Moc01g17180 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc01g17180
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr1: 11561483 .. 11561758 (-)
RNA-Seq ExpressionMoc01g17180
SyntenyMoc01g17180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGGCCTTCAATACAACTTCTTCCCCACTGATCTTCTTTACCCTAAACCTTCACAATCTTCTTCTTCCTCAGAAGCCATGAATAGGGCAAGTGTGAGCTTCAAAATAAGCCATCATAGAGGCAATAATAAAGTAGCTGAAGAAGATGATCATCATCATGGTGCTCAGCCCAAAAGTTTGAGCATTCAAAGGGCAGAAATTAGGCCATTGATTCTCAAGCATAATCAAAGCAAGAATAATCTTCATCTCTCAAAACATTCTACTCATGAATGA

mRNA sequence

ATGGCTGGCCTTCAATACAACTTCTTCCCCACTGATCTTCTTTACCCTAAACCTTCACAATCTTCTTCTTCCTCAGAAGCCATGAATAGGGCAAGTGTGAGCTTCAAAATAAGCCATCATAGAGGCAATAATAAAGTAGCTGAAGAAGATGATCATCATCATGGTGCTCAGCCCAAAAGTTTGAGCATTCAAAGGGCAGAAATTAGGCCATTGATTCTCAAGCATAATCAAAGCAAGAATAATCTTCATCTCTCAAAACATTCTACTCATGAATGA

Coding sequence (CDS)

ATGGCTGGCCTTCAATACAACTTCTTCCCCACTGATCTTCTTTACCCTAAACCTTCACAATCTTCTTCTTCCTCAGAAGCCATGAATAGGGCAAGTGTGAGCTTCAAAATAAGCCATCATAGAGGCAATAATAAAGTAGCTGAAGAAGATGATCATCATCATGGTGCTCAGCCCAAAAGTTTGAGCATTCAAAGGGCAGAAATTAGGCCATTGATTCTCAAGCATAATCAAAGCAAGAATAATCTTCATCTCTCAAAACATTCTACTCATGAATGA

Protein sequence

MAGLQYNFFPTDLLYPKPSQSSSSSEAMNRASVSFKISHHRGNNKVAEEDDHHHGAQPKSLSIQRAEIRPLILKHNQSKNNLHLSKHSTHE
Homology
BLAST of Moc01g17180 vs. NCBI nr
Match: KGN53975.1 (hypothetical protein Csa_018873 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 5.8e-13
Identity = 49/77 (63.64%), Postives = 59/77 (76.62%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKPSQSSSSSEAMNRASVSFKISHHRGNNKVAEEDDHHHGAQPKS 60
          MAGLQYNFFPTDLLYPKPS SSSSSEA+NRASV+FK +  RGN    +++D  HG +PKS
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFK-TPLRGNK--GDQEDIDHGDEPKS 60

Query: 61 --LSIQRAEIRPLILKH 76
            +  Q+ +  PLILKH
Sbjct: 61 RLMISQKVDRSPLILKH 74

BLAST of Moc01g17180 vs. NCBI nr
Match: KAG6603410.1 (hypothetical protein SDJN03_04019, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.0 bits (206), Expect = 7.5e-13
Identity = 57/88 (64.77%), Postives = 63/88 (71.59%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKP-------SQSSSSSEAMNRASVSFKISHHRGNNKVAEEDDHH 60
          MAGLQYNFFPTDLLYPKP       S SSSSS+A+NRASV+FK    RGN    EEDDH 
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSSSSSSSSDAINRASVTFK-KPVRGNQD--EEDDHG 60

Query: 61 HGAQPKSLSIQRAEIRPLILKHNQSKNN 82
           GA  KSLSIQ+ +  PLILKH Q KN+
Sbjct: 61 DGA--KSLSIQKGDRSPLILKH-QVKND 82

BLAST of Moc01g17180 vs. NCBI nr
Match: ADN34001.1 (hypothetical protein [Cucumis melo subsp. melo] >KAA0063834.1 hypothetical protein E6C27_scaffold827G00560 [Cucumis melo var. makuwa] >TYK28218.1 hypothetical protein E5676_scaffold258G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 6.4e-12
Identity = 49/80 (61.25%), Postives = 58/80 (72.50%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKPSQSSSSSEAMNRASVSFKISHHRGNNKVAEEDDHHHGAQPKS 60
          MAGLQYNFFPTDLLYPKPS SSSSSEA+NRASV+FK +     NK  E+ DH    + + 
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTTLR--GNKGEEDIDHGDERKSRL 60

Query: 61 LSIQRAEIRPLILKHNQSKN 81
           S + A+  PLILKH QSK+
Sbjct: 61 FSQKVADRSPLILKH-QSKS 77

BLAST of Moc01g17180 vs. ExPASy TrEMBL
Match: A0A0A0KWJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G218340 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.8e-13
Identity = 49/77 (63.64%), Postives = 59/77 (76.62%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKPSQSSSSSEAMNRASVSFKISHHRGNNKVAEEDDHHHGAQPKS 60
          MAGLQYNFFPTDLLYPKPS SSSSSEA+NRASV+FK +  RGN    +++D  HG +PKS
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFK-TPLRGNK--GDQEDIDHGDEPKS 60

Query: 61 --LSIQRAEIRPLILKH 76
            +  Q+ +  PLILKH
Sbjct: 61 RLMISQKVDRSPLILKH 74

BLAST of Moc01g17180 vs. ExPASy TrEMBL
Match: A0A5A7V9D3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold258G00320 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.1e-12
Identity = 49/80 (61.25%), Postives = 58/80 (72.50%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKPSQSSSSSEAMNRASVSFKISHHRGNNKVAEEDDHHHGAQPKS 60
          MAGLQYNFFPTDLLYPKPS SSSSSEA+NRASV+FK +     NK  E+ DH    + + 
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTTLR--GNKGEEDIDHGDERKSRL 60

Query: 61 LSIQRAEIRPLILKHNQSKN 81
           S + A+  PLILKH QSK+
Sbjct: 61 FSQKVADRSPLILKH-QSKS 77

BLAST of Moc01g17180 vs. ExPASy TrEMBL
Match: E5GC02 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.1e-12
Identity = 49/80 (61.25%), Postives = 58/80 (72.50%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKPSQSSSSSEAMNRASVSFKISHHRGNNKVAEEDDHHHGAQPKS 60
          MAGLQYNFFPTDLLYPKPS SSSSSEA+NRASV+FK +     NK  E+ DH    + + 
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTTLR--GNKGEEDIDHGDERKSRL 60

Query: 61 LSIQRAEIRPLILKHNQSKN 81
           S + A+  PLILKH QSK+
Sbjct: 61 FSQKVADRSPLILKH-QSKS 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN53975.15.8e-1363.64hypothetical protein Csa_018873 [Cucumis sativus][more]
KAG6603410.17.5e-1364.77hypothetical protein SDJN03_04019, partial [Cucurbita argyrosperma subsp. sorori... [more]
ADN34001.16.4e-1261.25hypothetical protein [Cucumis melo subsp. melo] >KAA0063834.1 hypothetical prote... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KWJ22.8e-1363.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G218340 PE=4 SV=1[more]
A0A5A7V9D33.1e-1261.25Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
E5GC023.1e-1261.25Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..58
NoneNo IPR availablePANTHERPTHR38223FAMILY NOT NAMEDcoord: 1..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc01g17180.1Moc01g17180.1mRNA