Moc01g16780 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc01g16780
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionExocyst complex component sec3A
Locationchr1: 11202872 .. 11207261 (+)
RNA-Seq ExpressionMoc01g16780
SyntenyMoc01g16780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCTGTAGGATTCGGCGTTCGGGAGCGAGTCGACGGCGTCTTGAATGGCCGACGACATCAGCGAGTCGTGGATGACGACAAGTCGTTTCGTTTTTGGGGAAAGGGAGCGGAGGAAGGCGGCGAGAGGGCGGCGGAGGTACGAGGCCGCGGCGCGGAAGGTTGGGATCAGGTGGGAGGGGAACTTGTGGGCGGCAGCGGGGTCCGGCGCAGGGCACGGGAAAGGGGGGACGTCGTCAAAGTCGTGGAAATGGATGAGGTCGGAGCTCCGGCCGCCGTCAGCGGCGGCGACGGCGCCGGAGATGCAGCGGACCTGGGCTTGGCGGTTGTGGGTGGCGGCACCGACGAAGTGGATGGGGATGTGGAAGGCGGAGAGGAGGCGTGCGAGGTGGAGGAGCTGGTTCAAATGGCCTTGCGCCGGGAGCGGGACCATGACGACCAGCACCGGAGGGTGGTCGTAGTTGTTCCCGGCGGTGACAGCGGCGGCAATGGCATGGTTTTGGTTACTCATTTGATGATAGCTTGGAATCCAAAGTACAAGCTGTTTTGTATTTTCCTTTGCAAGTTTCAACTTTCAACTTTAACCCATTTTTATATGCAAGAAGAAGAAGAAGAAAAAGAAAGAAAAAAAAAAGGAAAAAAATATAATTTTGCCCTGTCCCACAGATTTTCATGTGTTCCAATTCCATATGGTGCATAATTTCTATCAATTATTCAAAAAGGAAAAGAAAAGAATGAAATTAGCCTCTCAAGTGGTATAATTTTATTTATATTATTATATTTAATAGATTAGTGGCTCTTAATGGTACAATGGAACTTCTGTTAATTTTTTAATGTGTCGTATTTATATGAGTTTATTTATATTGCATTTAATTAATAACTAACCTTTTTAACTAATAATAGAAAAATATTTAAGTCCTGAATTTGTTTCAGAGAAAAGTAATGAACTGTCTATTTTTCAACGGTGATACAAATATGATCTCAATAGTCAAGAACCTAAGTATTTTTCAATATATGGCCACATCACAAAGTTAGTAGGTATGAGTTTCTTAGTAGTATGTTTGGTAAGTATTATTTTTTTTTTATAAGGAGAAAATTTTATGTAACTGGGAGAATTTTAAATAATAATAAGAACAACAACAGCATTCCATTTTAAAGTAAAATAAAAATATCAAAAAAACAAAAAAAATTAGTCACCAACAAAATCATAACGTATTAATTAGTAAAATTTAAATCGGAGGTTCAAATTTTCGTCTAGTTGTTTTTTTAATTAAAAAAATAAAATCAAAAGATGTCAAAATAATTTACATTGAATAACTCTTGCCAAAATAAACTATAAAGGTGAGGATCATAACAATAATATTTGGGTGCTGACTGCCTTGTTCATCATCTCAAAATTTGAGAGTTCTCATATTTTTCTTTTATATATATACCATTATTCATTTCCCTCTCTAATTTAGTAAAAAATTTTAATGGTGATTGGCAAGAGATAAGTGCTGATGATTATTTGGATCAAAATAGTTATTACTTTTAAAATTCTAAAGTAGACCTTTTTTTTTTTTAAAATTCTGAAACCAGAATAGATATTTTGAAAATTTAAAAACTAAAATGGATGTGGTATATTTAAACTTTAAACTTTAATGGATTACTTGAGTGTGTGTTCATAGAATATGAAGTTTCTAAATATAAATTAATTAGTGAAATCAAATATAGAAAATGGGACTGGTTAGAGACTAGCATGATTCTAAATATCTATCAATATGTTACATTTCAATCGACATGTCAATGTTTTCGTGAGTTCGACATCGATATGAGGGATAGATCGACATTTCCATCATAGTACGGACAAAATATGAAAAATTTCAACAAAAATGCCACTAATATATACATAATACCAATATTAATTATTTTTTTAACTTATTTAGAAATATGAAAATGTTTATTTATTAATTTAAATATTTTTTCATGATTTTTTAATTTTTATAATTTTTACAGAAATATCCATCGATATCGACATTTTATCGATATTTCCATGAAATTGAGATCTCGACGTTTCCATGAACATCGATATTTAAAACCTTGGAGAGTTTTGTTTTGAGTTTTTTTTTTCTTTTCTTTTCTAGATGATAAAACTAAGTCCTTTTGGAATCTTAGCCAAAGTTTCTTTAAAAAGTTCTAAATACTTTTTGTAATTCTTAAAATTTTATTAGTATTTTAAAATTAATACTTTCTTAATTCTCAAAAATGGACTAAAATTAAAAAATAAATAAATTTATTTATCAAGTCTCAATTCATTTATGATTTTCAATTTCAAGAAGCCAGTATTCTTTTCCTATGGAATGAAAGTTCTAATTTGTTGGATTTTTTTCCCTTTAATCTCTAATTAATTAATTACTTTGATGATAACAAAACGCACACGAACCTAAGACCTCATGCTAAAATATAAAAGTTACAAAAAGAAAATATTTTACTTATATTTGCATGTGGTTTTTTCCATTTTAAATGACCTCAAGCAAACTTATATATATATAGATAGATCCATCATATACATATATATAACTGCAAACTACTCAACTATTCTCCCACCGGTGAATCATATACTCAAAATTAAATGCAATGTAAATTAACACTGCGAAATGTTACCATTATGCTATACTAAAAAAGAATTATAATATTTTTTAAAATACATATTAAATTTAGAATATGGAGTGAAAATGTTCTAATTTCAAGATATCATAGTTTATTTTAGCTTCTTTTAATGCAATATGTACCGATGAGAATTGGAATTCATGGCCCTTTGATTGTAAATATGTGTCTTAATTAACTTATGTTAATATTGATTTTTGTTGTTTTAATTATATAATATAATTAGTTTTTAATGTTCAATGCATTATCAATGAAGTTGTGATACTCCTACAAAATATTGTATTAATTTTGTGATATTTATTTGTATACCATCTCAATATTACCAAGTTATCGTACTTTTGTCTTTACAATTTGTTATATATATTGAGATTTTTTTTGTTGAGAAGGTTATATATCGAGATTTGATATCTCTCTAATTCTGTAAACATACAAATATAATTAGTAAAACAAAAATGATGGATTATATATCATAAATTTGTTATAATTAAAGTATCATAAACTAATTCAAACAATTTCCAAATATCTATACTTTTTACGGTTTTTTTAATTTCCTTGAATATCAATATTTTCATAGAGATATTAGTTGTATTTAATTTTTAGATATATAATACATTAAAATGTAAGTCATAACCTACTTAACCAACGATTAGAGTCTTATTTGTTAATGCAATAATTTTTCTTAATCAATTTTTACGATTTTCATTATTATTTTAAAAGGATTTGTTGACATAAATATATTTTCATAAAATCAGATGAGGTGTATATCGATTAGTCAAGTTAGCTTTTAGGCCAAAATCCCAACCGATCGACATATAATTTAGGGGTGTTCAAAAATCCGGCAATTCGACGAACCTGATGAACCCAACCCAACCCATGGGTTGGATTAGATGAAGCTTTTCGTTTGGGTGGGGTTGGGTCTTGGGTTCAACCTTTAAAAAATCAGGTCAACTCAACCCAACTCGAATTTATGCATATATATGTATATTTTAAATTATATATACACACACATGCATACAATGTTCATTTAGTTTTAATCCTAGCCCTTCATTTAAGTTTTCCTATTATCTTCCATTTTGTATATTAATCTCATATGTCCATTTAGTTTTAATCCTAACTCCTTGTGGGCGCGATAATTAAAAAAAAAAAAAAAGAATACAACCTAACAACTCAACCCAACCCAACTATTAGACAACTATTAGGGGTGTTCACAAGTTGGGTTGAGTTATGAGGGGTTTTAGGATCAATCCGAATTTTTGGGTTTGCCATATATATAGGAACCGTGGAGTTTGAACAAAAATTCGGATTAATCCTAAAACCCTCATAACCCGACCCAGCATGTGAACACCCCTAATGGTTGGTTTCTAAAAATGGAAACTGACTGATCGAAACGATGAAGCTTCTATCGACATACTTTTTGTTGGTTTGGTCGCTCGATTTTCGATCGACCTTTTTTTTCTTTTTTCTTTTTACGTTTTGTGTTTTCGACAAACCTTAGAAATTGAGTCCAACTTGAAACGGGGGTATTAGGGGCAAGTTTGTGGTGAATCTCAGCCGTAGGGGTTGTGGGGGACGGGTTTACGACGGAGCTGAACGGCAGCCTTGTGGGGTTGGGTTTGTGGCGGATTCGAGTGAGGCAAGTTGTGGGGGGTGAGGTTGAGTCTTGGCAAAAACCGAGTGGCAGGGGTTGGGAGCAGCAAAAATCGAACGACATGAGGGTTGGGGTTGGACAACAAGGTGGCTAG

