Moc01g28260 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc01g28260
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	GATA transcription factor 18-like
Location	chr1: 20068840 .. 20069610 (+)
RNA-Seq Expression	Moc01g28260
Synteny	Moc01g28260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCAGCGGTGCGGCAGCTACCAATGCTACTCCGCCGGCGAGTGTTCTTGCGGGGCGTTCTACGGGCAGCAAGGCAGCTACTACTCCATGCCGGCCTATAACGGTAATTACTACGATTCGGAAAATTACTCCTTCGAGTCATCTTCTCCTGTCGACTGCACGCTCTCTCTTGGAACGCCGTCCACTCGTATGACGGAGTACGACGAGAAGCGCCGCGAGGAACAGCAGTCGGCTAATTCCATTTCCAACTTTGGCTGGGACTTGCCTCGAGGCAAACACGGCCCGTCTTCCAAAAGTGGCCGCCGTGGTGCTGATAAATCTGCTGCCAATGGGGATCAAATGTTCGCTCGCCACTGTGCCAATTGCGACACTACCACTACGCCCCTCTGGCGCAATGGCCCTAGTGGTCCCAAGGTAATTGACCCACCCACGCAACCTATTTTAAACTGAAATTAGATTGGATTGAATTTAAAAGCTTAAGCTCACGGATTACGGGACATGGTGTTTTTTTTATTTATGCAGTCTTTGTGCAATGCGTGTGGGATTCGATACAAGAAGGAAGAGAGAAAAGCAGCGAACTCGGGGCAGCAGGCGAGTTCGATGTATAGGAACGAGGCCAGCTCATGGCTTCCCCACCATTCTCACAGCCAGAGAACGCCGCGATACCCGCACGGCATTACCAACGATATCAATCCCGGCGTCGCCTTTCTCTCATGGAGCCTCAATGACTCGGAGCAACCTCAGCTTTACTACGACTTCACAAGTTAA

mRNA sequence

ATGATGCAGCGGTGCGGCAGCTACCAATGCTACTCCGCCGGCGAGTGTTCTTGCGGGGCGTTCTACGGGCAGCAAGGCAGCTACTACTCCATGCCGGCCTATAACGGTAATTACTACGATTCGGAAAATTACTCCTTCGAGTCATCTTCTCCTGTCGACTGCACGCTCTCTCTTGGAACGCCGTCCACTCGTATGACGGAGTACGACGAGAAGCGCCGCGAGGAACAGCAGTCGGCTAATTCCATTTCCAACTTTGGCTGGGACTTGCCTCGAGGCAAACACGGCCCGTCTTCCAAAAGTGGCCGCCGTGGTGCTGATAAATCTGCTGCCAATGGGGATCAAATGTTCGCTCGCCACTGTGCCAATTGCGACACTACCACTACGCCCCTCTGGCGCAATGGCCCTAGTGGTCCCAAGTCTTTGTGCAATGCGTGTGGGATTCGATACAAGAAGGAAGAGAGAAAAGCAGCGAACTCGGGGCAGCAGGCGAGTTCGATGTATAGGAACGAGGCCAGCTCATGGCTTCCCCACCATTCTCACAGCCAGAGAACGCCGCGATACCCGCACGGCATTACCAACGATATCAATCCCGGCGTCGCCTTTCTCTCATGGAGCCTCAATGACTCGGAGCAACCTCAGCTTTACTACGACTTCACAAGTTAA

Coding sequence (CDS)

ATGATGCAGCGGTGCGGCAGCTACCAATGCTACTCCGCCGGCGAGTGTTCTTGCGGGGCGTTCTACGGGCAGCAAGGCAGCTACTACTCCATGCCGGCCTATAACGGTAATTACTACGATTCGGAAAATTACTCCTTCGAGTCATCTTCTCCTGTCGACTGCACGCTCTCTCTTGGAACGCCGTCCACTCGTATGACGGAGTACGACGAGAAGCGCCGCGAGGAACAGCAGTCGGCTAATTCCATTTCCAACTTTGGCTGGGACTTGCCTCGAGGCAAACACGGCCCGTCTTCCAAAAGTGGCCGCCGTGGTGCTGATAAATCTGCTGCCAATGGGGATCAAATGTTCGCTCGCCACTGTGCCAATTGCGACACTACCACTACGCCCCTCTGGCGCAATGGCCCTAGTGGTCCCAAGTCTTTGTGCAATGCGTGTGGGATTCGATACAAGAAGGAAGAGAGAAAAGCAGCGAACTCGGGGCAGCAGGCGAGTTCGATGTATAGGAACGAGGCCAGCTCATGGCTTCCCCACCATTCTCACAGCCAGAGAACGCCGCGATACCCGCACGGCATTACCAACGATATCAATCCCGGCGTCGCCTTTCTCTCATGGAGCCTCAATGACTCGGAGCAACCTCAGCTTTACTACGACTTCACAAGTTAA

Protein sequence

MMQRCGSYQCYSAGECSCGAFYGQQGSYYSMPAYNGNYYDSENYSFESSSPVDCTLSLGTPSTRMTEYDEKRREEQQSANSISNFGWDLPRGKHGPSSKSGRRGADKSAANGDQMFARHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAANSGQQASSMYRNEASSWLPHHSHSQRTPRYPHGITNDINPGVAFLSWSLNDSEQPQLYYDFTS

Homology

[Close]

BLAST of Moc01g28260 vs. NCBI nr
Match: XP_022978554.1 (GATA transcription factor 18-like [Cucurbita maxima])

HSP 1 Score: 394.8 bits (1013), Expect = 4.8e-106
Identity = 193/224 (86.16%), Postives = 206/224 (91.96%), Query Frame = 0


Query: 1   MMQRCGSYQCYSAGECSCGAFYGQQGSYYSMPAYNGNYYDSENYSFESSSPVDCTLSLGT 60
           MMQRCGSYQCYSAGECSCGAFYGQQGSY+S PAYN NYY+SE+YSF+SSSPVDCTLSLGT
Sbjct: 1   MMQRCGSYQCYSAGECSCGAFYGQQGSYFSTPAYN-NYYESEHYSFDSSSPVDCTLSLGT 60

Query: 61  PSTRMTEYDEKRREEQQSANSISNFGWDLPRGKHGPSSKSGRR----GADKSAANGDQMF 120
           PSTRMTEYDEKRREEQ SA   SNF WDL R KHG SSK+ RR    G DKS ANGDQMF
Sbjct: 61  PSTRMTEYDEKRREEQHSA---SNFAWDLSRTKHGHSSKTSRRSGNTGGDKSRANGDQMF 120

Query: 121 ARHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAANSGQQASSMYRNEASSWLP 180
           +RHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAA+SGQQA+SMY+NEASSWL 
Sbjct: 121 SRHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQANSMYKNEASSWLQ 180

Query: 181 HHSHSQRTPRYPHGITNDINPGVAFLSWSLNDSEQPQLYYDFTS 221
           HHSHSQ+TPR+PHGITND+NPGVAFLSWSLND+EQPQLYYDFTS
Sbjct: 181 HHSHSQKTPRFPHGITNDLNPGVAFLSWSLNDTEQPQLYYDFTS 220

[Close]

BLAST of Moc01g28260 vs. NCBI nr
Match: XP_022949779.1 (GATA transcription factor 18-like [Cucurbita moschata] >XP_023544803.1 GATA transcription factor 18-like [Cucurbita pepo subsp. pepo] >KAG7034143.1 GATA transcription factor 18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 392.5 bits (1007), Expect = 2.4e-105
Identity = 192/224 (85.71%), Postives = 205/224 (91.52%), Query Frame = 0


Query: 1   MMQRCGSYQCYSAGECSCGAFYGQQGSYYSMPAYNGNYYDSENYSFESSSPVDCTLSLGT 60
           MMQRCGSYQCYSAGECSCGAFY QQGSY+S PAYN NYY+SE+YSF+SSSPVDCTLSLGT
Sbjct: 1   MMQRCGSYQCYSAGECSCGAFYAQQGSYFSTPAYN-NYYESEHYSFDSSSPVDCTLSLGT 60

Query: 61  PSTRMTEYDEKRREEQQSANSISNFGWDLPRGKHGPSSKSGRR----GADKSAANGDQMF 120
           PSTRMTEYDEKRREEQ SA   SNF WDL R KHG SSK+ RR    G DKS ANGDQMF
Sbjct: 61  PSTRMTEYDEKRREEQHSA---SNFAWDLSRTKHGHSSKTSRRSGNTGGDKSRANGDQMF 120

Query: 121 ARHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAANSGQQASSMYRNEASSWLP 180
           +RHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAA+SGQQA+SMY+NEASSWL 
Sbjct: 121 SRHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQANSMYKNEASSWLQ 180

Query: 181 HHSHSQRTPRYPHGITNDINPGVAFLSWSLNDSEQPQLYYDFTS 221
           HHSHSQ+TPR+PHGITND+NPGVAFLSWSLND+EQPQLYYDFTS
Sbjct: 181 HHSHSQKTPRFPHGITNDLNPGVAFLSWSLNDTEQPQLYYDFTS 220

[Close]

BLAST of Moc01g28260 vs. NCBI nr
Match: KAG6603971.1 (Zinc-finger homeodomain protein 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 391.3 bits (1004), Expect = 5.3e-105
Identity = 191/223 (85.65%), Postives = 205/223 (91.93%), Query Frame = 0


Query: 1   MMQRCGSYQCYSAGECSCGAFYGQQGSYYSMPAYNGNYYDSENYSFESSSPVDCTLSLGT 60
           MMQRCGSYQCYSAGECSCGAFY QQGSY+S PAYN NYY+SE+YSF+SSSPVDCTLSLGT
Sbjct: 1   MMQRCGSYQCYSAGECSCGAFYAQQGSYFSTPAYN-NYYESEHYSFDSSSPVDCTLSLGT 60

Query: 61  PSTRMTEYDEKRREEQQSANSISNFGWDLPRGKHGPSSKSGRR----GADKSAANGDQMF 120
           PSTRMTEYDEKRREEQ SA   SNF WDL R KHG SSK+ RR    G+DKS ANGDQMF
Sbjct: 61  PSTRMTEYDEKRREEQHSA---SNFAWDLSRTKHGHSSKTSRRSGNTGSDKSRANGDQMF 120

Query: 121 ARHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAANSGQQASSMYRNEASSWLP 180
           +RHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAA+SGQQA+SMY+NEASSWL 
Sbjct: 121 SRHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQANSMYKNEASSWLQ 180

Query: 181 HHSHSQRTPRYPHGITNDINPGVAFLSWSLNDSEQPQLYYDFT 220
           HHSHSQ+TPR+PHGITND+NPGVAFLSWSLND+EQPQLYYDFT
Sbjct: 181 HHSHSQKTPRFPHGITNDLNPGVAFLSWSLNDTEQPQLYYDFT 219

[Close]

BLAST of Moc01g28260 vs. NCBI nr
Match: XP_023518599.1 (GATA transcription factor 18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 382.5 bits (981), Expect = 2.5e-102
Identity = 188/222 (84.68%), Postives = 202/222 (90.99%), Query Frame = 0


Query: 1   MMQRCGSYQCYSAGECSC-GAFYGQQGSYYSMPAYNGNYYDSENYSFESSSP-VDCTLSL 60
           MMQRCGSYQCYSAGECSC  AFYGQQ +++SMPAYN NYY+S++YSF+SSSP VDCTLSL
Sbjct: 1   MMQRCGSYQCYSAGECSCEAAFYGQQTTFFSMPAYNNNYYESQHYSFQSSSPVVDCTLSL 60

Query: 61  GTPSTRMTEYDEKRREEQQSANSISNFGWDLPRGKHGPSSKSGRRGADKSAANGDQMFAR 120
           GTPSTRMTE+DEKRREEQQSA   SNF WDL R KH PSSKSGRRG DKS++N DQM AR
Sbjct: 61  GTPSTRMTEFDEKRREEQQSA---SNFAWDLSRTKHPPSSKSGRRGGDKSSSNADQMLAR 120

Query: 121 HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAANSGQQASSMYRNEASSWLPHH 180
           HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAA+SGQQASSMYRNE SSWL HH
Sbjct: 121 HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQASSMYRNETSSWLQHH 180

Query: 181 SHSQRTPRYPHGITNDINPGVAFLSWSLNDSEQPQLYYDFTS 221
           SHSQRTPR+ HGI ND+NPGVA LSWSLND+EQPQLYYDFTS
Sbjct: 181 SHSQRTPRFTHGIGNDMNPGVAILSWSLNDTEQPQLYYDFTS 219

[Close]

BLAST of Moc01g28260 vs. NCBI nr
Match: XP_022962877.1 (GATA transcription factor 18-like [Cucurbita moschata] >KAG6594828.1 GATA transcription factor 18, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026790.1 GATA transcription factor 18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 377.1 bits (967), Expect = 1.0e-100
Identity = 187/222 (84.23%), Postives = 202/222 (90.99%), Query Frame = 0


Query: 1   MMQRCGSYQCYSAGECSC-GAFYGQQGSYYSMPAYNGNYYDSENYSFESSSP-VDCTLSL 60
           MMQRCGSYQCYSAGECSC  AFYGQQ +++SMPAYN NYY+S++YSF+SSSP VDCTLSL
Sbjct: 1   MMQRCGSYQCYSAGECSCEAAFYGQQTTFFSMPAYN-NYYESQHYSFQSSSPVVDCTLSL 60

Query: 61  GTPSTRMTEYDEKRREEQQSANSISNFGWDLPRGKHGPSSKSGRRGADKSAANGDQMFAR 120
           GTPSTRMTE+DEKRREEQQSA   SNF WDL R KH PSSKSGRRG DKS++N DQMFAR
Sbjct: 61  GTPSTRMTEFDEKRREEQQSA---SNFAWDLSRTKHPPSSKSGRRGGDKSSSNADQMFAR 120

Query: 121 HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAANSGQQASSMYRNEASSWLPHH 180
           HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAA+SGQQASSMYRNE SSWL HH
Sbjct: 121 HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQASSMYRNETSSWLQHH 180

Query: 181 SHSQRTPRYPHGITNDINPGVAFLSWSLNDSEQPQLYYDFTS 221
           SH+QRTPR+ HGI ND+NP VA LSWSLND+EQPQLYYDFTS
Sbjct: 181 SHTQRTPRFAHGIGNDMNPSVAILSWSLNDTEQPQLYYDFTS 218

[Close]

BLAST of Moc01g28260 vs. ExPASy Swiss-Prot
Match: Q8LC79 (GATA transcription factor 18 OS=Arabidopsis thaliana OX=3702 GN=GATA18 PE=1 SV=2)

HSP 1 Score: 144.4 bits (363), Expect = 1.5e-33
Identity = 110/281 (39.15%), Postives = 134/281 (47.69%), Query Frame = 0


Query: 5   CGSYQCYSAGECSCGAFYGQQGSY---YSMPAYNGNYYDSENYSF-ESSSPVDCTLSLGT 64
           CG +  +S   C         GSY   +SM   NG  ++     +  SSS VDCTLSLGT
Sbjct: 18  CGMFHHHSQSCCYNNNNNSNAGSYSMVFSM--QNGGVFEQNGEDYHHSSSLVDCTLSLGT 77

Query: 65  PSTRMTEYDEKRREEQQSANS--ISNFGWDLPRGKHGPSSK------------------S 124
           PSTR+ E DEKRR    S  S  ISNF WDL   K+  S                    S
Sbjct: 78  PSTRLCEEDEKRRRSTSSGASSCISNF-WDLIHTKNNNSKTAPYNNVPSFSANKPSRGCS 137

Query: 125 GRRGADKSAANGDQMFARHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAA--- 184
           G  G       GD + AR CANCDTT+TPLWRNGP GPKSLCNACGIR+KKEER+     
Sbjct: 138 GGGGGGGGGGGGDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRTTAAT 197

Query: 185 ------------------NSG----QQASSMYRNEASSWLPHHSHSQRTP---------- 220
                             NSG      A++   N  + W  HHS +QR P          
Sbjct: 198 GNTVVGAAPVQTDQYGHHNSGYNNYHAATNNNNNNGTPWAHHHS-TQRVPCNYPANEIRF 257

[Close]

BLAST of Moc01g28260 vs. ExPASy Swiss-Prot
Match: Q6QPM2 (GATA transcription factor 19 OS=Arabidopsis thaliana OX=3702 GN=GATA19 PE=1 SV=2)

HSP 1 Score: 132.1 bits (331), Expect = 7.6e-30
Identity = 93/224 (41.52%), Postives = 117/224 (52.23%), Query Frame = 0


Query: 38  YYDSENYSFESSSP---VDCTLSLGTPSTRMTEYDEKRREEQQSANSISNFGWDLPRGKH 97
           ++  EN     SSP   VDCTLSLGTPSTR+   D++RR    ++++I   GWD   G  
Sbjct: 6   FFSPENDVSHHSSPYASVDCTLSLGTPSTRLCNEDDERRFSSHTSDTI---GWDFLNG-- 65

Query: 98  GPSSKSGRRGADKSAANGDQMFARHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEER 157
              SK G  G       G  + AR CANCDTT+TPLWRNGP GPKSLCNACGIR+KKEER
Sbjct: 66  ---SKKGGGG------GGHNLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 125

Query: 158 KAANS-----------------GQQASSMY----RNEASSWLP-HHSH-SQRTPRY---- 217
           +A+ +                   QAS+ Y     N+ +S  P HH H +QR P Y    
Sbjct: 126 RASTARNSTSGGGSTAAGVPTLDHQASANYYYNNNNQYASSSPWHHQHNTQRVPYYSPAN 185

Query: 218 ------------PHGITNDINPGVAFLSWSLNDSEQPQLYYDFT 220
                        H +T D      FLSW LN +++  L +DFT
Sbjct: 186 NEYSYVDDVRVVDHDVTTD-----PFLSWRLNVADRTGLVHDFT 210

[Close]

BLAST of Moc01g28260 vs. ExPASy Swiss-Prot
Match: Q9ZPX0 (GATA transcription factor 20 OS=Arabidopsis thaliana OX=3702 GN=GATA20 PE=2 SV=2)

HSP 1 Score: 104.4 bits (259), Expect = 1.7e-21
Identity = 72/174 (41.38%), Postives = 96/174 (55.17%), Query Frame = 0


Query: 35  NGNYYDSENYSFESSSPVDCTLSLGTPSTRMTEYDEKRREEQQSANSISNFGWDLPRGKH 94
           N + YD  N +F SS+ VDCTLSLGTPSTR+   D+  R    ++N+IS  G     G +
Sbjct: 22  NHHNYDPYN-NFSSSTSVDCTLSLGTPSTRL---DDHHRFSSANSNNIS--GDFYIHGGN 81

Query: 95  GPSSKSGRRGADKSAANGDQMFARHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEER 154
             +S   + G   S         R CA+CDTT+TPLWRNGP GPKSLCNACGIR+KKEER
Sbjct: 82  AKTSSYKKGGVAHS-------LPRRCASCDTTSTPLWRNGPKGPKSLCNACGIRFKKEER 141

Query: 155 KA-------ANSGQQASSM-----YRNEASSWLPHHSH-SQRTPRYPHGITNDI 196
           +A       +  G  A+ +     Y    + +  HH H +  +P + H  T  +
Sbjct: 142 RATARNLTISGGGSSAAEVPVENSYNGGGNYYSHHHHHYASSSPSWAHQNTQRV 182

[Close]

BLAST of Moc01g28260 vs. ExPASy Swiss-Prot
Match: B8AX51 (GATA transcription factor 15 OS=Oryza sativa subsp. indica OX=39946 GN=GATA15 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-19
Identity = 65/134 (48.51%), Postives = 74/134 (55.22%), Query Frame = 0


Query: 45  SFESSSPVDCTLSLGTPSTRMTEYDEKRREEQQSANSISNFGWDLPRGKHGPS------- 104
           S  S+  VDCTLSLGTPS+R       R E   +A   +N G  +P   H PS       
Sbjct: 67  SSSSTGSVDCTLSLGTPSSR-------RAEPVAAAAPAANHGAPVP--AHYPSLSAATVS 126

Query: 105 ----------SKSGR--RGADKSAANG--DQMFARHCANCDTTTTPLWRNGPSGPKSLCN 158
                      + GR   GA K AA    D +  R CANC T +TPLWRNGP GPKSLCN
Sbjct: 127 WDATAESYYCGQQGRPATGAAKCAAGAGHDALLDRRCANCGTASTPLWRNGPRGPKSLCN 186

[Close]

BLAST of Moc01g28260 vs. ExPASy Swiss-Prot
Match: Q6L5E5 (GATA transcription factor 15 OS=Oryza sativa subsp. japonica OX=39947 GN=GATA15 PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-19
Identity = 65/134 (48.51%), Postives = 74/134 (55.22%), Query Frame = 0


Query: 45  SFESSSPVDCTLSLGTPSTRMTEYDEKRREEQQSANSISNFGWDLPRGKHGPS------- 104
           S  S+  VDCTLSLGTPS+R       R E   +A   +N G  +P   H PS       
Sbjct: 67  SSSSTGSVDCTLSLGTPSSR-------RAEPVAAAAPAANHGAPVP--AHYPSLSAATVS 126

Query: 105 ----------SKSGR--RGADKSAANG--DQMFARHCANCDTTTTPLWRNGPSGPKSLCN 158
                      + GR   GA K AA    D +  R CANC T +TPLWRNGP GPKSLCN
Sbjct: 127 WDATAESYYCGQQGRPATGAAKCAAGAGHDALLDRRCANCGTASTPLWRNGPRGPKSLCN 186

[Close]

BLAST of Moc01g28260 vs. ExPASy TrEMBL
Match: A0A6J1IUC2 (GATA transcription factor 18-like OS=Cucurbita maxima OX=3661 GN=LOC111478501 PE=3 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 2.3e-106
Identity = 193/224 (86.16%), Postives = 206/224 (91.96%), Query Frame = 0


Query: 1   MMQRCGSYQCYSAGECSCGAFYGQQGSYYSMPAYNGNYYDSENYSFESSSPVDCTLSLGT 60
           MMQRCGSYQCYSAGECSCGAFYGQQGSY+S PAYN NYY+SE+YSF+SSSPVDCTLSLGT
Sbjct: 1   MMQRCGSYQCYSAGECSCGAFYGQQGSYFSTPAYN-NYYESEHYSFDSSSPVDCTLSLGT 60

Query: 61  PSTRMTEYDEKRREEQQSANSISNFGWDLPRGKHGPSSKSGRR----GADKSAANGDQMF 120
           PSTRMTEYDEKRREEQ SA   SNF WDL R KHG SSK+ RR    G DKS ANGDQMF
Sbjct: 61  PSTRMTEYDEKRREEQHSA---SNFAWDLSRTKHGHSSKTSRRSGNTGGDKSRANGDQMF 120

Query: 121 ARHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAANSGQQASSMYRNEASSWLP 180
           +RHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAA+SGQQA+SMY+NEASSWL 
Sbjct: 121 SRHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQANSMYKNEASSWLQ 180

Query: 181 HHSHSQRTPRYPHGITNDINPGVAFLSWSLNDSEQPQLYYDFTS 221
           HHSHSQ+TPR+PHGITND+NPGVAFLSWSLND+EQPQLYYDFTS
Sbjct: 181 HHSHSQKTPRFPHGITNDLNPGVAFLSWSLNDTEQPQLYYDFTS 220

[Close]

BLAST of Moc01g28260 vs. ExPASy TrEMBL
Match: A0A6J1GDX7 (GATA transcription factor 18-like OS=Cucurbita moschata OX=3662 GN=LOC111453070 PE=3 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.2e-105
Identity = 192/224 (85.71%), Postives = 205/224 (91.52%), Query Frame = 0


Query: 1   MMQRCGSYQCYSAGECSCGAFYGQQGSYYSMPAYNGNYYDSENYSFESSSPVDCTLSLGT 60
           MMQRCGSYQCYSAGECSCGAFY QQGSY+S PAYN NYY+SE+YSF+SSSPVDCTLSLGT
Sbjct: 1   MMQRCGSYQCYSAGECSCGAFYAQQGSYFSTPAYN-NYYESEHYSFDSSSPVDCTLSLGT 60

Query: 61  PSTRMTEYDEKRREEQQSANSISNFGWDLPRGKHGPSSKSGRR----GADKSAANGDQMF 120
           PSTRMTEYDEKRREEQ SA   SNF WDL R KHG SSK+ RR    G DKS ANGDQMF
Sbjct: 61  PSTRMTEYDEKRREEQHSA---SNFAWDLSRTKHGHSSKTSRRSGNTGGDKSRANGDQMF 120

Query: 121 ARHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAANSGQQASSMYRNEASSWLP 180
           +RHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAA+SGQQA+SMY+NEASSWL 
Sbjct: 121 SRHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQANSMYKNEASSWLQ 180

Query: 181 HHSHSQRTPRYPHGITNDINPGVAFLSWSLNDSEQPQLYYDFTS 221
           HHSHSQ+TPR+PHGITND+NPGVAFLSWSLND+EQPQLYYDFTS
Sbjct: 181 HHSHSQKTPRFPHGITNDLNPGVAFLSWSLNDTEQPQLYYDFTS 220

[Close]

BLAST of Moc01g28260 vs. ExPASy TrEMBL
Match: A0A6J1HDS2 (GATA transcription factor 18-like OS=Cucurbita moschata OX=3662 GN=LOC111463241 PE=3 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 5.0e-101
Identity = 187/222 (84.23%), Postives = 202/222 (90.99%), Query Frame = 0


Query: 1   MMQRCGSYQCYSAGECSC-GAFYGQQGSYYSMPAYNGNYYDSENYSFESSSP-VDCTLSL 60
           MMQRCGSYQCYSAGECSC  AFYGQQ +++SMPAYN NYY+S++YSF+SSSP VDCTLSL
Sbjct: 1   MMQRCGSYQCYSAGECSCEAAFYGQQTTFFSMPAYN-NYYESQHYSFQSSSPVVDCTLSL 60

Query: 61  GTPSTRMTEYDEKRREEQQSANSISNFGWDLPRGKHGPSSKSGRRGADKSAANGDQMFAR 120
           GTPSTRMTE+DEKRREEQQSA   SNF WDL R KH PSSKSGRRG DKS++N DQMFAR
Sbjct: 61  GTPSTRMTEFDEKRREEQQSA---SNFAWDLSRTKHPPSSKSGRRGGDKSSSNADQMFAR 120

Query: 121 HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAANSGQQASSMYRNEASSWLPHH 180
           HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAA+SGQQASSMYRNE SSWL HH
Sbjct: 121 HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQASSMYRNETSSWLQHH 180

Query: 181 SHSQRTPRYPHGITNDINPGVAFLSWSLNDSEQPQLYYDFTS 221
           SH+QRTPR+ HGI ND+NP VA LSWSLND+EQPQLYYDFTS
Sbjct: 181 SHTQRTPRFAHGIGNDMNPSVAILSWSLNDTEQPQLYYDFTS 218

[Close]

BLAST of Moc01g28260 vs. ExPASy TrEMBL
Match: A0A6J1KXS3 (GATA transcription factor 18-like OS=Cucurbita maxima OX=3661 GN=LOC111497301 PE=3 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.5e-100
Identity = 186/222 (83.78%), Postives = 201/222 (90.54%), Query Frame = 0


Query: 1   MMQRCGSYQCYSAGECSC-GAFYGQQGSYYSMPAYNGNYYDSENYSFESSSP-VDCTLSL 60
           MMQRCGSYQCYSAGECSC  AFYGQQ +++SMPAYN NYY+S++YSF+SSSP VDCTLSL
Sbjct: 1   MMQRCGSYQCYSAGECSCEAAFYGQQTTFFSMPAYN-NYYESQHYSFQSSSPVVDCTLSL 60

Query: 61  GTPSTRMTEYDEKRREEQQSANSISNFGWDLPRGKHGPSSKSGRRGADKSAANGDQMFAR 120
           GTPSTRMTE+DEKRREEQQSA   SNF WD  R KH PSSKSGRRG DKS++N DQMFAR
Sbjct: 61  GTPSTRMTEFDEKRREEQQSA---SNFAWDFSRTKHPPSSKSGRRGGDKSSSNADQMFAR 120

Query: 121 HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAANSGQQASSMYRNEASSWLPHH 180
           HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAA+SGQQASSMYRNE SSWL HH
Sbjct: 121 HCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQASSMYRNETSSWLQHH 180

Query: 181 SHSQRTPRYPHGITNDINPGVAFLSWSLNDSEQPQLYYDFTS 221
           SH+QRTPR+ HGI ND+NP VA LSWSLND+EQPQLYYDFTS
Sbjct: 181 SHTQRTPRFAHGIGNDMNPSVAILSWSLNDTEQPQLYYDFTS 218

[Close]

BLAST of Moc01g28260 vs. ExPASy TrEMBL
Match: A0A5A7T229 (GATA transcription factor 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002070 PE=3 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 1.9e-100
Identity = 186/226 (82.30%), Postives = 202/226 (89.38%), Query Frame = 0


Query: 1   MMQRCGSYQCYSAGECSCGAFYGQQGSYYSMPAYNGNYYDSENYSFESSSPVDCTLSLGT 60
           MMQRCGSYQCYSAGECSC  +YGQQG+Y+S+P YN NYY++E+YSFESSSPVDCTLSLGT
Sbjct: 1   MMQRCGSYQCYSAGECSCNGYYGQQGTYFSLPTYN-NYYETEHYSFESSSPVDCTLSLGT 60

Query: 61  PSTRMTEYDEKRREEQQSANSISNFGWDLPRGKHGPSSKSGRR-----GADKS-AANGDQ 120
           PSTRMTEYDEKRREEQ SA   SNF WDLPR KH  SSK+ RR     G+DKS A NGDQ
Sbjct: 61  PSTRMTEYDEKRREEQHSA---SNFTWDLPRTKHPHSSKTTRRSSANSGSDKSNANNGDQ 120

Query: 121 MFARHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAANSGQQASSMYRNEASSW 180
           MFARHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAA+SGQQA+SMYRNEASSW
Sbjct: 121 MFARHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAASSGQQANSMYRNEASSW 180

Query: 181 LPHHSHSQRTPRYPHGITNDINPGVAFLSWSLNDSEQPQLYYDFTS 221
           L HHSHSQRTPR+ HGI N++NP VAFL+WSLND+EQPQLYYDFTS
Sbjct: 181 LQHHSHSQRTPRFSHGIANELNPSVAFLTWSLNDTEQPQLYYDFTS 222

[Close]

BLAST of Moc01g28260 vs. TAIR 10
Match: AT3G50870.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 144.4 bits (363), Expect = 1.1e-34
Identity = 110/281 (39.15%), Postives = 134/281 (47.69%), Query Frame = 0


Query: 5   CGSYQCYSAGECSCGAFYGQQGSY---YSMPAYNGNYYDSENYSF-ESSSPVDCTLSLGT 64
           CG +  +S   C         GSY   +SM   NG  ++     +  SSS VDCTLSLGT
Sbjct: 18  CGMFHHHSQSCCYNNNNNSNAGSYSMVFSM--QNGGVFEQNGEDYHHSSSLVDCTLSLGT 77

Query: 65  PSTRMTEYDEKRREEQQSANS--ISNFGWDLPRGKHGPSSK------------------S 124
           PSTR+ E DEKRR    S  S  ISNF WDL   K+  S                    S
Sbjct: 78  PSTRLCEEDEKRRRSTSSGASSCISNF-WDLIHTKNNNSKTAPYNNVPSFSANKPSRGCS 137

Query: 125 GRRGADKSAANGDQMFARHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKAA--- 184
           G  G       GD + AR CANCDTT+TPLWRNGP GPKSLCNACGIR+KKEER+     
Sbjct: 138 GGGGGGGGGGGGDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRTTAAT 197

Query: 185 ------------------NSG----QQASSMYRNEASSWLPHHSHSQRTP---------- 220
                             NSG      A++   N  + W  HHS +QR P          
Sbjct: 198 GNTVVGAAPVQTDQYGHHNSGYNNYHAATNNNNNNGTPWAHHHS-TQRVPCNYPANEIRF 257

[Close]

BLAST of Moc01g28260 vs. TAIR 10
Match: AT4G36620.1 (GATA transcription factor 19 )

HSP 1 Score: 132.1 bits (331), Expect = 5.4e-31
Identity = 93/224 (41.52%), Postives = 117/224 (52.23%), Query Frame = 0


Query: 38  YYDSENYSFESSSP---VDCTLSLGTPSTRMTEYDEKRREEQQSANSISNFGWDLPRGKH 97
           ++  EN     SSP   VDCTLSLGTPSTR+   D++RR    ++++I   GWD   G  
Sbjct: 6   FFSPENDVSHHSSPYASVDCTLSLGTPSTRLCNEDDERRFSSHTSDTI---GWDFLNG-- 65

Query: 98  GPSSKSGRRGADKSAANGDQMFARHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEER 157
              SK G  G       G  + AR CANCDTT+TPLWRNGP GPKSLCNACGIR+KKEER
Sbjct: 66  ---SKKGGGG------GGHNLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 125

Query: 158 KAANS-----------------GQQASSMY----RNEASSWLP-HHSH-SQRTPRY---- 217
           +A+ +                   QAS+ Y     N+ +S  P HH H +QR P Y    
Sbjct: 126 RASTARNSTSGGGSTAAGVPTLDHQASANYYYNNNNQYASSSPWHHQHNTQRVPYYSPAN 185

Query: 218 ------------PHGITNDINPGVAFLSWSLNDSEQPQLYYDFT 220
                        H +T D      FLSW LN +++  L +DFT
Sbjct: 186 NEYSYVDDVRVVDHDVTTD-----PFLSWRLNVADRTGLVHDFT 210

[Close]

BLAST of Moc01g28260 vs. TAIR 10
Match: AT2G18380.1 (GATA transcription factor 20 )

HSP 1 Score: 104.4 bits (259), Expect = 1.2e-22
Identity = 72/174 (41.38%), Postives = 96/174 (55.17%), Query Frame = 0


Query: 35  NGNYYDSENYSFESSSPVDCTLSLGTPSTRMTEYDEKRREEQQSANSISNFGWDLPRGKH 94
           N + YD  N +F SS+ VDCTLSLGTPSTR+   D+  R    ++N+IS  G     G +
Sbjct: 22  NHHNYDPYN-NFSSSTSVDCTLSLGTPSTRL---DDHHRFSSANSNNIS--GDFYIHGGN 81

Query: 95  GPSSKSGRRGADKSAANGDQMFARHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEER 154
             +S   + G   S         R CA+CDTT+TPLWRNGP GPKSLCNACGIR+KKEER
Sbjct: 82  AKTSSYKKGGVAHS-------LPRRCASCDTTSTPLWRNGPKGPKSLCNACGIRFKKEER 141

Query: 155 KA-------ANSGQQASSM-----YRNEASSWLPHHSH-SQRTPRYPHGITNDI 196
           +A       +  G  A+ +     Y    + +  HH H +  +P + H  T  +
Sbjct: 142 RATARNLTISGGGSSAAEVPVENSYNGGGNYYSHHHHHYASSSPSWAHQNTQRV 182

[Close]

BLAST of Moc01g28260 vs. TAIR 10
Match: AT4G26150.1 (cytokinin-responsive gata factor 1 )

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-10
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 118 RHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEERKA 157
           R C++C+TT TPLWR+GP GPKSLCNACGIR +K  R A
Sbjct: 199 RICSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAA 237

[Close]

BLAST of Moc01g28260 vs. TAIR 10
Match: AT5G26930.1 (GATA transcription factor 23 )

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-10
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 118 RHCANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEER 155
           R C+ C TT TP+WR GP+GPKSLCNACGIR++K+ R
Sbjct: 26  RCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRR 62

The following BLAST results are available for this feature:

BLAST of Moc01g28260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022978554.1	4.8e-106	86.16	GATA transcription factor 18-like [Cucurbita maxima]	[more]
XP_022949779.1	2.4e-105	85.71	GATA transcription factor 18-like [Cucurbita moschata] >XP_023544803.1 GATA tran...	[more]
KAG6603971.1	5.3e-105	85.65	Zinc-finger homeodomain protein 6, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023518599.1	2.5e-102	84.68	GATA transcription factor 18-like [Cucurbita pepo subsp. pepo]	[more]
XP_022962877.1	1.0e-100	84.23	GATA transcription factor 18-like [Cucurbita moschata] >KAG6594828.1 GATA transc...	[more]

BLAST of Moc01g28260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LC79	1.5e-33	39.15	GATA transcription factor 18 OS=Arabidopsis thaliana OX=3702 GN=GATA18 PE=1 SV=2	[more]
Q6QPM2	7.6e-30	41.52	GATA transcription factor 19 OS=Arabidopsis thaliana OX=3702 GN=GATA19 PE=1 SV=2	[more]
Q9ZPX0	1.7e-21	41.38	GATA transcription factor 20 OS=Arabidopsis thaliana OX=3702 GN=GATA20 PE=2 SV=2	[more]
B8AX51	1.2e-19	48.51	GATA transcription factor 15 OS=Oryza sativa subsp. indica OX=39946 GN=GATA15 PE...	[more]
Q6L5E5	1.2e-19	48.51	GATA transcription factor 15 OS=Oryza sativa subsp. japonica OX=39947 GN=GATA15 ...	[more]

BLAST of Moc01g28260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IUC2	2.3e-106	86.16	GATA transcription factor 18-like OS=Cucurbita maxima OX=3661 GN=LOC111478501 PE...	[more]
A0A6J1GDX7	1.2e-105	85.71	GATA transcription factor 18-like OS=Cucurbita moschata OX=3662 GN=LOC111453070 ...	[more]
A0A6J1HDS2	5.0e-101	84.23	GATA transcription factor 18-like OS=Cucurbita moschata OX=3662 GN=LOC111463241 ...	[more]
A0A6J1KXS3	1.5e-100	83.78	GATA transcription factor 18-like OS=Cucurbita maxima OX=3661 GN=LOC111497301 PE...	[more]
A0A5A7T229	1.9e-100	82.30	GATA transcription factor 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]

BLAST of Moc01g28260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G50870.1	1.1e-34	39.15	GATA type zinc finger transcription factor family protein	[more]
AT4G36620.1	5.4e-31	41.52	GATA transcription factor 19	[more]
AT2G18380.1	1.2e-22	41.38	GATA transcription factor 20	[more]
AT4G26150.1	1.1e-10	69.23	cytokinin-responsive gata factor 1	[more]
AT5G26930.1	1.1e-10	67.57	GATA transcription factor 23	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000679	Zinc finger, GATA-type	SMART	SM00401	GATA_3	coord: 114..165 e-value: 2.2E-18 score: 77.1
IPR000679	Zinc finger, GATA-type	PFAM	PF00320	GATA	coord: 120..154 e-value: 3.0E-18 score: 65.1
IPR000679	Zinc finger, GATA-type	PROSITE	PS00344	GATA_ZN_FINGER_1	coord: 120..145
IPR000679	Zinc finger, GATA-type	PROSITE	PS50114	GATA_ZN_FINGER_2	coord: 114..150 score: 14.245893
IPR000679	Zinc finger, GATA-type	CDD	cd00202	ZnF_GATA	coord: 120..151 e-value: 3.10687E-14 score: 62.7754
IPR013088	Zinc finger, NHR/GATA-type	GENE3D	3.30.50.10		coord: 116..174 e-value: 2.0E-17 score: 65.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..109
None	No IPR available	PANTHER	PTHR46813:SF5	GATA TRANSCRIPTION FACTOR 18	coord: 1..217
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 117..156
IPR044272	GATA transcription factor 18/19/20	PANTHER	PTHR46813	GATA TRANSCRIPTION FACTOR 18	coord: 1..217

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc01g28260.1	Moc01g28260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009908	flower development
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding