASy TrEMBL
Match: A0A6J1IMR2 (histone H1 OS=Cucurbita maxima OX=3661 GN=LOC111478808 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 7.3e-67
Identity = 158/204 (77.45%), Postives = 174/204 (85.29%), Query Frame = 0


Query: 1   MSSTGEGDVEVPVADVPPAEAPAAEKPAEAEKPVKERKPRTPREKKPRQPKAASHPPYFQ 60
           MSSTGE +V+VP  D P AE P+AE+P EAEKPV+E+K RTPREKKPRQ K ASHPPYFQ
Sbjct: 1   MSSTGETEVKVPAEDAPSAEVPSAEEPKEAEKPVEEKKSRTPREKKPRQSKVASHPPYFQ 60

Query: 61  MIKEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTARGKLAKIKASY 120
           MIKEAI+SLNEKNGSSPYAIAKYMEEKHK VLPANFRKILALQLKNSTA+GKL KIKASY
Sbjct: 61  MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY 120

Query: 121 KLSEAGKKDKNASKVVKAKAEKKPRPARSTRTRRAAKKEEAA-----AAKKVVAKKPKKS 180
           +LSEAGKKDK ASKV KA AEK  + AR+TR     +K+EAA     A KKVVAKKPK++
Sbjct: 121 ELSEAGKKDKKASKVAKANAEKNTKQARTTRATAGKRKDEAASKTAKAVKKVVAKKPKRT 180

Query: 181 TPAKPKQPKSIRSPAAKRAKKSAA 200
           TPAKPKQPKSIRSPAAKRAKK+ A
Sbjct: 181 TPAKPKQPKSIRSPAAKRAKKAVA 204

[Close]

BLAST of Moc01g28900 vs. ExPASy TrEMBL
Match: A0A6J1GFQ2 (histone H1 OS=Cucurbita moschata OX=3662 GN=LOC111453744 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.8e-65
Identity = 156/204 (76.47%), Postives = 172/204 (84.31%), Query Frame = 0


Query: 1   MSSTGEGDVEVPVADVPPAEAPAAEKPAEAEKPVKERKPRTPREKKPRQPKAASHPPYFQ 60
           MSSTGE +V+VP  D P  E P+AE+  EAEKPV+E+K RTPREKKPRQ K ASHPPYFQ
Sbjct: 1   MSSTGEAEVKVPAEDAPSVEVPSAEETKEAEKPVEEKKSRTPREKKPRQSKVASHPPYFQ 60

Query: 61  MIKEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTARGKLAKIKASY 120
           MI EAI+SLNEKNGSSPYAIAKYMEEKHK VLPANFRKILALQLKNSTA+GKL KIKASY
Sbjct: 61  MIMEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY 120

Query: 121 KLSEAGKKDKNASKVVKAKAEKKPRPARSTRTRRAAKKEEAA-----AAKKVVAKKPKKS 180
           +LSEAGKKDK ASKV KA AEKK + AR+TR     +K+EAA     A KKVVAKKPK++
Sbjct: 121 ELSEAGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAMKKVVAKKPKRT 180

Query: 181 TPAKPKQPKSIRSPAAKRAKKSAA 200
           TPAKPKQPKSIRSPAAKRAKK+ A
Sbjct: 181 TPAKPKQPKSIRSPAAKRAKKAVA 204

[Close]

BLAST of Moc01g28900 vs. ExPASy TrEMBL
Match: A0A0A0KJB6 (Histone H1 OS=Cucumis sativus OX=3659 GN=Csa_6G505280 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 2.0e-64
Identity = 160/205 (78.05%), Postives = 172/205 (83.90%), Query Frame = 0


Query: 1   MSSTGE-GDVEVPVADVPPAEAPAAEKPAEAEKPVKERKPRTPREKKPRQPKAASHPPYF 60
           MSSTGE  +V+VP  DV P E PA E+P E EKPVKE+KPR  REKKPRQ K ASHPPYF
Sbjct: 1   MSSTGEAAEVKVPAEDVAPVEVPATEEPKEVEKPVKEKKPRATREKKPRQSKVASHPPYF 60

Query: 61  QMIKEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTARGKLAKIKAS 120
           QMI EAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTA+GKL KIKAS
Sbjct: 61  QMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKAS 120