mRNA sequence

ATGGAAGCTGTAGGATTCGGCGTTCGGGAGCGAGTCGACGGCGTCTTGAATGGCCGACGACATCAGCGAGTCGTGGATGACGACAAGTCGTTTCGTTTTTGGGGAAAGGGAGCGGAGGAAGGCGGCGAGAGGGCGGCGGAGGTACGAGGCCGCGGCGCGGAAGGTTGGGATCAGGTGGGAGGGGAACTTGTGGGCGGCAGCGGGGTCCGGCGCAGGGCACGGGAAAGGGGGGACGTCGTCAAAGTCGTGGAAATGGATGAGGTCGGAGCTCCGGCCGCCGTCAGCGGCGGCGACGGCGCCGGAGATGCAGCGGACCTGGGCTTGGCGGTTGTGGGTGGCGGCACCGACGAAGTGGATGGGGATGTGGAAGGCGGAGAGGAGGCGTGCGAGGTGGAGGAGCTGGTTCAAATGGCCTTGCGCCGGGAGCGGGACCATGACGACCAGCACCGGAGGGTGGTCGTAGTTGTTCCCGGCGGTGACAGCGGCGGCAATGGCATGGTTTTGGTTACTCATTTGATGATAGCTTGGAATCCAAAGTACAAGCTGTTTTCCGTAGGGGTTGTGGGGGACGGGTTTACGACGGAGCTGAACGGCAGCCTTGTGGGGTTGGGTTTGTGGCGGATTCGAGTGAGGCAAGTTGTGGGGGGTGAGGTTGAGTCTTGGCAAAAACCGAGTGGCAGGGGTTGGGAGCAGCAAAAATCGAACGACATGAGGGTTGGGGTTGGACAACAAGGTGGCTAG

Coding sequence (CDS)

