Moc01g17100 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc01g17100
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Reverse transcriptase
Location	chr1: 11488038 .. 11488736 (-)
RNA-Seq Expression	Moc01g17100
Synteny	Moc01g17100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGAGGAATACCTCCGCCACTTCATTGATGCTCGACAGAAAAACTGGATTCAGATGCTTGATGTAGCCCAATTTTGTTTCAACTGCCAAAAGAGCACGACTACAGGGAAGGCTCCTTTTGAAATAGTATGCGGGCACTTACCTGTGTTACCTCACATCATCGACTATCCTTACGCAGGAAAGAGCCCCCAAGCTTACAACTTCACCAAAGAATGGCGACAATCCACGGATGTTGCCCGAGCATACCTTGAGAAGGCGTCTAAGCACATGAACAAGTGGGCCGACAAGAAGTGCAGACCGTTGGAATTTCAAGTAGGAGATCAAGTGCTCATTAAATTACACCCGAAACAGCTCCGATTCCGGGGTAACACAGATCAACGCCTTATGCGAAAATACGATGGTCCAGTCAACGTCATTCAGAAGGTCGGGAAGACGTCATACAGGGTCCAATTACCCTCATGGATGAAAATCCACCCAGTGATTCACTTGAGCAACTTAAAATCCTATCACCCAAACACCATTGGTCCCGCACGTAATGAAGTGATCCAACCAGTGGTCACCTTGAACAACAAGATGGTAAAAGAAGTTGAAGAAATCTTAGCCGAAAGAACTCGTCGAGTCGGACGACCGAGAAGGGACGTACAGGAATTCTTAGTGAAATGGACAGAGCTTCCAGATGAAGAAATCAGTTGGTAG

mRNA sequence

ATGTTGGAGGAATACCTCCGCCACTTCATTGATGCTCGACAGAAAAACTGGATTCAGATGCTTGATGTAGCCCAATTTTGTTTCAACTGCCAAAAGAGCACGACTACAGGGAAGGCTCCTTTTGAAATAGTATGCGGGCACTTACCTGTGTTACCTCACATCATCGACTATCCTTACGCAGGAAAGAGCCCCCAAGCTTACAACTTCACCAAAGAATGGCGACAATCCACGGATGTTGCCCGAGCATACCTTGAGAAGGCGTCTAAGCACATGAACAAGTGGGCCGACAAGAAGTGCAGACCGTTGGAATTTCAAGTAGGAGATCAAGTGCTCATTAAATTACACCCGAAACAGCTCCGATTCCGGGGTAACACAGATCAACGCCTTATGCGAAAATACGATGGTCCAGTCAACGTCATTCAGAAGGTCGGGAAGACGTCATACAGGGTCCAATTACCCTCATGGATGAAAATCCACCCAGTGATTCACTTGAGCAACTTAAAATCCTATCACCCAAACACCATTGGTCCCGCACGTAATGAAGTGATCCAACCAGTGGTCACCTTGAACAACAAGATGGTAAAAGAAGTTGAAGAAATCTTAGCCGAAAGAACTCGTCGAGTCGGACGACCGAGAAGGGACGTACAGGAATTCTTAGTGAAATGGACAGAGCTTCCAGATGAAGAAATCAGTTGGTAG

Coding sequence (CDS)

ATGTTGGAGGAATACCTCCGCCACTTCATTGATGCTCGACAGAAAAACTGGATTCAGATGCTTGATGTAGCCCAATTTTGTTTCAACTGCCAAAAGAGCACGACTACAGGGAAGGCTCCTTTTGAAATAGTATGCGGGCACTTACCTGTGTTACCTCACATCATCGACTATCCTTACGCAGGAAAGAGCCCCCAAGCTTACAACTTCACCAAAGAATGGCGACAATCCACGGATGTTGCCCGAGCATACCTTGAGAAGGCGTCTAAGCACATGAACAAGTGGGCCGACAAGAAGTGCAGACCGTTGGAATTTCAAGTAGGAGATCAAGTGCTCATTAAATTACACCCGAAACAGCTCCGATTCCGGGGTAACACAGATCAACGCCTTATGCGAAAATACGATGGTCCAGTCAACGTCATTCAGAAGGTCGGGAAGACGTCATACAGGGTCCAATTACCCTCATGGATGAAAATCCACCCAGTGATTCACTTGAGCAACTTAAAATCCTATCACCCAAACACCATTGGTCCCGCACGTAATGAAGTGATCCAACCAGTGGTCACCTTGAACAACAAGATGGTAAAAGAAGTTGAAGAAATCTTAGCCGAAAGAACTCGTCGAGTCGGACGACCGAGAAGGGACGTACAGGAATTCTTAGTGAAATGGACAGAGCTTCCAGATGAAGAAATCAGTTGGTAG