Query: 121 YKLSEAG-KKDKNASKVVKAKAEKKPRPARSTRT----RRAAKKEEAA--AAKKVVAKKP 180
           YKLSE G KKD NA+KV KA AEKK + AR+TRT    R+A K EEA   A KKVVAKKP
Sbjct: 121 YKLSETGKKKDMNATKVAKANAEKKTKQARTTRTTGRKRKAVKTEEAVSKAVKKVVAKKP 180

Query: 181 KKSTPAKPKQPKSIRSPAAKRAKKS 198
           K+STPAKPKQPKSI+SPAAKRAKK+
Sbjct: 181 KRSTPAKPKQPKSIKSPAAKRAKKA 205

[Close]

BLAST of Moc01g28900 vs. ExPASy TrEMBL
Match: A0A5A7SK97 (Histone H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001460 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 5.8e-64
Identity = 161/206 (78.16%), Postives = 174/206 (84.47%), Query Frame = 0


Query: 1   MSSTGE-GDVEVPVADVPPAE-APAAEKPAEAEKPVKERKPRTPREKKPRQPKAASHPPY 60
           M+STGE  +V+VP  DV P E  PA E+P E EKPVKE+KPR PREKKPRQ K ASHPPY
Sbjct: 1   MTSTGEAAEVKVPAEDVAPVEVVPATEEPKEVEKPVKEKKPRAPREKKPRQSKVASHPPY 60

Query: 61  FQMIKEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTARGKLAKIKA 120
           FQMI EAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTA+GKL KIKA
Sbjct: 61  FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA 120

Query: 121 SYKLSEAG-KKDKNASKVVKAKAEKKPRPARSTRT----RRAAKKEEAA--AAKKVVAKK 180
           SYKLSE G KKDKNA+KV KA AEK  + AR+TRT    R+A KKEEA   A KKVVAKK
Sbjct: 121 SYKLSEIGKKKDKNATKVAKANAEKITKQARTTRTTGRKRKAVKKEEAVSKAVKKVVAKK 180

Query: 181 PKKSTPAKPKQPKSIRSPAAKRAKKS 198
           PK+STPAKPKQPKSI+SPAAKRAKK+
Sbjct: 181 PKRSTPAKPKQPKSIKSPAAKRAKKA 206

[Close]

BLAST of Moc01g28900 vs. TAIR 10
Match: AT2G18050.1 (histone H1-3 )

HSP 1 Score: 121.3 bits (303), Expect = 8.7e-28
Identity = 85/167 (50.90%), Postives = 110/167 (65.87%), Query Frame = 0


Query: 40  RTPREKKPRQPKAASHPPYFQMIKEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKI 99
           +TP  KKPR+PK  +HPPYFQMIKEA+  L EKNGSSPYAIAK +EEKHK++LP +FRK 
Sbjct: 9   KTPAAKKPRKPKTTTHPPYFQMIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRKT 68

Query: 100 LALQLKNSTARGKLAKIKASYKLSEAGK-----KDKNASKVVKAKAEKKPRPARSTRTRR 159
           L+LQLKNS A+GKL KI+ASYKLS+  K     +DK   K +K + ++  +  RS+ TR 
Sbjct: 69  LSLQLKNSVAKGKLVKIRASYKLSDTTKMITRQQDKKNKKNMKQEDKEITKRTRSSSTR- 128

Query: 160 AAKKEEAAAAKKVVA--KKPKKSTPAKPKQPKSIRSPAAKRAKKSAA 200
                     KK V+  K+ KK    K +QPKSI+S   K+    A+
Sbjct: 129 ---------PKKTVSVNKQEKKRKVKKARQPKSIKSSVGKKKAMKAS 165

[Close]

BLAST of Moc01g28900 vs. TAIR 10
Match: AT2G18050.2 (histone H1-3 )

HSP 1 Score: 92.4 bits (228), Expect = 4.3e-19
Identity = 71/146 (48.63%), Postives = 93/146 (63.70%), Query Frame = 0


Query: 61  MIKEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTARGKLAKIKASY 120
           MIKEA+  L EKNGSSPYAIAK +EEKHK++LP +FRK L+LQLKNS A+GKL KI+ASY
Sbjct: 1   MIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRKTLSLQLKNSVAKGKLVKIRASY 60

Query: 121 KLSEAGK-----KDKNASKVVKAKAEKKPRPARSTRTRRAAKKEEAAAAKKVVA--KKPK 180
           KLS+  K     +DK   K +K + ++  +  RS+ TR           KK V+  K+ K
Sbjct: 61  KLSDTTKMITRQQDKKNKKNMKQEDKEITKRTRSSSTR----------PKKTVSVNKQEK 120

Query: 181 KSTPAKPKQPKSIRSPAAKRAKKSAA 200
           K    K +QPKSI+S   K+    A+
Sbjct: 121 KRKVKKARQPKSIKSSVGKKKAMKAS 136

[Close]

BLAST of Moc01g28900 vs. TAIR 10
Match: AT1G06760.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 81.6 bits (200), Expect = 7.6e-16
Identity = 81/203 (39.90%), Postives = 108/203 (53.20%), Query Frame = 0


Query: 2   SSTGEGDVEVPVADVPPAEAPAAEKPA---EAEKPVKERKPRTPREKKPRQPKAASHPPY 61
           ++T EG+     AD P  +A   +KPA      K VKE K +      P++   +SHP Y
Sbjct: 9   AATIEGNT---AADAPVTDAAVEKKPAAKGRKTKNVKEVKEKKTVAAAPKKRTVSSHPTY 68

Query: 62  FQMIKEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTARGKLAKIKA 121
            +MIK+AI +L E+ GSS YAI K++EEK K  LP  FRK+L L LK   A GKL K+KA
Sbjct: 69  EEMIKDAIVTLKERTGSSQYAIQKFIEEKRKE-LPPTFRKLLLLNLKRLVASGKLVKVKA 128

Query: 122 SYKLSEAGKKDKNASKVVKAKAEKKPRPARSTRTRRAAKKEEAAAAKKVVAKKPK----K 181
           S+KL  A  K  +     +  A  K +PA    T+   K   A+ AKK +A KPK    K
Sbjct: 129 SFKLPSASAKASSPKAAAEKSAPAKKKPATVAVTKAKRKVAAASKAKKTIAVKPKTAAAK 188

Query: 182 STPAKPKQPKSIRSPAAKRAKKS 198
              AK K     R+ AA   +K+
Sbjct: 189 KVTAKAKAKPVPRATAAATKRKA 207

[Close]

BLAST of Moc01g28900 vs. TAIR 10
Match: AT2G30620.2 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 68.9 bits (167), Expect = 5.1e-12
Identity = 74/183 (40.44%), Postives = 102/183 (55.74%), Query Frame = 0


Query: 17  PPAEAPAAEKPAEAEKPVKERKPRTPREKKPRQPKAASHPPYFQMIKEAISSLNEKNGSS 76
           P A+   ++K   A+   K  K   P +KK      +SHP Y +MIK+AI +L E+ GSS
Sbjct: 28  PAAKGGKSKKTTTAKATKKPVKAAAPTKKK----TTSSHPTYEEMIKDAIVTLKERTGSS 87

Query: 77  PYAIAKYMEEKHKAVLPANFRKILALQLKNSTARGKLAKIKASYKLSEA--GKKDKNASK 136
            YAI K++EEKHK+ LP  FRK+L + LK   A  KL K+KAS+K+  A      K A+ 
Sbjct: 88  QYAIQKFIEEKHKS-LPPTFRKLLLVNLKRLVASEKLVKVKASFKIPSARSAATPKPAAP 147

Query: 137 V-VKAKAEKKPRPARSTRTRRAAKKEEAAAAKKVVAKKPKKSTPAKPKQPKSIRSPAAKR 196
           V  KA    KP+ +R T TR +  K+ AA AKKV   K   +   K K P   +  + ++
Sbjct: 148 VKKKATVVAKPKASR-TSTRTSPGKKVAAPAKKVAVTKKAPAKSVKVKSP--AKRASTRK 202

[Close]

BLAST of Moc01g28900 vs. TAIR 10
Match: AT2G30620.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 65.1 bits (157), Expect = 7.4e-11
Identity = 72/191 (37.70%), Postives = 97/191 (50.79%), Query Frame = 0


Query: 17  PPAEAPAAEKPAEAEKPVKERKPRTPREKKPRQPKAASHPPYFQMIKEAISSLNEKNGSS 76
           P A+   ++K   A+   K  K   P +KK      +SHP Y +MIK+AI +L E+ GSS
Sbjct: 28  PAAKGGKSKKTTTAKATKKPVKAAAPTKKK----TTSSHPTYEEMIKDAIVTLKERTGSS 87

Query: 77  PYAIAKYMEEKHKAVLPANFRKILALQLKNSTARGKLAKIKASYKLSEAG---------- 136
            YAI K++EEKHK+ LP  FRK+L + LK   A  KL K+KAS+K+  A           
Sbjct: 88  QYAIQKFIEEKHKS-LPPTFRKLLLVNLKRLVASEKLVKVKASFKIPSARSAATPKPAAP 147

Query: 137 -KKDKNASKVVKAKAEKKPRPARSTRTRRAAKKEEA--AAAKKVVAKKPKKSTPAKPKQP 195
            KK        K K      PA++    +  KK  A   A  KV AK   K T AKPK  
Sbjct: 148 VKKKATVVAKPKGKVAAAVAPAKAKAAAKGTKKPAAKVVAKAKVTAKPKAKVTAAKPKS- 207

The following BLAST results are available for this feature:

BLAST of Moc01g28900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132486.1	1.5e-90	100.00	histone H1 [Momordica charantia]	[more]
XP_022979052.1	1.5e-66	77.45	histone H1 [Cucurbita maxima]	[more]
XP_038883821.1	4.4e-66	78.10	histone H1 [Benincasa hispida]	[more]
XP_023544256.1	5.8e-66	76.96	histone H1 [Cucurbita pepo subsp. pepo]	[more]
KAG7034103.1	2.2e-65	76.47	hypothetical protein SDJN02_03830 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Moc01g28900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P40267	9.9e-45	60.19	Histone H1 OS=Solanum pennellii OX=28526 PE=2 SV=1	[more]
P27806	1.0e-20	43.81	Histone H1 OS=Triticum aestivum OX=4565 PE=2 SV=2	[more]
P08283	3.2e-19	47.72	Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1	[more]
P23444	9.4e-19	46.15	Histone H1 OS=Zea mays OX=4577 PE=2 SV=2	[more]
Q08864	7.9e-18	40.32	Histone H1-I OS=Volvox carteri OX=3067 GN=H1-I PE=2 SV=3	[more]

BLAST of Moc01g28900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BSE6	7.3e-91	100.00	histone H1 OS=Momordica charantia OX=3673 GN=LOC111005331 PE=3 SV=1	[more]
A0A6J1IMR2	7.3e-67	77.45	histone H1 OS=Cucurbita maxima OX=3661 GN=LOC111478808 PE=3 SV=1	[more]
A0A6J1GFQ2	1.8e-65	76.47	histone H1 OS=Cucurbita moschata OX=3662 GN=LOC111453744 PE=3 SV=1	[more]
A0A0A0KJB6	2.0e-64	78.05	Histone H1 OS=Cucumis sativus OX=3659 GN=Csa_6G505280 PE=3 SV=1	[more]
A0A5A7SK97	5.8e-64	78.16	Histone H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001460 PE...	[more]

BLAST of Moc01g28900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18050.1	8.7e-28	50.90	histone H1-3	[more]
AT2G18050.2	4.3e-19	48.63	histone H1-3	[more]
AT1G06760.1	7.6e-16	39.90	winged-helix DNA-binding transcription factor family protein	[more]
AT2G30620.2	5.1e-12	40.44	winged-helix DNA-binding transcription factor family protein	[more]
AT2G30620.1	7.4e-11	37.70	winged-helix DNA-binding transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005819	Linker histone H1/H5	PRINTS	PR00624	HISTONEH5	coord: 68..85 score: 33.33 coord: 41..62 score: 29.8 coord: 141..155 score: 22.96 coord: 172..189 score: 29.01
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 52..119 e-value: 7.6E-30 score: 115.1
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 55..122 e-value: 7.9E-17 score: 61.4
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 54..124 score: 29.798494
IPR005818	Linker histone H1/H5, domain H15	CDD	cd00073	H15	coord: 52..130 e-value: 3.28524E-21 score: 81.5135
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 50..147 e-value: 2.2E-19 score: 71.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..199
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..199
None	No IPR available	PANTHER	PTHR11467:SF50	HISTONE H1	coord: 3..199
None	No IPR available	PANTHER	PTHR11467	HISTONE H1	coord: 3..199
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 52..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc01g28900.1	Moc01g28900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030261	chromosome condensation
biological_process	GO:0045910	negative regulation of DNA recombination
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0016584	nucleosome positioning
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0031492	nucleosomal DNA binding
molecular_function	GO:0003677	DNA binding