ATGGAAGCTGTAGGATTCGGCGTTCGGGAGCGAGTCGACGGCGTCTTGAATGGCCGACGACATCAGCGAGTCGTGGATGACGACAAGTCGTTTCGTTTTTGGGGAAAGGGAGCGGAGGAAGGCGGCGAGAGGGCGGCGGAGGTACGAGGCCGCGGCGCGGAAGGTTGGGATCAGGTGGGAGGGGAACTTGTGGGCGGCAGCGGGGTCCGGCGCAGGGCACGGGAAAGGGGGGACGTCGTCAAAGTCGTGGAAATGGATGAGGTCGGAGCTCCGGCCGCCGTCAGCGGCGGCGACGGCGCCGGAGATGCAGCGGACCTGGGCTTGGCGGTTGTGGGTGGCGGCACCGACGAAGTGGATGGGGATGTGGAAGGCGGAGAGGAGGCGTGCGAGGTGGAGGAGCTGGTTCAAATGGCCTTGCGCCGGGAGCGGGACCATGACGACCAGCACCGGAGGGTGGTCGTAGTTGTTCCCGGCGGTGACAGCGGCGGCAATGGCATGGTTTTGGTTACTCATTTGATGATAGCTTGGAATCCAAAGTACAAGCTGTTTTCCGTAGGGGTTGTGGGGGACGGGTTTACGACGGAGCTGAACGGCAGCCTTGTGGGGTTGGGTTTGTGGCGGATTCGAGTGAGGCAAGTTGTGGGGGGTGAGGTTGAGTCTTGGCAAAAACCGAGTGGCAGGGGTTGGGAGCAGCAAAAATCGAACGACATGAGGGTTGGGGTTGGACAACAAGGTGGCTAG

Protein sequence

MEAVGFGVRERVDGVLNGRRHQRVVDDDKSFRFWGKGAEEGGERAAEVRGRGAEGWDQVGGELVGGSGVRRRARERGDVVKVVEMDEVGAPAAVSGGDGAGDAADLGLAVVGGGTDEVDGDVEGGEEACEVEELVQMALRRERDHDDQHRRVVVVVPGGDSGGNGMVLVTHLMIAWNPKYKLFSVGVVGDGFTTELNGSLVGLGLWRIRVRQVVGGEVESWQKPSGRGWEQQKSNDMRVGVGQQGG
Homology
[Close]
BLAST of Moc01g16780 vs. NCBI nr
Match: KQK14828.1 (hypothetical protein BRADI_1g18822v3 [Brachypodium distachyon])

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-06
Identity = 73/175 (41.71%), Postives = 86/175 (49.14%), Query Frame = 0 

Query: 2   EAVGFGVRERVDGVLNGRRHQRVVDDDKSFRFWGKGAEEGGERAAEVRGRGAEGWDQ--- 61
           E +  G  +R+ G    RRH  V  DD + R  G+  +E GER+A   G GAEG ++   
Sbjct: 303 ERLAVGQLDRLGG--RERRHPVVEHDDAAVR-GGQLGQERGERSA---GAGAEGLEERLH 362

Query: 62  VGGELVGGSGVRRRARERGDVVKVVEMDEVGAPAAVSGGD----GAGDAADLGLAVVGGG 121
           V  E    SGVR RAR R D          G  A   GG+         A  GLA V   
Sbjct: 363 VRRERGRRSGVRVRARVRRD----------GEGAEADGGEVVVVAPAVEARAGLAEVRLR 422

Query: 122 TDEVDGDVEGGEEACEVEELVQMALRRERDHDDQHRRVVVVVPGG----DSGGNG 166
             EVDGD   GEE  EVEELVQ+ALRRERD  D+ RR     PGG    + GG G
Sbjct: 423 RGEVDGDPARGEEEGEVEELVQVALRRERDRHDRDRRRFRRHPGGRFRSEGGGGG 461

[Close]
BLAST of Moc01g16780 vs. NCBI nr
Match: GER25847.1 (exocyst complex component sec3A, partial [Striga asiatica])

HSP 1 Score: 59.7 bits (143), Expect = 4.1e-05
Identity = 62/150 (41.33%), Postives = 79/150 (52.67%), Query Frame = 0 

Query: 1   MEAVGFGVRERVDGVLNGRRHQRVVDDDKSFRFWGKGAEEGGERAAEVRGRGAEGWDQVG 60
           +E+VG  V    D VL+G  ++ VV++D  F       +EGG RAAE    G  G  +V 
Sbjct: 45  IESVGLDVGNG-DRVLDGLGNEAVVNEDDFFGLGRHVLDEGGNRAAE-GNVGLHGRSKV- 104

Query: 61  GELVGGSGVRRRAR---ERGDVVKVVEMDEVGAPAAVSGGDGAGDAADLGLAVVGGGTDE 120
              VGGS VR R R     G   +VVEMD V     V          +  LAVVGGG +E
Sbjct: 105 ---VGGS-VRARIRVGCGDGGSGEVVEMDRVRVRVRV--------VTEFNLAVVGGGAEE 164

Query: 121 VDGD-VEGGEEACEVEELVQMALRRERDHD 147
           VDG+   GG+EA E EELV++AL  +  HD
Sbjct: 165 VDGEGGGGGDEAGEAEELVEVALGGDGQHD 179

[Close]
BLAST of Moc01g16780 vs. NCBI nr
Match: KAF7145795.1 (hypothetical protein RHSIM_Rhsim04G0104100 [Rhododendron simsii])

HSP 1 Score: 59.3 bits (142), Expect = 5.4e-05
Identity = 58/134 (43.28%), Postives = 73/134 (54.48%), Query Frame = 0 

Query: 15  VLNGRRHQRVVDDDKSFRFWGKGAEEGGERAAEVRGRGAEGWDQVGGELVGGSGVRRRAR 74
           VL+   H+ VVD D      G  AEE     A+++G G EG  ++G E VGG  VRRR  
Sbjct: 20  VLDHISHEGVVDYDNPSGGGGDLAEELRHGVAQLQG-GFEGGLEMGREFVGGVRVRRRGE 79

Query: 75  ER--GDVVKVVEMDEVGAPAAVSGGDGAGDAADLGLAVVGGGTDEVDGD-VEGGEEACEV 134
           ER  G+ V+     +VG         G G   +  LA VGGG  EVDGD V GG+EA EV
Sbjct: 80  ERRGGEFVEA----DVGVLEV-----GLGVETEFDLAEVGGGGGEVDGDAVGGGDEAGEV 139

Query: 135 EELVQMALRRERDH 146
           EELV+MA+  +  H
Sbjct: 140 EELVEMAMAWDHWH 143

[Close]
BLAST of Moc01g16780 vs. NCBI nr
Match: KAF5785934.1 (hypothetical protein HanXRQr2_Chr10g0434661 [Helianthus annuus])

HSP 1 Score: 58.5 bits (140), Expect = 9.2e-05
Identity = 32/45 (71.11%), Postives = 34/45 (75.56%), Query Frame = 0 

Query: 105 DLGLAVVGGGTDEVDGDVEGGEEACEVEELVQMALRRERDHDDQH 150
           D  LAVVGGG DEVDGDV GG+EA EVEELV+MAL  ER H   H
Sbjct: 16  DADLAVVGGGGDEVDGDVVGGDEAREVEELVEMALCEERHHHHHH 60

[Close]
BLAST of Moc01g16780 vs. NCBI nr
Match: KAF5794595.1 (hypothetical protein HanXRQr2_Chr08g0329831 [Helianthus annuus])

HSP 1 Score: 57.4 bits (137), Expect = 2.0e-04
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 0 

Query: 106 LGLAVVGGGTDEVDGDVEGGEEACEVEELVQMALRRERDHDDQHRRVVVVV 157
           LGLAVVGGG D+VD DV  G+EA EVEELV+MAL R+RDH   HR V ++V
Sbjct: 11  LGLAVVGGGGDDVDWDVVAGDEAGEVEELVEMALCRKRDH--HHRDVGLLV 59

[Close]
BLAST of Moc01g16780 vs. ExPASy TrEMBL
Match: A0A0Q3JS05 (Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_1g18822v3 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-06
Identity = 73/175 (41.71%), Postives = 86/175 (49.14%), Query Frame = 0 

Query: 2   EAVGFGVRERVDGVLNGRRHQRVVDDDKSFRFWGKGAEEGGERAAEVRGRGAEGWDQ--- 61
           E +  G  +R+ G    RRH  V  DD + R  G+  +E GER+A   G GAEG ++   
Sbjct: 303 ERLAVGQLDRLGG--RERRHPVVEHDDAAVR-GGQLGQERGERSA---GAGAEGLEERLH 362

Query: 62  VGGELVGGSGVRRRARERGDVVKVVEMDEVGAPAAVSGGD----GAGDAADLGLAVVGGG 121
           V  E    SGVR RAR R D          G  A   GG+         A  GLA V   
Sbjct: 363 VRRERGRRSGVRVRARVRRD----------GEGAEADGGEVVVVAPAVEARAGLAEVRLR 422

Query: 122 TDEVDGDVEGGEEACEVEELVQMALRRERDHDDQHRRVVVVVPGG----DSGGNG 166
             EVDGD   GEE  EVEELVQ+ALRRERD  D+ RR     PGG    + GG G
Sbjct: 423 RGEVDGDPARGEEEGEVEELVQVALRRERDRHDRDRRRFRRHPGGRFRSEGGGGG 461

[Close]
BLAST of Moc01g16780 vs. ExPASy TrEMBL
Match: A0A5A7NZP4 (Exocyst complex component sec3A (Fragment) OS=Striga asiatica OX=4170 GN=STAS_01455 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-05
Identity = 62/150 (41.33%), Postives = 79/150 (52.67%), Query Frame = 0 

Query: 1   MEAVGFGVRERVDGVLNGRRHQRVVDDDKSFRFWGKGAEEGGERAAEVRGRGAEGWDQVG 60
           +E+VG  V    D VL+G  ++ VV++D  F       +EGG RAAE    G  G  +V 
Sbjct: 45  IESVGLDVGNG-DRVLDGLGNEAVVNEDDFFGLGRHVLDEGGNRAAE-GNVGLHGRSKV- 104

Query: 61  GELVGGSGVRRRAR---ERGDVVKVVEMDEVGAPAAVSGGDGAGDAADLGLAVVGGGTDE 120
              VGGS VR R R     G   +VVEMD V     V          +  LAVVGGG +E
Sbjct: 105 ---VGGS-VRARIRVGCGDGGSGEVVEMDRVRVRVRV--------VTEFNLAVVGGGAEE 164

Query: 121 VDGD-VEGGEEACEVEELVQMALRRERDHD 147
           VDG+   GG+EA E EELV++AL  +  HD
Sbjct: 165 VDGEGGGGGDEAGEAEELVEVALGGDGQHD 179

The following BLAST results are available for this feature:
BLAST of Moc01g16780 vs. NCBI nr
Match NameE-valueIdentityDescription
KQK14828.12.2e-0641.71hypothetical protein BRADI_1g18822v3 [Brachypodium distachyon][more]
GER25847.14.1e-0541.33exocyst complex component sec3A, partial [Striga asiatica][more]
KAF7145795.15.4e-0543.28hypothetical protein RHSIM_Rhsim04G0104100 [Rhododendron simsii][more]
KAF5785934.19.2e-0571.11hypothetical protein HanXRQr2_Chr10g0434661 [Helianthus annuus][more]
KAF5794595.12.0e-0466.67hypothetical protein HanXRQr2_Chr08g0329831 [Helianthus annuus][more]
BLAST of Moc01g16780 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc01g16780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0Q3JS051.1e-0641.71Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_1g18822v3 P... [more]
A0A5A7NZP42.0e-0541.33Exocyst complex component sec3A (Fragment) OS=Striga asiatica OX=4170 GN=STAS_01... [more]
BLAST of Moc01g16780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 225..246
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 221..246

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc01g16780.1Moc01g16780.1mRNA