Protein sequence

MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYAGKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCRPLEFQVGDQVLIKLHPKQLRFRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARNEVIQPVVTLNNKMVKEVEEILAERTRRVGRPRRDVQEFLVKWTELPDEEISW

Homology

[Close]

BLAST of Moc01g17100 vs. NCBI nr
Match: TYK01597.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 348.2 bits (892), Expect = 5.5e-92
Identity = 161/232 (69.40%), Postives = 194/232 (83.62%), Query Frame = 0


Query: 1    MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYA 60
            MLEEYLRHF++ARQKNW+Q+LDVAQFCFN Q S++TG++PFEIV G  PVLPH++D+P+A
Sbjct: 1308 MLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLVDHPFA 1367

Query: 61   GKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCRPLEFQVGDQVLIKLHPKQLR 120
            GK+PQA NFTKEW+Q+ D+ARAYLEKASK M KWADKK RPLEF+ GDQVLIKL PKQ+R
Sbjct: 1368 GKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPKQVR 1427

Query: 121  FRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARN 180
            FRG  DQRL+RKY+GPV V++KVG TSYRV LP+WMKI+PVIH+SNLKSYH +T    RN
Sbjct: 1428 FRGRKDQRLVRKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHVSNLKSYHQDTEDLQRN 1487

Query: 181  EVIQPVVTLNNKMVKEVEEILAERTRRVGRPRRDVQEFLVKWTELPDEEISW 233
             V +P++ L+ K  K+VEEILAER RR  RP R + E+LVKW  LP EE SW
Sbjct: 1488 IVTRPIIDLSQKEDKDVEEILAERVRRGRRPTRRIHEYLVKWKNLPVEETSW 1539

[Close]

BLAST of Moc01g17100 vs. NCBI nr
Match: TYK29200.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 346.7 bits (888), Expect = 1.6e-91
Identity = 160/232 (68.97%), Postives = 193/232 (83.19%), Query Frame = 0


Query: 1    MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYA 60
            MLEEYLRHF++ARQKNW+Q+LDVAQFCFN Q S++TG++PFEIV G  PVLPH++D+P+A
Sbjct: 1329 MLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLVDHPFA 1388

Query: 61   GKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCRPLEFQVGDQVLIKLHPKQLR 120
            GK+PQA NFTKEWRQ+ D+ARAYLEKASK M KWADKK RPLEF+ GDQVLIKL P+Q+R
Sbjct: 1389 GKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVR 1448

Query: 121  FRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARN 180
            FRG  DQRL+RKY+GPV V++KVG TSYRV LP+WMKI+PVIH+SNLK YH +T    RN
Sbjct: 1449 FRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRN 1508

Query: 181  EVIQPVVTLNNKMVKEVEEILAERTRRVGRPRRDVQEFLVKWTELPDEEISW 233
             V +P++ L+ K  K+VEEILAER RR  RP R + E+LVKW  LP EE SW
Sbjct: 1509 VVTRPIIDLSQKEDKDVEEILAERVRRGRRPARRIHEYLVKWKNLPVEETSW 1560

[Close]

BLAST of Moc01g17100 vs. NCBI nr
Match: KAA0063412.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 345.9 bits (886), Expect = 2.7e-91
Identity = 160/232 (68.97%), Postives = 192/232 (82.76%), Query Frame = 0


Query: 1    MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYA 60
            MLEEYLRHF++ARQKNW+Q+LDVAQFCFN Q S++TG++PFEIV G  PVLPH++D+P+A
Sbjct: 1329 MLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLVDHPFA 1388

Query: 61   GKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCRPLEFQVGDQVLIKLHPKQLR 120
            GK+PQA NFTKEWRQ+ D+ARAYLEKASK M KWADKK RPLEF+ GDQVLIKL P+Q+R
Sbjct: 1389 GKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVR 1448

Query: 121  FRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARN 180
            FRG  DQRL+RKY+GPV V++KVG TSYRV LP+WMKI+PVIH+SNLK YH +T    RN
Sbjct: 1449 FRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRN 1508

Query: 181  EVIQPVVTLNNKMVKEVEEILAERTRRVGRPRRDVQEFLVKWTELPDEEISW 233
             V  P++ L+ K  K+VEEILAER RR  RP R + E+LVKW  LP EE SW
Sbjct: 1509 VVTPPIIDLSQKEDKDVEEILAERVRRGRRPARRIHEYLVKWKNLPVEETSW 1560

[Close]

BLAST of Moc01g17100 vs. NCBI nr
Match: KAA0032849.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 345.9 bits (886), Expect = 2.7e-91
Identity = 159/232 (68.53%), Postives = 193/232 (83.19%), Query Frame = 0


Query: 1    MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYA 60
            MLEEYLRHF++ARQKNW+Q+LDVAQFCFN Q S++TG++PFEIV G  PVLPH++D+P+A
Sbjct: 1329 MLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLVDHPFA 1388

Query: 61   GKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCRPLEFQVGDQVLIKLHPKQLR 120
            GK+PQA NFTKEWRQ+ D+ARAYLEKASK M KWADKK RPLEF+ GDQVLIKL P+Q+R
Sbjct: 1389 GKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVR 1448

Query: 121  FRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARN 180
            FRG  DQRL+RKY+GPV V++KVG TSYRV LP+WMKI+PVIH+SNLK YH +T    RN
Sbjct: 1449 FRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRN 1508

Query: 181  EVIQPVVTLNNKMVKEVEEILAERTRRVGRPRRDVQEFLVKWTELPDEEISW 233
             V +P++ L+ K  K+VEEILAER R+  RP R + E+LVKW  LP EE SW
Sbjct: 1509 VVTRPIIDLSQKEDKDVEEILAERVRKSRRPARRIHEYLVKWKNLPVEETSW 1560

[Close]

BLAST of Moc01g17100 vs. NCBI nr
Match: KAA0045218.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 345.9 bits (886), Expect = 2.7e-91
Identity = 159/232 (68.53%), Postives = 193/232 (83.19%), Query Frame = 0


Query: 1   MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYA 60
           MLEEYLRHF++ARQKNW+Q+LDVAQFCFN Q S++TG++PFEIV G  PVLPH++D+P+A
Sbjct: 325 MLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLVDHPFA 384

Query: 61  GKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCRPLEFQVGDQVLIKLHPKQLR 120
           GK+PQA NFTKEWRQ+ D+ARAYLEKASK M KWADKK RPLEF+ GDQVLIKL P+Q+R
Sbjct: 385 GKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVR 444

Query: 121 FRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARN 180
           FRG  DQRL+RKY+GPV V++KVG TSYRV LP+WMKI+PVIH+SNLK YH +T    RN
Sbjct: 445 FRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRN 504

Query: 181 EVIQPVVTLNNKMVKEVEEILAERTRRVGRPRRDVQEFLVKWTELPDEEISW 233
            V +P++ L+ K  K+VEEILAER RR  RP R + E+L+KW  LP EE SW
Sbjct: 505 IVTRPIIDLSQKEDKDVEEILAERVRRGRRPARRIHEYLIKWKNLPVEETSW 556

[Close]

BLAST of Moc01g17100 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-14
Identity = 51/171 (29.82%), Postives = 81/171 (47.37%), Query Frame = 0


Query: 2    LEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHI-IDYPYA 61
            L   LR ++    +NW   L   +F +N   + T GK+PFEI  G+LP  P I  D    
Sbjct: 1304 LNRLLRAYVSTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPAIKSDDEVN 1363

Query: 62   GKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCRPLEFQVGDQVLIKLHPKQLR 121
             +S  A    K  +  T   +  LE A   M    +++ +PL   +GD VL+    +   
Sbjct: 1364 ARSFTAVELAKHLKALTIQTKEQLEHAQIEMETNNNQRRKPLLLNIGDHVLVH---RDAY 1423

Query: 122  FRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYH 172
            F+     ++ + Y GP  V++K+   +Y + L S  K H VI++  LKS +
Sbjct: 1424 FKKGAYMKVQQIYVGPFRVVKKINDNAYELDLNSHKKKHRVINVQFLKSLY 1471

[Close]

BLAST of Moc01g17100 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-13
Identity = 56/200 (28.00%), Postives = 87/200 (43.50%), Query Frame = 0


Query: 2    LEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHI-IDYPYA 61
            L   LR +     +NW   L   +F +N   + T GK+PFEI  G+LP  P I  D    
Sbjct: 1278 LNRLLRAYASTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPAIKSDDEVN 1337

Query: 62   GKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCRPLEFQVGDQVLIKLHPKQLR 121
             +S  A    K  +  T   +  LE A   M    +++ +PL   +GD VL+    +   
Sbjct: 1338 ARSFTAVELAKHLKALTIQTKEQLEHAQIEMETNNNQRRKPLLLNIGDHVLVH---RDAY 1397

Query: 122  FRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARN 181
            F+     ++ + Y GP  V++K+   +Y + L S  K H VI++  LK +          
Sbjct: 1398 FKKGAYMKVQQIYVGPFRVVKKINDNAYELDLNSHKKKHRVINVQFLKKF---------- 1457

Query: 182  EVIQPVVTLNNKMVKEVEEI 201
             V +P     NK +   E I
Sbjct: 1458 -VYRPDAYPKNKPISSTERI 1463

[Close]

BLAST of Moc01g17100 vs. ExPASy TrEMBL
Match: A0A5D3BQE4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001890 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 2.6e-92
Identity = 161/232 (69.40%), Postives = 194/232 (83.62%), Query Frame = 0


Query: 1    MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYA 60
            MLEEYLRHF++ARQKNW+Q+LDVAQFCFN Q S++TG++PFEIV G  PVLPH++D+P+A
Sbjct: 1308 MLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLVDHPFA 1367

Query: 61   GKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCRPLEFQVGDQVLIKLHPKQLR 120
            GK+PQA NFTKEW+Q+ D+ARAYLEKASK M KWADKK RPLEF+ GDQVLIKL PKQ+R
Sbjct: 1368 GKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPKQVR 1427

Query: 121  FRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARN 180
            FRG  DQRL+RKY+GPV V++KVG TSYRV LP+WMKI+PVIH+SNLKSYH +T    RN
Sbjct: 1428 FRGRKDQRLVRKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHVSNLKSYHQDTEDLQRN 1487

Query: 181  EVIQPVVTLNNKMVKEVEEILAERTRRVGRPRRDVQEFLVKWTELPDEEISW 233
             V +P++ L+ K  K+VEEILAER RR  RP R + E+LVKW  LP EE SW
Sbjct: 1488 IVTRPIIDLSQKEDKDVEEILAERVRRGRRPTRRIHEYLVKWKNLPVEETSW 1539

[Close]

BLAST of Moc01g17100 vs. ExPASy TrEMBL
Match: A0A5D3E114 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold880G00110 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 7.7e-92
Identity = 160/232 (68.97%), Postives = 193/232 (83.19%), Query Frame = 0


Query: 1    MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYA 60
            MLEEYLRHF++ARQKNW+Q+LDVAQFCFN Q S++TG++PFEIV G  PVLPH++D+P+A
Sbjct: 1329 MLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLVDHPFA 1388

Query: 61   GKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCRPLEFQVGDQVLIKLHPKQLR 120
            GK+PQA NFTKEWRQ+ D+ARAYLEKASK M KWADKK RPLEF+ GDQVLIKL P+Q+R
Sbjct: 1389 GKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVR 1448

Query: 121  FRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARN 180
            FRG  DQRL+RKY+GPV V++KVG TSYRV LP+WMKI+PVIH+SNLK YH +T    RN
Sbjct: 1449 FRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRN 1508

Query: 181  EVIQPVVTLNNKMVKEVEEILAERTRRVGRPRRDVQEFLVKWTELPDEEISW 233
             V +P++ L+ K  K+VEEILAER RR  RP R + E+LVKW  LP EE SW
Sbjct: 1509 VVTRPIIDLSQKEDKDVEEILAERVRRGRRPARRIHEYLVKWKNLPVEETSW 1560

[Close]

BLAST of Moc01g17100 vs. ExPASy TrEMBL
Match: A0A5A7V577 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold508G00480 PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 1.3e-91
Identity = 160/232 (68.97%), Postives = 192/232 (82.76%), Query Frame = 0


Query: 1    MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYA 60
            MLEEYLRHF++ARQKNW+Q+LDVAQFCFN Q S++TG++PFEIV G  PVLPH++D+P+A
Sbjct: 1329 MLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLVDHPFA 1388

Query: 61   GKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCRPLEFQVGDQVLIKLHPKQLR 120
            GK+PQA NFTKEWRQ+ D+ARAYLEKASK M KWADKK RPLEF+ GDQVLIKL P+Q+R
Sbjct: 1389 GKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVR 1448

Query: 121  FRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARN 180
            FRG  DQRL+RKY+GPV V++KVG TSYRV LP+WMKI+PVIH+SNLK YH +T    RN
Sbjct: 1449 FRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRN 1508

Query: 181  EVIQPVVTLNNKMVKEVEEILAERTRRVGRPRRDVQEFLVKWTELPDEEISW 233
             V  P++ L+ K  K+VEEILAER RR  RP R + E+LVKW  LP EE SW
Sbjct: 1509 VVTPPIIDLSQKEDKDVEEILAERVRRGRRPARRIHEYLVKWKNLPVEETSW 1560

[Close]

BLAST of Moc01g17100 vs. ExPASy TrEMBL
Match: A0A5A7SUK4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G00100 PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 1.3e-91
Identity = 159/232 (68.53%), Postives = 193/232 (83.19%), Query Frame = 0


Query: 1    MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYA 60
            MLEEYLRHF++ARQKNW+Q+LDVAQFCFN Q S++TG++PFEIV G  PVLPH++D+P+A
Sbjct: 1329 MLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLVDHPFA 1388

Query: 61   GKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCRPLEFQVGDQVLIKLHPKQLR 120
            GK+PQA NFTKEWRQ+ D+ARAYLEKASK M KWADKK RPLEF+ GDQVLIKL P+Q+R
Sbjct: 1389 GKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVR 1448

Query: 121  FRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARN 180
            FRG  DQRL+RKY+GPV V++KVG TSYRV LP+WMKI+PVIH+SNLK YH +T    RN
Sbjct: 1449 FRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRN 1508

Query: 181  EVIQPVVTLNNKMVKEVEEILAERTRRVGRPRRDVQEFLVKWTELPDEEISW 233
             V +P++ L+ K  K+VEEILAER R+  RP R + E+LVKW  LP EE SW
Sbjct: 1509 VVTRPIIDLSQKEDKDVEEILAERVRKSRRPARRIHEYLVKWKNLPVEETSW 1560

[Close]

BLAST of Moc01g17100 vs. ExPASy TrEMBL
Match: A0A5A7TQR5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold30G002270 PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 1.3e-91
Identity = 159/232 (68.53%), Postives = 193/232 (83.19%), Query Frame = 0


Query: 1   MLEEYLRHFIDARQKNWIQMLDVAQFCFNCQKSTTTGKAPFEIVCGHLPVLPHIIDYPYA 60
           MLEEYLRHF++ARQKNW+Q+LDVAQFCFN Q S++TG++PFEIV G  PVLPH++D+P+A
Sbjct: 325 MLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLVDHPFA 384

Query: 61  GKSPQAYNFTKEWRQSTDVARAYLEKASKHMNKWADKKCRPLEFQVGDQVLIKLHPKQLR 120
           GK+PQA NFTKEWRQ+ D+ARAYLEKASK M KWADKK RPLEF+ GDQVLIKL P+Q+R
Sbjct: 385 GKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVR 444

Query: 121 FRGNTDQRLMRKYDGPVNVIQKVGKTSYRVQLPSWMKIHPVIHLSNLKSYHPNTIGPARN 180
           FRG  DQRL+RKY+GPV V++KVG TSYRV LP+WMKI+PVIH+SNLK YH +T    RN
Sbjct: 445 FRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRN 504

Query: 181 EVIQPVVTLNNKMVKEVEEILAERTRRVGRPRRDVQEFLVKWTELPDEEISW 233
            V +P++ L+ K  K+VEEILAER RR  RP R + E+L+KW  LP EE SW
Sbjct: 505 IVTRPIIDLSQKEDKDVEEILAERVRRGRRPARRIHEYLIKWKNLPVEETSW 556

The following BLAST results are available for this feature:

BLAST of Moc01g17100 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK01597.1	5.5e-92	69.40	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK29200.1	1.6e-91	68.97	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0063412.1	2.7e-91	68.97	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0032849.1	2.7e-91	68.53	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0045218.1	2.7e-91	68.53	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Moc01g17100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7LHG5	1.6e-14	29.82	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q99315	1.1e-13	28.00	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Moc01g17100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BQE4	2.6e-92	69.40	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
A0A5D3E114	7.7e-92	68.97	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold88...	[more]
A0A5A7V577	1.3e-91	68.97	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold50...	[more]
A0A5A7SUK4	1.3e-91	68.53	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81...	[more]
A0A5A7TQR5	1.3e-91	68.53	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold30...	[more]

BLAST of Moc01g17100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..86 e-value: 1.1E-6 score: 30.0
IPR023780	Chromo domain	PFAM	PF00385	Chromo	coord: 196..232 e-value: 1.4E-6 score: 28.1
None	No IPR available	GENE3D	2.40.50.40		coord: 187..232 e-value: 2.3E-6 score: 29.0
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 1..175
None	No IPR available	PANTHER	PTHR46148:SF35	ZINC FINGER, CCHC-TYPE-RELATED	coord: 1..175
IPR000953	Chromo/chromo shadow domain	PROSITE	PS50013	CHROMO_2	coord: 195..232 score: 10.5846
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 156..232

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc01g17100.1	Moc01g17100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding