Moc01g19580 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc01g19580
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr1: 13684194 .. 13686511 (-)
RNA-Seq ExpressionMoc01g19580
SyntenyMoc01g19580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGAAAGAGACTCACTCAGATCAGTCAGATACTCAATTTTTGTTTTATTTTATTTTATATTCTAAATGCTTACGTGGAAGGACATGCTCATTGCCATGTATGCATGTGTAAATTATACAAAAATTAGATGTCGTATGTGTTACATGGAAAGATAATTTACAGATATTACAATTGTTTTTTTCTTTGTATCACGGGTATACCTTATGTTTTGTTTTTTATTTTTTTCTTTTTTCGGGGAATCATATAAATTTTTAAAAAATAGGAACTTGTTTTTTAAACAACAAATGTGAAGATGATATTAAGCCTCCAAGCTTTAATATGGAGCAAGAGGTCTTAATTGTTAGTTATTGGGAAACTCGGATTTATAACATCTTCCATATTTGACTTTGGATTTTTTTACGTAAAATCTCACTCCTTATTTTTTACCCCTTCAATTTTTTAACATTGTAAAAAGACGTATTTGTCATATAGTTAATAAATAAGCATTTATGATATATTAAATTTTCACCTAACTATTCACCAAAATCTAAATTGGTCAAATTCTCAATTATCAATATTTTACATATGCTTTGAACTCCTTGAAGTTTTTAAAATCCTCTCAAACAAATATTGTTTAAAATCCTCTCAAACAAATATTGTTCTCCACGTTGTTTGATCATTGTCCCTACATTATCTAATATCATTATCAGCACATTTTCACTTTTGAAAAGTTGGGCATGTGTTACAACCTACAACTTTTTTACTTTAAAATTGCTTAATTTATTTGGAACATTTCCCTTTTTGACGTCTTTGTATTTATTCAATCTTCTGCTGGAACGGCCGTTTTGAGAAAAAAAAAACCAATGTTTAGTAATTGTCTCGGATCTATACCTGTCCGAGCTTGTATGAAGATTTCACCGGGATTGAATATTCTTCAATCCCGGTGCAATTTTGGTTCAGGACATAATCCGGGACATGTCCCAGACTAATCCTGAACCAAGATATGTCCTGAACCAAGATTGGTCAGGAACGGTCCGGGATGAAGGCTTTTTATGTTTTTATTTTATTTTATCCTTCTTCTTTGTTCGATTTTCAAGGTTGCCAAACATCTCTCATCTTTTTTTTTCTTTTATCTCATATAGTTTTATTCTTTTTACAGGATGCCTCGTGTTTTTATAACATTCGGTGGAGATTGGAATGATAGTGAAAAGGATTATGTTAGTGGTCGTATGAGAGGATTGACAATGGATACTACAACCACGTACGAAGAATTTCTAGGTCACGTGTATAGATTGAGTAATATAAACCCTACAGTTTGATATTATAATTAGACGTGTATATCATTTTGAACCCAAAATTTGTGTAATGAAGATAACTAATGACAATAACCTGAGTTTTTTTTTTTAACTGGTGAAGATGTATTTGAATTACCTGTATATATATCTACCGTGTAAAAGCAGGAAATGAAACATATATGTTTTCTTTCCCATATTATATAAGCCAACATGTGTTCCTTATTCCTATGCCCACAATTTGTATTCTCCAATTTCAAAGACCCACATTTCTTATACCCTCATTTCCTTCCTCATCATCGAACCCCTCTTCTTTCCAAACCCCATACCCCTCCTACAGGCATGTAGGTCACGATATATCATCTCTAACACCATTGGATTCAGATGTTGTTCCATGTAATCTGGGAGATGACCAGAGTATGTGATTTGGATGCGTCAGGAGTGTGGAATGATAACCAAGAGGTTGATGATGAAAGTGATTAATCATATGATCCGTTGAGAAAGTTAGAAGAAGGAGACGATGAAGCAGAATATTGGAATGAGGTTGACGATGATGATGCACTTGATGAAGAACCTAATGTGTAATAGGTAAACATTGATATTAGTGGCTAGGTTAATGGTATGCAATTGTCTCACCGAAAACCTTGATGCTGAGAAATTGCAAGTCATGGTCTAGTCTTTTGGGACTAACGAAGTAAAGGAGGGTGAAGTATTTTATTCGAAGAAAAAGTTGATTTTGAAAATGCATTTAGTTGCAATGAGGATGAATTCCCAATTTTGAGTAAAAAAATTGACACCATAACTATATGTACTTCGGTGCATTCAACACTAAAGTGAATTAAGTTTATATAATAAAAAAAATCGTACCTTTGACATTTTCTTAAGGTATCTCTGAATACTTTTCAGGACGACTTCAATGCCACCCACTCTATTATCAAGACTCGTCATGATGGCCTCAATAGCACCAACACAATCATCGAGCCTCCTCAACCGTCTACTGATCCTCTTTTTGAAATTCGTCTTCTTCGTCCTCTTGTCTAG

mRNA sequence

ATGAAGAAGAAAGAGACTCACTCAGATCAGATGCCTCGTGTTTTTATAACATTCGGTGGAGATTGGAATGATAGTGAAAAGGATTATGTTAGTGGTCGTATGAGAGGATTGACAATGGATACTACAACCACGTACGAAGAATTTCTAGGTCACGATATATCATCTCTAACACCATTGGATTCAGATGTTGTTCCATGTAATCTGGGAGATGACCAGAAAGAAGGAGACGATGAAGCAGAATATTGGAATGAGGTTGACGATGATGATGCACTTGATGAAGAACCTAATGACGACTTCAATGCCACCCACTCTATTATCAAGACTCGTCATGATGGCCTCAATAGCACCAACACAATCATCGAGCCTCCTCAACCGTCTACTGATCCTCTTTTTGAAATTCGTCTTCTTCGTCCTCTTGTCTAG

Coding sequence (CDS)

ATGAAGAAGAAAGAGACTCACTCAGATCAGATGCCTCGTGTTTTTATAACATTCGGTGGAGATTGGAATGATAGTGAAAAGGATTATGTTAGTGGTCGTATGAGAGGATTGACAATGGATACTACAACCACGTACGAAGAATTTCTAGGTCACGATATATCATCTCTAACACCATTGGATTCAGATGTTGTTCCATGTAATCTGGGAGATGACCAGAAAGAAGGAGACGATGAAGCAGAATATTGGAATGAGGTTGACGATGATGATGCACTTGATGAAGAACCTAATGACGACTTCAATGCCACCCACTCTATTATCAAGACTCGTCATGATGGCCTCAATAGCACCAACACAATCATCGAGCCTCCTCAACCGTCTACTGATCCTCTTTTTGAAATTCGTCTTCTTCGTCCTCTTGTCTAG

Protein sequence

MKKKETHSDQMPRVFITFGGDWNDSEKDYVSGRMRGLTMDTTTTYEEFLGHDISSLTPLDSDVVPCNLGDDQKEGDDEAEYWNEVDDDDALDEEPNDDFNATHSIIKTRHDGLNSTNTIIEPPQPSTDPLFEIRLLRPLV
Homology
[Close]
BLAST of Moc01g19580 vs. NCBI nr
Match: XP_022154947.1 (uncharacterized protein LOC111022090 [Momordica charantia])

HSP 1 Score: 93.2 bits (230), Expect = 1.9e-15
Identity = 65/162 (40.12%), Postives = 75/162 (46.30%), Query Frame = 0 

Query: 11  MPRVFITFGGDWNDSEKDYVSGRMRGLTMDTTTTYEEF---------------------- 70
           M RVFITFGG+W DSEKDYV GR +GLT+D+TTTY EF                      
Sbjct: 1   MSRVFITFGGEWKDSEKDYVDGRTKGLTVDSTTTYREFQGQNVPSSCMPTTCIPQFQRPT 60

Query: 71  -------------------------LGHDISSLTPLDSDVVPCNLGDDQ----------- 99
                                    LGHDI+ LTPL+SDVVPCNLGDD+           
Sbjct: 61  DPIPSFPSSSSNPSSSQQPHPYYRHLGHDIAGLTPLESDVVPCNLGDDRVCDWNVPGLWN 120

[Close]
BLAST of Moc01g19580 vs. NCBI nr
Match: XP_022155970.1 (uncharacterized protein LOC111022954 [Momordica charantia])

HSP 1 Score: 84.0 bits (206), Expect = 1.2e-12
Identity = 60/151 (39.74%), Postives = 70/151 (46.36%), Query Frame = 0 

Query: 13  RVFITFGGDWNDSEKDYVSGRMRGLTMDTTTT---------------------------- 72
           RVFITFGG+WNDSEKDYV GRMRGLT+D+                               
Sbjct: 37  RVFITFGGEWNDSEKDYVGGRMRGLTVDSQNVSSSCMPIACIPSFQRPTDPIPSFPSSSS 96

Query: 73  ----------YEEFLGHDISSLTPLDSDVVPCNLGDDQ---------------------- 99
                     Y   LGHDI+ LTPL+SDVVPCNLGDD+                      
Sbjct: 97  NPSSSQQPHLYYGHLGHDIAGLTPLESDVVPCNLGDDRVCVWNMPGLWNDNQDESDESYD 156

[Close]
BLAST of Moc01g19580 vs. ExPASy TrEMBL
Match: A0A6J1DN26 (uncharacterized protein LOC111022090 OS=Momordica charantia OX=3673 GN=LOC111022090 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 9.2e-16
Identity = 65/162 (40.12%), Postives = 75/162 (46.30%), Query Frame = 0 

Query: 11  MPRVFITFGGDWNDSEKDYVSGRMRGLTMDTTTTYEEF---------------------- 70
           M RVFITFGG+W DSEKDYV GR +GLT+D+TTTY EF                      
Sbjct: 1   MSRVFITFGGEWKDSEKDYVDGRTKGLTVDSTTTYREFQGQNVPSSCMPTTCIPQFQRPT 60

Query: 71  -------------------------LGHDISSLTPLDSDVVPCNLGDDQ----------- 99
                                    LGHDI+ LTPL+SDVVPCNLGDD+           
Sbjct: 61  DPIPSFPSSSSNPSSSQQPHPYYRHLGHDIAGLTPLESDVVPCNLGDDRVCDWNVPGLWN 120

[Close]
BLAST of Moc01g19580 vs. ExPASy TrEMBL
Match: A0A6J1DP00 (uncharacterized protein LOC111022954 OS=Momordica charantia OX=3673 GN=LOC111022954 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.6e-13
Identity = 60/151 (39.74%), Postives = 70/151 (46.36%), Query Frame = 0 

Query: 13  RVFITFGGDWNDSEKDYVSGRMRGLTMDTTTT---------------------------- 72
           RVFITFGG+WNDSEKDYV GRMRGLT+D+                               
Sbjct: 37  RVFITFGGEWNDSEKDYVGGRMRGLTVDSQNVSSSCMPIACIPSFQRPTDPIPSFPSSSS 96

Query: 73  ----------YEEFLGHDISSLTPLDSDVVPCNLGDDQ---------------------- 99
                     Y   LGHDI+ LTPL+SDVVPCNLGDD+                      
Sbjct: 97  NPSSSQQPHLYYGHLGHDIAGLTPLESDVVPCNLGDDRVCVWNMPGLWNDNQDESDESYD 156

The following BLAST results are available for this feature:
BLAST of Moc01g19580 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022154947.11.9e-1540.12uncharacterized protein LOC111022090 [Momordica charantia][more]
XP_022155970.11.2e-1239.74uncharacterized protein LOC111022954 [Momordica charantia][more]
BLAST of Moc01g19580 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc01g19580 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DN269.2e-1640.12uncharacterized protein LOC111022090 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1DP005.6e-1339.74uncharacterized protein LOC111022954 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
BLAST of Moc01g19580 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc01g19580.1Moc01g19580.1mRNA