Moc01g16610 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc01g16610
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	exosome complex component RRP43
Location	chr1: 10870087 .. 10882040 (-)
RNA-Seq Expression	Moc01g16610
Synteny	Moc01g16610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTGCCGAATGCTGCTTCTGGGGATTTGTCGTCGGAGATGGAGGTTGATGCTTTTAGACGACTCTTCCCACTTCAGTTTTATGAGCGTCATTTCGCTGAATCGATACGTCCTGATGGAAGAGCACTGGGGAAAGCTAGAGATACAACCATTGCTCTTGGTTAGTCTGTAACCTTTGATTTTCAGAAAATTGCTATTACGATTATTTCCAACTTTTTTTTTATCATCATCGTGTTTGCTTGAATGATTTTCATACTCAAAACTGAATTTGGATATCGTTTTTGTTTATTAAGGGCCTGTATCATCTGCAAATGGTTCTGCCCTGGCTAAGATTGGTTCTACGGTAAGTGCCTCCACGCACGTCTTTATGCTAGAGCAGCTCATGCCTGTATGAGAATGATTAGATTTTGTGATAGTTTGTTCTATATCATTTCAGACAATGTTGGCTGCTATTAAAATGGAAGTAATGACGCCTTCCATAGAGTCACCGGATGAGGGTTGCATAGGTTGGCCATTGTCAGCTTCTAGATATTTTTGGTCCTTGTTCTTCATTATCTTTACAATAACATCCTATATATCTAGGTGATATTGGGTCTGTTTTTTTTTTTCCAGCTATTGATTTCCATATGCCCCCAATATGCTCTCCGATTGTTAGGCCTGGGAGACCAGCTGAAGCCGCACCTGTGATTTCAAAGCAGTTATCTGACACCATTTCAAGGTACAGTTTCACCTTTTTTGCAATCTTACGTGATGATATTCTTTTAGTAAGTGTGAATGACAATCAAACTTTAGAAAACCTTTTGAATACTATTGAAATGTTTGGGATGGCTTTGGGATTAAAGGTTAACCTCCTTAGCGGTTGGTATTCATCGCAATGAGAATAGAATCCTAGAGGTATCTAACTTGTTTTCTTGTGGAGTGGGCTGTCTTGTACCTGACATGGGAATGCCTCTGGGGAAATATGAACTTTCAAGACTTTTGGGATTCGGTCATAGATAAATTAAGGAGAAATACTTCTCTCTTGGGGAGTAGCATTATCTCTTGTTCAATTAGTACTCTTCTCCGTTCCCTTATATCATCTCTCTTCAAAATGACTAGCAAGATTTGTTAATATTATAGAAAAGATCATTGGAGACTTTATTTGGAATTGGATAGCAATAATGGGGAAGGCAACCATTTGGTGAATTGGAAAACAACTTGCCTCCCCTTTGCTATTGGTGGCTTGGGGATTGGAAACTTAAGAAGTGGAAATATTGCTCCCATGACTAAATGGCTCGAGAGACTTCCTAAACAAAGGGAGACTTACAAGAAAACCCCAGGGGACCAAAAACGACCGTCCCTCGCTAGAACCATAAAAATTGAATAAAGCAAAGTAAAGACGTGATATCAACAACATACTTATCAAAGAACGACAAAAATCCAAGTTAAGTGAAGGGCACCCAAGAGAGAGAAGTGATTGAGGCCACTGAACAACCCTTCATAGAAGACAAATGGCTAACCAAGGGAAAAGAGAGGCAAGAGGGGAATCTCCCAACCAATAGTACTCCCAACCTAGCTTTTCTAGACTAAAAAAACTTTTTCTCTCATGCTGTTTACAAAATTAGCAATGACAAATTTATGCGTTTTAGGGAGGGAAAATGGCATAATAGGGATCCCCTTCGATTGACCTTTTCTTGCCTTTATGCACTGGCTAACTGGCTAACAGCAAAGACATGAATCTTTTGCAAGGCTAGAACGGTGAGCAAAACTCTTGGTTACTTAACTTTAGAAAGAATTTCAGAGACATTGAGAGTGGATCTCCCTGATGGATGTTTTGAATTATGTGGTTCTTAGGGAGGAGGATGATATTCATTATTTTGCAATGGTCTCGGTCAAGAAACTTCACTTTTAGTTTTCTTCTATTTATTTAGTTATAGTATGGGTATGGGGAGCCCACTCCTTGTGTTATGCTCATCCCCCACTAACCCAGAACAAGGATGTTAAATTATCAAGTCTTCAAACAGGGTGCTTGAAACTAGGATGTCTGGGATATCTCCAAACCTCCCAAACTCTTATAACTATTGGATCCTTGGAAATTTCAAGCAACTTCACTATCAAATCCTTCAATAAATTAGCCAGTGGCTAGGAATCCCAAAGTAAGACTACAACAAACTGATTTGGAAGAGCAGAAGCCCAAAGAAAGTTACATTCTTCTAGTGGACTTTTCTTCTTCGGTTTTATGCCTCTTGGTCGGTCCTTTCCTATGGGCGTCGATCTCAACCATATTTTTCTTTAACGTAAATTTACTAAAGAGATTTGGAAATTGGTGTTGAAAGAGTGTGGGCTGTTTTGGTGTTTTCTTGAAGAGGCCGCTTCTACTTTTTCTCAATTACTTTATGCTCCTTTTAAGAGGAAAGACAAAGATCTTGCTATATTGTAGAAAGTCTGGCTTGAAAGAATCGAGAGGCTTTTCTGAGGCGAAAGAGAAACAAGTGATTGTCTTTTGTAGCCCACTCTCGGGTCTATCCCCTTTTGTATTCATATTTCATGTTATCAATGAAATAGTTTCTTTTTGAAAAAAAAAAAACAAAAAAGAGAAACAAGTGATTCAATTTTAGTGTTTTTTTATGATGCTCTAGATCAAAACTCTTCCGTACTCGTTCTCCTTTTTTATTTCTGCGAATTGGAGGATGGATTTTTTTGTAGCTTTGTGTTAGACCTCCAATTGTAAATGTCTATGCTAGGAAGGGTAAAGGGGGAAATTCATCATCAAGTTAGTTATGGAGTGAAGGGGAGAACGTGTTATGAGTGAAGGGGAGAACGTGTTATGGGATAAAAGTAGGAAGTTAGTGGGAGTTAGGGGTCTTGTGTATTGTGTATGCTCAGTTGAACTGTAGGGAGAGTTTCCGGCCCTCTCGAATTGGCCGTCGGTGTGTACTGTGTTGATGTTTTGGTGTTTTGTCTTTGAATTCCAAGAATTAGTAAGGAGTATCCTTACACTTTGTTTGGTTTTGTTGGATGGATTTTCAATATTCTGTTGTTGTTCTGTCCACGGCCCTTTTCATGCTCTTTATATGTGATCCTAAAAACTTCATGCTGTTTAAGGGAGATTTGGTGAAAAGGATGCAACACACTCTTTTTTATATGTTTTTATTTTATTTTCTGATCTCTTATCCTTGTCCTAAAAGTCAATTTCATTTGAATCTAAAGTATTTGACTGCCTAATTAAGAAACTGATGATGTATGTGACCTTTTCAGTTCTGGGATGATTGATCTGAGAGAATTATCTCTTGTTAAAGGAAAAGCTGCTTGGATGGCATACCTGGTATGTACTTCAAATTTATGCATTGTTAATATCTACATTTTCTTGAGTCTAGAAGTATTTTGGTATTTGAAGTAAGGTCCACTACTGGTTTATCTTTATATTTTTTCCCTGAAATTTGTACTTGTGCTATCCTTACTCATACTGGACATTTTCTCTTTATAACATGATTTTTGGCTAGATTGCAGTTCATTATTGCAGTTAATAGTTTTTGATGAGATAGCAACTTGAAATGTGTTCCACAGGATATTTATTGTTTGGATGCCGATGGATCTCTTTTTGATGCTGCACTTCTTTCTGCAGCTGCTGCATTTTCTCATTGTAAGATTTCAGGCTCTCCACTAGTTGATAACTTGATAAATTTCTGCATACTTTAGTATATGTGATGCTTATGGCAGTAATGCTGGTTATGGGACATTTGTCCTCCATTAAGAACTGTTTTTCAGATTATAGATTGATACTTTATACTTTGAATCCTTTATACATAGACTTTTGTTACCAGATTACCTTCCAGTAATTTTATTTTTTATTTTATTCTTATTATTTTTTTATTTTTTATTTTTGGATATCCGTGTGTCCGGGTCAGCTTACGCACACCTCGACTATTTACGGGCCAACCACCTGATCCTACTACATTTGGTTGACAAGGAAACTCGTAGAATATTAAATCCTAGGTAGGTGGCCACCATGGTTTGAACCCATTCCCTCTAAGTCCTTTGTTATTTACATTGGCATTGACCACTTTCAGTAATTGCTTCCCTTTCTTCAAATTTCTTCTATGGTTATCAATATTTACAAGGACCATTTAGAATCATTTCTTAAATATCAAAGACTTAAGCGTCATTTTCCAAATTTCAAGGACTGAACAGAAACCAATTTAAACGTGGTATCATTTTCTGGGAAAAATTATTTCTGGTGAGAGGCACCCAAGAAGAGGTTGTAGATTGTACTTCATCTCAAAATAAATCCTCTCTTAAAAGTTTTTGTTTTATTTTCATCCAAATAAGCCACAATAACGCCCTAGCCACACAAATTCTAAGAGCTCTAGCGTTGTCTTTTAACACCAGCTTGAGGAATAATTTGGCCCCCCCCCCCCCAAAAAAAAAAACCTATTGGATACAAATTTAAAAATCTTCATGTCCTAATAAGCACTTGATTTAAATTTAAGGTGGTTTTGTGGTTTCTCACTCATAAATCTAACGGTGTAAGCCACACTGTGGCGGTCTCTTCTAATAATTTCTCCATCTTAGGGACTTTGGTCAACTAATTATCAACACAATTAGGCATGCAAAGAGGCATTGTTGAAAAGTATGTTGGATGGATCATTGAAACTGCTACATCATTCCTTCTGAGTAATTCTTCCAAATGGAATAAGGCACCATTAGAGGTCTGAGTACAAATTCTTGAAAGGAAAGAGAGCTTATCCTCTGTCTCAACAAGCGTTTTACTTGATCCCATTCTTGGACTATAAAATTTGTCAATGCTATGAACCATTATTTTTGCAAGGAAGCTTCAGGAGAAAGAATTTCATGATATGATTATGAATTAATATAACTCAATGCGTAGTGTTATTTAAAAAGTAATAAGCCAACTAATTGCCATGGTAAAGAACAAGGAAGGTATATATATATAAAAAAAAAAGAGAATACATAAGCTAAGCACTCTTTAGAACCTATTGGCTTGCATCAGGTACCCAATATGTGTTGGATATGATACTTTTCCTAATATTTATGCTACAAAGCCTACTGGTGAGCCTTTAATACTTAATGATTTTTTCCTCTTTAGGGTTTCAGGGTTTATAGTATGACTTGCACCCACGGTATGAGGGGGTATGGCATGAAGTAGGTTCAGTCCTTTGTTTCACCTCATTGGAAAACTTATGACCACCTTGATTTTATGATTTAACTTGTGAAAATTTTTATAGGTATGCATAAGCTATAGGGTAGCCCAATTGGAGGTTTTTTTTTTGGTAATTCCTTTGGCTTTGTAGGAAACTATTTAGTATTTTTCTTCGGTTAATAGTGAAGAAAAATCAAGAACTTCTTGTGTGTTATCTTCTGTTGATCCCATTTGAACCATGTCAGCGATTATTGGCTATTTTACGAGGCTTTATTTGAAGAATCTAATAATTGCTCTTCAAAAGCTAAGAAATGCTAATACGAGGTTTATCTTCTGGTGATCCCATTTGAACCTTGTCAGCAATTATTGGCTATTTTACAAGGCTTTATTTGAAGAATCTAATAATTGCTCTTCAAAAGCTAAGAAATGCTAATACGAGGTTTATCTTCTGGTGATCCCATTTGAACCTTGTCAGCAATTATTGGCTATTTTACAAGGCTTTATTTGAAGAATCTAATAATTGCTCTTCAAAAGCTAAGAAATGCTAATACGAGGTTTCTTTTTATGTTTTTTTATTTTATTGTTTGTTAACTTGGTAGTTTGAACTACTTTTAGGATGATTGCTTCTTTTTCCTCAGTTAAGCCATATTTTAAACTTCCTGGTTTATATTGTTAGTGCAAATCCCTGTTGTTGCTCTAAATGATGATGGGAAAGTAGTATTTGTCTCCGAGGAAGAAGGGGGAGAAAACTTTGAGAAGGAGCCTGTCAACAAAGAGAAAAGGAAACTGAAATTGAGCTCTATTCCTTTCTCATTAACATGCATACTCCACAAGAACCACATCTTGGCAGACCCTACTGCAGAGGAGGAGTCCATCATGGAAACTATTGTGACCGTGGTTTTAGATTTGTCGGGTCAACTCGTATCCTTCTACAAGCCGGGTGGATCCGTTCTTGCCTTTACATCTGCTGTTCAGGTTGGTCTCTTCCATCTCTGGAAAGTTTATTGATGGAATCCAATTCCGGATTAGCTCCCCGGATTTCTTCTTTCTTTGCTTTTTCCCTGTCTACTTCAGTTTGGTGAAGCTGGTTGGATTTTCAATCTGATATTGGATTGTGAAATTTGATTTTATTATAACGGTAATTTAAAGTGTTTGATTCTTTCAAAAGTGTTCTTGAAAATTCACGTCTATAGATGAAGCATCTGATTAGTATTTATTGGTTCTCTCAAAATTCATGTTAAACTCTAAATATAATTGTGATTTAAAGTGTGAGTGAATACATCCTTAGCTTTAAGCTAATGCACGAGCGGATGACATGGTTGCAGGATTGCGTTGCACTGACGAGACAGAGAGTGAAGGAACTTCAAGTGATTTTAGACGAAGCGATTTCTGGTATGGAAATTGACTAAGTTTTGGAGAGGCTTTTCTTCTAGAATGTAATGATTTGTAGGCTTCCAATTACACTTGTTTGGTTCTCCTGGTTTTGGTGATGATATTTGTTAACCATGAGGATTGTCTTTCTTAAGAGTTTGGTCTCACCAATCAATTTTGGTCCCTGGCAGGGGTTTGATTTCTACACTAAAGTTTTAAGGCAAATATTTATTTATTACTAATTCAAAAGTTCATTTCTCACTTTGATATGATGCATGTGGATGTTTAACCTCTGTAGTGTCTTTTTCTTCTTCTTTTTTTTTCTTAAAATATATGTAACGTACTGGTCCCTGTATTTATTTCTTTCTGTAACGATTGTAACAATTCAGTTCTTGTATCTTAAAAACGTAATGAATGAGTCTCTGATTTTGTAAAAAAGAAAGTCCTTATGTTCGAAAATCTTGTGATGAAGGCGTATGATTGGATAAATGATTGAACAACTTTTATTTTTTACCATAGTTGTTTCCTACGACTTCTTTCTCAAGAAGTACAACACGTAATTGAGTCAGTCATTTTTGGGTATCATGTCCTACCAGTGAGTTACTACGTATCCCTATCTTAGAAGGGCAGTCTACCACCTGCATTTCATTCTCTATTAGGGTCTCCTGCAAATTTAAACAAAAAATTTGACCCAATTACTTGAATCTTTGTATTTCTAAAAATATATAGACAATCGTTGTAAATAAAGATGCAAGTAAAAAATCATTGTAAAAAATGTGGGAAAATAATGAAATAATAAAATAAAAGGGGAAGTGCTCCACTAACTCTACTAGTTTACTTCACAAAAGAGGTCTATAAAAATTTATTATTTCAAGAAAAAAAAATATTAAAAAAAATTTAACACAAAAAAAGTAAAAGAAATGCTTAAAGTTTCTCGTTTCTTTATTCATATTCAGGTTATTGTCAGAAGTAACATTTCTTTAGAATGTGAAATTTTATGGTGTGATTGGCCACTAAAATAGAGTATGAACAGATTTTATAAAAAATGATATACAGGAACTAAATTGGACTTGGGAGTTATTTAGTAATGAAAAATACGTTAGTACCTTGACAAAATTTTATCTTATATTAAACAAACTATTCAATTTTAAAATAAAAGTGGTTCACAATAAAAATATTGTACTAAAAGTAAAAATAATGTGTTTATTAATTTTCCCTTTGACAATTTCAATATTATCCTTAAATTTTAAAGAAAAATTCCCTCCCTAAAATTTGAAAAAGTCTCAACTTGCATTAAAAAAAAATTGCACATTAAATGTGCGGCTAAGCCCAACACACTCCGATGCCTAAGTTAGCAAAGAGTTTCGTTGAGAGTACAAGAGTAGAGCTGAGAGCGTACCCAACACACTCCGATCTCTTTAAGTTGGTTCGAGTAGACCGACTTGATTGGGTTTGAGTCGGGTCTAGTTGGATGGTTCGACCTGGGTAGGTTGGCTCGAAAAGTTGGACTCACGTCACTTTCCTAACTTCACTTTATGGAGATTTGATAGCGTAATTTCACCCATTAAAAATGGCCTCCACTCTTTGGGCATGGAACTATGAAACTCAATTATGAAGAGTAATATTTTTTTGGTGCCCAATAAATATTGAAATTGGAAAATACTCAAGCTTCACGATGGTTGAATACAAATTGAAGTATGTAGAAACATATGCCCACATATATATACACACACAAACACATATGCGTGTGTACACATGAAAAAGGGAAGACCCTAGGAGGTCTAAGCTGCAGTTGAGTTATATATAGCTTCGAAAATAATAGAAAGCGAGAATAGTTAAACGGTAATTGACATATATCTTAAATCAAGAGATTGTGAGTTTGATTTCCCACATCACATATTGTAATTAAAAAAAAAAACTTCGAAAACAATAAAATGTAAATGAATATATATACAAAAGATCAAAGGAAAGTTAATCAGGTAAAGGACCTTTTCACCTTGGGCAATGCCCAACGCAAGTGCTGGAGATTTTTTATTTTATTCTTTTTTCAGCACATCGGCTCTGTCATTTTTGGACTCGAGGCCTATTTGGGTCCTTTTTTTTTACCCAAAGCCTTCATGGACGCGATAAACTTCCTATAAGCCTTTGACTTGTCATTAGTGACAATTTGGTTGAGGTGGTAGATCTTACCTCTTTCAGGGTCAAGTCTTCAATGAGATATATTGCTGTCAATTTTGCCTCCGCTTCAACCAAGTTCTCTATCCGGTCTACTTGATTGCTTAGACCTATAGACTTCGACCTTACATCTTACTAGGTCGAGTCTTCAATGAGATCTACTTAGCTATGTCGGTATGGGGTGATCAACTTTGCCTCTACCTCGACCAAGTGTCTGCTTGATCGCTTAAGCCTAGGGGTTTCGACCTTACCTCCTCAAGGTCGAGTTCTCAATGATGTCTACTTGGTTATGCCCGTTTGGGGTGGTATTTTGCCTCCGCCTCGACCAAGTCCTCCACAAGGTTTACTTGATCGTTTATCTTGGGGGCTTCGACCTTACCTCCTATGGGGCCGATCCTTCATAATGTAGTCTACTCGACTATGTTTGTTTGAGATGGTTAATTTTACCTCCACCTTGACTAGGTACTCTACAAGGTTTATTCGATTGCTTAGGCCTGAGGGCTTCGTCTTAACCTCTTATGGGGTTGAGTCTTCAATGAGGTCTACTCGACTAAGTCGATTTGGGGGTGGACAATTTTACCTCTGTCTGGACAAGTGTTCCATGAGGTGTACTTGATTGCTTAGGCACAAGGGCTCCGACTTCATCTCTCTATGATCGAGTCCTCAATCATAGCTAGAACTTTTATTTGTCCAACTCCTTAACAGGGATGAGACATTGCAAAACAATTAATTTATAGTACTTCTTTGGACATTTAGCATGTTGACCCGTCACACATAGGATGTAAGTGAAATAGGCTTAAAGTCCCCGACAAATGCTCTTATCTACTCAAGCTTGTCAGTACCCCTAAGAGTGTACCTTGCACCCTATATGTCTCTCCTCTTATTTATAGAGGGAGTCTTATTGAGTTGGTTCAGGTAGACTGGGTTGACTGGATTTAGGTCGGCTCGAGTCTGGTCATCCACTACCACGAACTCATCGACCTTGGTTACGACTCTTTTGCCTTCCCCCAAGGTTAGAGGTAGCTAGATGCTTCCCTCGGGGTTAGACCTTTCGCCCGAGAAGCTGACCAGCGTGGTGGGACATACTTTTAAGCTTGGTCGAGTCCCACCCAAGGGTTCGCAATACCCCCATGGTAATGGTAAGGACGTTGCTGTCGAAGTGCCTTTTGGTCCTGCGGCTAGGCACACAACTCTCTCCCACAGACTGCTTTAGGTATCCTCGCTGGACTAAAGACTCGACTTGGTCCTTAAGGTTGCAACAGTCTGCCACGTCATGGCCAAAGTCGCGATGGAATTTGCAATACTTACATCGGTTTGTTTTGCCTGCATTGTTATTTGATCGCTCGGGCCATTGGAGTAGGTTGTCGACCATGTCTCGTCGATCCGTGCTAGTATTTGGTGCACTGGGATATGCGTAGGGGTGTATTTCCCGAACCTAGCCGACCAGTCCGTTTTGGTATCGGATCAGGATGAGCTTGATTCCTTACGTGAGGTGCAGTTTGATCGGTCGACTTACCTTTGTCTCTTCAAAATGACTCCAGGTGTCTTTTACTCAGGGATTGCACTACAAGCAGCTCTTTTCCATCTATGTGTCACTGGATCATGGCCATAAGGTGGTGCATGTGGGTACAACGGTAATCGTTTGTGGTCCTACGCCTCACTGTCACTTTAGGATTCGTATGCATGTCTCCTACTCAAACTTACCCTCAACAGGTATGAAGCATCTACTTAAAGGTTCAAAATACCACCAGGGTAAGGACGTTGCGACCGAAGTGCCTCTTGTCGTACAGCTGGACATAAAACTCTCTCCCATGAACTCCTTTAGATGACTTCGAGAGTTTCTTACATAGGGATTCCACTTCAAGCAGCTCTTCTCCAGTTATGTGCCGCTGGATCAGGGCCATGAGGTGGTGCACACGGGTACAATGGTAACCATTTATGGTCCTACGCCCCACTGTCGCTTTAGAATTCGAACGCGTGTCCTGCTCAGACTTACCTTCAACAGGTATGCAGCATATACTTAAAGGTATATATTGTGTAATCTAATATTGGAATATATATCACTAGAAAGCTATATATTATATAACCATTTGGAGCAATATATGTTTATCATATTATATTATGATCATTGGAATATATTATATAACTTAATAATTTAGAAATAACGGCCATATACAGAATCAATGAAACCAAATTGAAATTAATCTTTGGTGGAAAAGTAAGAAGGAAAATTTTTTCTAGAAAATAAAGAAAAAATAATAGAAAGGGCAATGAGGAAAAAAGAACTTATAGTTGAAAATAAATAAACTTATAGTTTAGTATATAATAATAAAATGTATATATTACATAATCTTTTGGAACGCAGGATGTTTATCATAATGTAAATTAGAAGATTAAAAAGAAAGATATACATATATTTTTTTTAATACAATGTGTGGGGGTGGGGATCGAACTCACAACCTCCTCACGCTGGAATAATGAAACAAAAAAAGAGGAAGGCTAGAATGGAGGTTACTGGCACATTCTCGTTGAAGTACCGTACTTGCAACATTCAATGGTAAAGCGAGCAACATAGGCCTTAAGATATCCGTCCAACTTTTGTTTAATGAACATAAGGCGGGTCTCGGTCCGCCTGTTGACGCATGAGTAATGAAACTGATCGACAAACTTTCGAAAAAGATCTTGGTACATTGAGATGGAGAGTTGGGGCAAGTCTGGGAACCATTGCCTGGCGAGGCCGACGATAAGCACGTTGGCAGTGAACGACTCTTGAGTTATCTCCAGAGGTTCATAGTGGACCGTGGATCCTTTGTTTCTGTTCCTAGTTTGTTTCGCACTCGATTCAAGATTTCCTTCTTGATGCGATCAAGCTCCTCCACGCTGATCCCATTGTGGGATCTGCTCGAGTGGCTGGATGTGTCGGTGCTTGTTTGGGGAGTCTGACTACTGTTAGGGGATCCTTTTCATTAAGACCTTCTTGGGGCACTGCATGGGATTCCCCTTTGGTGGTCTGACCGGTGCCCCTGCTTTCATTCGCTGGTGTGGCAGCTTTTCTGGCACGGTCGGTTAAGATGACATCGATCAGTCTCCTGATTTGAGAGGACATTTAGGTGTTCATCGCCCGTACCTCAGCTTGGAGTCCCGAGCTTCTCCTATGAGGGTTTCCCACCTTTCGCTTCTCGAGGTTACCCATCGGGCAAAGTGGGTGACCCGAGTTCATGACTCCCTTGTCGTTATGGGAATTGGGGGAGTGATGGCTGTCTAG

mRNA sequence

ATGGGATTGCCGAATGCTGCTTCTGGGGATTTGTCGTCGGAGATGGAGGTTGATGCTTTTAGACGACTCTTCCCACTTCAGTTTTATGAGCGTCATTTCGCTGAATCGATACGTCCTGATGGAAGAGCACTGGGGAAAGCTAGAGATACAACCATTGCTCTTGGGCCTGTATCATCTGCAAATGGTTCTGCCCTGGCTAAGATTGGTTCTACGACAATGTTGGCTGCTATTAAAATGGAAGTAATGACGCCTTCCATAGAGTCACCGGATGAGGGTTGCATAGCTATTGATTTCCATATGCCCCCAATATGCTCTCCGATTGTTAGGCCTGGGAGACCAGCTGAAGCCGCACCTGTGATTTCAAAGCAGTTATCTGACACCATTTCAAGTTCTGGGATGATTGATCTGAGAGAATTATCTCTTGTTAAAGGAAAAGCTGCTTGGATGGCATACCTGGATATTTATTGTTTGGATGCCGATGGATCTCTTTTTGATGCTGCACTTCTTTCTGCAGCTGCTGCATTTTCTCATTTGCAAATCCCTGTTGTTGCTCTAAATGATGATGGGAAAGTAGTATTTGTCTCCGAGGAAGAAGGGGGAGAAAACTTTGAGAAGGAGCCTGTCAACAAAGAGAAAAGGAAACTGAAATTGAGCTCTATTCCTTTCTCATTAACATGCATACTCCACAAGAACCACATCTTGGCAGACCCTACTGCAGAGGAGGAGTCCATCATGGAAACTATTGTGACCGTGGTTTTAGATTTGTCGGGTCAACTCGTATCCTTCTACAAGCCGGGTGGATCCGTTCTTGCCTTTACATCTGCTGTTCAGTTTGGTGAAGCTGGATTGCGTTGCACTGACGAGACAGAGAGTGAAGGAACTTCAAGTGATTTTAGACGAAGCGATTTCTGGTACTCTACAAGGTTTATTCGATTGCTTAGGCCTGAGGGCTTCGTCTTAACCTCTTATGGGGTTGAGTCTTCAATGAGGTCTACTCGACTAAGTCGATTTGGGGGTGGACAATTTTACCTCTGTCTGGACAAGTGTTCCATGAGGTCGGCTCGAGTCTGGTCATCCACTACCACGAACTCATCGACCTTGGTTACGACTCTTTTGCCTTCCCCCAAGGTTGTCGACCATGTCTCGTCGATCCGTGCTAGTATTTGGTGCACTGGGATATGCGTAGGGGTGTATTTCCCGAACCTAGCCGACCAGTCCGTTTTGGTATCGGATCAGGATGAGCTTGATTCCTTACGTGAGGGATTGCACTACAAGCAGCTCTTTTCCATCTATGTGTCACTGGATCATGGCCATAAGGTGGTGCATGTGGGTATGAAGCATCTACTTAAAGGTTCAAAATACCACCAGGGTAAGGACGTTGCGACCGAAGTGCCTCTTGTCGGATTCCACTTCAAGCAGCTCTTCTCCAGTTATGTGCCGCTGGATCAGGGCCATGAGGTGGTGCACACGGGTACAATGTTTGTTTCGCACTCGATTCAAGATTTCCTTCTTGATGCGATCAAGCTCCTCCACGCTGATCCCATTGTGGGATCTGCTCGAGTGGCTGGATGTGTCGGTGCTTGTTTGGGGAGTCTGACTACTGTTAGGGGATCCTTTTCATTAAGACCTTCTTGGGGCACTGCATGGGATTCCCCTTTGGTGTCTCCTGATTTGAGAGGACATTTAGGTGTTCATCGCCCGTACCTCAGCTTGGAGTCCCGAGCTTCTCCTATGAGGGTTTCCCACCTTTCGCTTCTCGAGGTTACCCATCGGGCAAAGTGGGTGACCCGAGTTCATGACTCCCTTGTCGTTATGGGAATTGGGGGAGTGATGGCTGTCTAG

Coding sequence (CDS)

ATGGGATTGCCGAATGCTGCTTCTGGGGATTTGTCGTCGGAGATGGAGGTTGATGCTTTTAGACGACTCTTCCCACTTCAGTTTTATGAGCGTCATTTCGCTGAATCGATACGTCCTGATGGAAGAGCACTGGGGAAAGCTAGAGATACAACCATTGCTCTTGGGCCTGTATCATCTGCAAATGGTTCTGCCCTGGCTAAGATTGGTTCTACGACAATGTTGGCTGCTATTAAAATGGAAGTAATGACGCCTTCCATAGAGTCACCGGATGAGGGTTGCATAGCTATTGATTTCCATATGCCCCCAATATGCTCTCCGATTGTTAGGCCTGGGAGACCAGCTGAAGCCGCACCTGTGATTTCAAAGCAGTTATCTGACACCATTTCAAGTTCTGGGATGATTGATCTGAGAGAATTATCTCTTGTTAAAGGAAAAGCTGCTTGGATGGCATACCTGGATATTTATTGTTTGGATGCCGATGGATCTCTTTTTGATGCTGCACTTCTTTCTGCAGCTGCTGCATTTTCTCATTTGCAAATCCCTGTTGTTGCTCTAAATGATGATGGGAAAGTAGTATTTGTCTCCGAGGAAGAAGGGGGAGAAAACTTTGAGAAGGAGCCTGTCAACAAAGAGAAAAGGAAACTGAAATTGAGCTCTATTCCTTTCTCATTAACATGCATACTCCACAAGAACCACATCTTGGCAGACCCTACTGCAGAGGAGGAGTCCATCATGGAAACTATTGTGACCGTGGTTTTAGATTTGTCGGGTCAACTCGTATCCTTCTACAAGCCGGGTGGATCCGTTCTTGCCTTTACATCTGCTGTTCAGTTTGGTGAAGCTGGATTGCGTTGCACTGACGAGACAGAGAGTGAAGGAACTTCAAGTGATTTTAGACGAAGCGATTTCTGGTACTCTACAAGGTTTATTCGATTGCTTAGGCCTGAGGGCTTCGTCTTAACCTCTTATGGGGTTGAGTCTTCAATGAGGTCTACTCGACTAAGTCGATTTGGGGGTGGACAATTTTACCTCTGTCTGGACAAGTGTTCCATGAGGTCGGCTCGAGTCTGGTCATCCACTACCACGAACTCATCGACCTTGGTTACGACTCTTTTGCCTTCCCCCAAGGTTGTCGACCATGTCTCGTCGATCCGTGCTAGTATTTGGTGCACTGGGATATGCGTAGGGGTGTATTTCCCGAACCTAGCCGACCAGTCCGTTTTGGTATCGGATCAGGATGAGCTTGATTCCTTACGTGAGGGATTGCACTACAAGCAGCTCTTTTCCATCTATGTGTCACTGGATCATGGCCATAAGGTGGTGCATGTGGGTATGAAGCATCTACTTAAAGGTTCAAAATACCACCAGGGTAAGGACGTTGCGACCGAAGTGCCTCTTGTCGGATTCCACTTCAAGCAGCTCTTCTCCAGTTATGTGCCGCTGGATCAGGGCCATGAGGTGGTGCACACGGGTACAATGTTTGTTTCGCACTCGATTCAAGATTTCCTTCTTGATGCGATCAAGCTCCTCCACGCTGATCCCATTGTGGGATCTGCTCGAGTGGCTGGATGTGTCGGTGCTTGTTTGGGGAGTCTGACTACTGTTAGGGGATCCTTTTCATTAAGACCTTCTTGGGGCACTGCATGGGATTCCCCTTTGGTGTCTCCTGATTTGAGAGGACATTTAGGTGTTCATCGCCCGTACCTCAGCTTGGAGTCCCGAGCTTCTCCTATGAGGGTTTCCCACCTTTCGCTTCTCGAGGTTACCCATCGGGCAAAGTGGGTGACCCGAGTTCATGACTCCCTTGTCGTTATGGGAATTGGGGGAGTGATGGCTGTCTAG

Protein sequence

MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLSGQLVSFYKPGGSVLAFTSAVQFGEAGLRCTDETESEGTSSDFRRSDFWYSTRFIRLLRPEGFVLTSYGVESSMRSTRLSRFGGGQFYLCLDKCSMRSARVWSSTTTNSSTLVTTLLPSPKVVDHVSSIRASIWCTGICVGVYFPNLADQSVLVSDQDELDSLREGLHYKQLFSIYVSLDHGHKVVHVGMKHLLKGSKYHQGKDVATEVPLVGFHFKQLFSSYVPLDQGHEVVHTGTMFVSHSIQDFLLDAIKLLHADPIVGSARVAGCVGACLGSLTTVRGSFSLRPSWGTAWDSPLVSPDLRGHLGVHRPYLSLESRASPMRVSHLSLLEVTHRAKWVTRVHDSLVVMGIGGVMAV

Homology

[Close]

BLAST of Moc01g16610 vs. NCBI nr
Match: XP_022152237.1 (exosome complex component RRP43 [Momordica charantia])

HSP 1 Score: 535.8 bits (1379), Expect = 4.9e-148
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 181 PVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAE 240
           PVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAE
Sbjct: 181 PVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAE 240

Query: 241 EESIMETIVTVVLDLSGQLVSFYKPGGSVLAFTSAVQ 278
           EESIMETIVTVVLDLSGQLVSFYKPGGSVLAFTSAVQ
Sbjct: 241 EESIMETIVTVVLDLSGQLVSFYKPGGSVLAFTSAVQ 277

[Close]

BLAST of Moc01g16610 vs. NCBI nr
Match: XP_023544252.1 (exosome complex component RRP43 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 518.5 bits (1334), Expect = 8.0e-143
Identity = 264/277 (95.31%), Postives = 274/277 (98.92%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFP+QF+ERH AESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAK+GSTTMLAAIKMEVMTPSIESPDEGCIA+DFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 181 PVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAE 240
           PVVALNDDGKVVFVSEEEGGENFEKE VNKEKRKLKL+S+PFSLTC+LHKN+ILADPTAE
Sbjct: 181 PVVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAE 240

Query: 241 EESIMETIVTVVLDLSGQLVSFYKPGGSVLAFTSAVQ 278
           EES+METIVTVVLD SGQLVSFYKPGGSVLA+TSAVQ
Sbjct: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQ 277

[Close]

BLAST of Moc01g16610 vs. NCBI nr
Match: XP_008460772.1 (PREDICTED: exosome complex component RRP43 isoform X1 [Cucumis melo])

HSP 1 Score: 518.1 bits (1333), Expect = 1.1e-142
Identity = 262/277 (94.58%), Postives = 274/277 (98.92%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSS+MEVDAFRRLFP+QFYERH AESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 13  MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 72

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAKIGSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPVI
Sbjct: 73  NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 132

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 133 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 192

Query: 181 PVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAE 240
           PVVALNDDG+VVFVSEEEGGENFEKEPVNKEKRKLKL+S+PFSLTC+LHK +ILADPTAE
Sbjct: 193 PVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILADPTAE 252

Query: 241 EESIMETIVTVVLDLSGQLVSFYKPGGSVLAFTSAVQ 278
           EES+METIVTVVLD SGQLVSFYKPGGSVLA+TSAVQ
Sbjct: 253 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQ 289

[Close]

BLAST of Moc01g16610 vs. NCBI nr
Match: XP_008460773.1 (PREDICTED: exosome complex component RRP43 isoform X2 [Cucumis melo] >XP_008460774.1 PREDICTED: exosome complex component RRP43 isoform X2 [Cucumis melo])

HSP 1 Score: 518.1 bits (1333), Expect = 1.1e-142
Identity = 262/277 (94.58%), Postives = 274/277 (98.92%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSS+MEVDAFRRLFP+QFYERH AESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAKIGSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 181 PVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAE 240
           PVVALNDDG+VVFVSEEEGGENFEKEPVNKEKRKLKL+S+PFSLTC+LHK +ILADPTAE
Sbjct: 181 PVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILADPTAE 240

Query: 241 EESIMETIVTVVLDLSGQLVSFYKPGGSVLAFTSAVQ 278
           EES+METIVTVVLD SGQLVSFYKPGGSVLA+TSAVQ
Sbjct: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQ 277

[Close]

BLAST of Moc01g16610 vs. NCBI nr
Match: KAG7033523.1 (Exosome complex component RRP43 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 517.3 bits (1331), Expect = 1.8e-142
Identity = 263/277 (94.95%), Postives = 274/277 (98.92%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFP+QF+ERH AESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAK+GSTTMLAAIKMEVMTPSIESPDEGCIA+DFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 181 PVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAE 240
           PVVALNDDGKVVFVSEEEGGENFEKE VNKE+RKLKL+S+PFSLTC+LHKN+ILADPTAE
Sbjct: 181 PVVALNDDGKVVFVSEEEGGENFEKEAVNKERRKLKLNSLPFSLTCLLHKNYILADPTAE 240

Query: 241 EESIMETIVTVVLDLSGQLVSFYKPGGSVLAFTSAVQ 278
           EES+METIVTVVLD SGQLVSFYKPGGSVLA+TSAVQ
Sbjct: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQ 277

[Close]

BLAST of Moc01g16610 vs. ExPASy Swiss-Prot
Match: Q96B26 (Exosome complex component RRP43 OS=Homo sapiens OX=9606 GN=EXOSC8 PE=1 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 6.4e-42
Identity = 90/252 (35.71%), Postives = 147/252 (58.33%), Query Frame = 0


Query: 20  FRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKM 79
           F+ + PL++Y R   E+ RPDGR LG+ R TT+ +G +S+A+GSAL K+G+TT++  +K 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKA 64

Query: 80  EVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 139
           E   PS ++PD+G +  +  +PP+CS   R G P E A V S+ ++D I +S +I   +L
Sbjct: 65  EFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDL 124

Query: 140 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEG 199
            +  GK  W+ Y D+ CLD DG++ DA   +  AA  ++Q+P V +N++  +  V+    
Sbjct: 125 CISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVN---- 184

Query: 200 GENFEKEPVNKEKRKLKLSSIPFSLT-CILHKNHILADPTAEEESIMETIVTVVLDLSGQ 259
                     K+K  L + + P + +  +     ++ DPT EEE +    +T+V+D  G+
Sbjct: 185 ---------LKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGK 243

Query: 260 LVSFYKPGGSVL 271
           L   +KPGGS L
Sbjct: 245 LCCLHKPGGSGL 243

[Close]

BLAST of Moc01g16610 vs. ExPASy Swiss-Prot
Match: Q9D753 (Exosome complex component RRP43 OS=Mus musculus OX=10090 GN=Exosc8 PE=1 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.9e-41
Identity = 90/252 (35.71%), Postives = 146/252 (57.94%), Query Frame = 0


Query: 20  FRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKM 79
           F+ + PL++Y R   E+ RPDGR LG+ R TT+ +G +S+A+GSAL K+G+TT++  +K 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKA 64

Query: 80  EVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 139
           E   P +++PD G +  +  +PP+CS   R G P E A V S+ ++D + +S +I   +L
Sbjct: 65  EFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDL 124

Query: 140 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEG 199
            +  GK AW+ Y D+ CLD DG++ DA   +  AA  ++Q+P V +N++  +  V+    
Sbjct: 125 CISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVN---- 184

Query: 200 GENFEKEPVNKEKRKLKLSSIPFSLT-CILHKNHILADPTAEEESIMETIVTVVLDLSGQ 259
                     K+K  L + + P + +  +     ++ DPT EEE +    +TVV D  G+
Sbjct: 185 ---------LKKKSYLNVRTNPVATSFAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGK 243

Query: 260 LVSFYKPGGSVL 271
           L   +KPGGS L
Sbjct: 245 LCCLHKPGGSGL 243

[Close]

BLAST of Moc01g16610 vs. ExPASy Swiss-Prot
Match: Q2KHU3 (Exosome complex component RRP43 OS=Bos taurus OX=9913 GN=EXOSC8 PE=2 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.3e-39
Identity = 89/252 (35.32%), Postives = 145/252 (57.54%), Query Frame = 0


Query: 20  FRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKM 79
           F+ + PL++Y R   E+ RPDGR LG+ R TT+ +G + +A+GSAL K+G+TT++  IK 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSIGTADGSALVKLGNTTVICGIKA 64

Query: 80  EVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 139
           E   P  ++PD+G +  +  + P+CS   R G P E A V S+ ++D I +S +I   +L
Sbjct: 65  EFGAPPTDAPDKGYVVPNVDLSPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDL 124

Query: 140 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEG 199
            +  GK AW+ Y D+ CL+ DG++ DA   +  AA  ++Q+P V +N++  +  V+    
Sbjct: 125 CISSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLPEVTINEETALAEVN---- 184

Query: 200 GENFEKEPVNKEKRKLKLSSIPFSLT-CILHKNHILADPTAEEESIMETIVTVVLDLSGQ 259
                     K+K  L + + P + +  +     ++ DPT EEE +    +TVV+D  G+
Sbjct: 185 ---------LKKKSCLNIRTHPVATSFAVFDDTLLIVDPTEEEEHLATGTLTVVMDEEGR 243

Query: 260 LVSFYKPGGSVL 271
           L   +KPGGS L
Sbjct: 245 LCCLHKPGGSGL 243

[Close]

BLAST of Moc01g16610 vs. ExPASy Swiss-Prot
Match: Q10205 (Exosome complex component rrp43 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp43 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.0e-31
Identity = 79/249 (31.73%), Postives = 136/249 (54.62%), Query Frame = 0


Query: 20  FRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKM 79
           F+++ P Q+      + +R DGR++ + R+  I    +S+ANGSA+ + G    +  IK 
Sbjct: 17  FKKITPEQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKA 76

Query: 80  EVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 139
           E+  P   SP+EG I  +  + P+CS   +PG P++ A V+S++L  T+  S +I+L+ L
Sbjct: 77  EIAEPFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQSL 136

Query: 140 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEG 199
            + + KAAW+ Y DI CL+ DGS FD A  +  AA   +++P    ++D + V  +    
Sbjct: 137 CIFEKKAAWVLYADIICLNYDGSAFDYAWAALFAALKTVKLPTAVWDEDLERVICA---- 196

Query: 200 GENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLSGQL 259
                    +   R ++LS+   S +  +  + +LADPT EEE +    +T++L+ S  +
Sbjct: 197 ---------STLTRPVQLSTEVRSFSWSVFDDKLLADPTDEEEDLSTEFLTIMLNSSKNI 252

Query: 260 VSFYKPGGS 269
           V   K GG+
Sbjct: 257 VKIIKLGGT 252

[Close]

BLAST of Moc01g16610 vs. ExPASy Swiss-Prot
Match: Q8TYC2 (Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) OX=190192 GN=rrp42 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 6.6e-31
Identity = 77/227 (33.92%), Postives = 127/227 (55.95%), Query Frame = 0


Query: 38  RPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAID 97
           R DGR   + R   +  G +S ANGSAL ++G+T ++  +K+EV  P  +SP+EG +A++
Sbjct: 23  RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDSPNEGALAVN 82

Query: 98  FHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCL 157
             + P+  P   PG P E A  +S+ +   I  S MIDL EL + +G+  W+ ++DI+ L
Sbjct: 83  AELVPLADPSFEPGPPDENAIELSRVVDRGIRESEMIDLEELCIEEGEHCWVTFVDIHVL 142

Query: 158 DADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKL 217
           D DG+LFDA+++ + +A S  ++P   + DD               E E + ++   L +
Sbjct: 143 DHDGNLFDASMIGSVSALSITEVPKAEVVDD---------------EVEVMEEDTEPLAI 202

Query: 218 SSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLSGQLVSFYK 265
           +  P S+T      ++L DP  EEE IM+T +TV +  SG++ +  K
Sbjct: 203 NDFPISVTIAKVGEYLLVDPCLEEEVIMDTRLTVTVTESGEVCAVQK 234

[Close]

BLAST of Moc01g16610 vs. ExPASy TrEMBL
Match: A0A6J1DFM7 (exosome complex component RRP43 OS=Momordica charantia OX=3673 GN=LOC111020008 PE=4 SV=1)

HSP 1 Score: 535.8 bits (1379), Expect = 2.4e-148
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 181 PVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAE 240
           PVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAE
Sbjct: 181 PVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAE 240

Query: 241 EESIMETIVTVVLDLSGQLVSFYKPGGSVLAFTSAVQ 278
           EESIMETIVTVVLDLSGQLVSFYKPGGSVLAFTSAVQ
Sbjct: 241 EESIMETIVTVVLDLSGQLVSFYKPGGSVLAFTSAVQ 277

[Close]

BLAST of Moc01g16610 vs. ExPASy TrEMBL
Match: A0A1S3CEE1 (exosome complex component RRP43 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499535 PE=4 SV=1)

HSP 1 Score: 518.1 bits (1333), Expect = 5.1e-143
Identity = 262/277 (94.58%), Postives = 274/277 (98.92%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSS+MEVDAFRRLFP+QFYERH AESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAKIGSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 181 PVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAE 240
           PVVALNDDG+VVFVSEEEGGENFEKEPVNKEKRKLKL+S+PFSLTC+LHK +ILADPTAE
Sbjct: 181 PVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILADPTAE 240

Query: 241 EESIMETIVTVVLDLSGQLVSFYKPGGSVLAFTSAVQ 278
           EES+METIVTVVLD SGQLVSFYKPGGSVLA+TSAVQ
Sbjct: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQ 277

[Close]

BLAST of Moc01g16610 vs. ExPASy TrEMBL
Match: A0A1S3CD66 (exosome complex component RRP43 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499535 PE=4 SV=1)

HSP 1 Score: 518.1 bits (1333), Expect = 5.1e-143
Identity = 262/277 (94.58%), Postives = 274/277 (98.92%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSS+MEVDAFRRLFP+QFYERH AESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 13  MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 72

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAKIGSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPVI
Sbjct: 73  NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 132

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 133 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 192

Query: 181 PVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAE 240
           PVVALNDDG+VVFVSEEEGGENFEKEPVNKEKRKLKL+S+PFSLTC+LHK +ILADPTAE
Sbjct: 193 PVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILADPTAE 252

Query: 241 EESIMETIVTVVLDLSGQLVSFYKPGGSVLAFTSAVQ 278
           EES+METIVTVVLD SGQLVSFYKPGGSVLA+TSAVQ
Sbjct: 253 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQ 289

[Close]

BLAST of Moc01g16610 vs. ExPASy TrEMBL
Match: A0A6J1ESF5 (exosome complex component RRP43 OS=Cucurbita moschata OX=3662 GN=LOC111435558 PE=4 SV=1)

HSP 1 Score: 516.5 bits (1329), Expect = 1.5e-142
Identity = 263/277 (94.95%), Postives = 273/277 (98.56%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFP+QF+ERH AESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAK+GSTTMLAAIKMEVMTPSIESPDEGCIA+DFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 181 PVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAE 240
           P VALNDDGKVVFVSEEEGGENFEKE VNKEKRKLKL+S+PFSLTC+LHKN+ILADPTAE
Sbjct: 181 PFVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAE 240

Query: 241 EESIMETIVTVVLDLSGQLVSFYKPGGSVLAFTSAVQ 278
           EES+METIVTVVLD SGQLVSFYKPGGSVLA+TSAVQ
Sbjct: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQ 277

[Close]

BLAST of Moc01g16610 vs. ExPASy TrEMBL
Match: A0A6J1HVL5 (exosome complex component RRP43 OS=Cucurbita maxima OX=3661 GN=LOC111467240 PE=4 SV=1)

HSP 1 Score: 513.8 bits (1322), Expect = 9.6e-142
Identity = 262/277 (94.58%), Postives = 273/277 (98.56%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFP+QF+ERH AESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAK+GSTTMLAAIKMEVMTPSIESPDEGCIA+DFHMP ICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPSICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 181 PVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAE 240
           PVVALNDDGKVVFVSEE+GGENFEKE VNKEKRKLKL+S+PFSLTC+LHKN+ILADPTAE
Sbjct: 181 PVVALNDDGKVVFVSEEKGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAE 240

Query: 241 EESIMETIVTVVLDLSGQLVSFYKPGGSVLAFTSAVQ 278
           EES+METIVTVVLD SGQLVSFYKPGGSVLA+TSAVQ
Sbjct: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQ 277

[Close]

BLAST of Moc01g16610 vs. TAIR 10
Match: AT1G60080.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 419.1 bits (1076), Expect = 6.2e-117
Identity = 214/280 (76.43%), Postives = 250/280 (89.29%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA 60
           MG+P+AA  DLS+EMEVDAFRR+FPL+F+ERH +ES+RPDGR LGKARDT + LG VS+A
Sbjct: 1   MGIPDAAQ-DLSTEMEVDAFRRIFPLRFFERHLSESLRPDGRQLGKARDTIVNLGLVSTA 60

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120
           +GSALAKIGSTTMLAAI+MEVMTPS +SPDEGCIAI+FHMPPICSP VRPGRPAEAAPVI
Sbjct: 61  DGSALAKIGSTTMLAAIRMEVMTPSTDSPDEGCIAIEFHMPPICSPTVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SK+LSDTI SSGMIDL+EL LV GKAAWM YLDIYCLDADG+LFDAALL+A AAFS+LQI
Sbjct: 121 SKRLSDTILSSGMIDLKELCLVSGKAAWMGYLDIYCLDADGALFDAALLAAVAAFSNLQI 180

Query: 181 PVVALNDDGKVVFVSEEEGGEN---FEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADP 240
           P+VALND+G++V V+ E+  +N    EKE VNKEKRKL L +IPFSLTCILHKN+ILADP
Sbjct: 181 PIVALNDNGRIVAVTGEKDQDNALITEKEAVNKEKRKLTLKNIPFSLTCILHKNYILADP 240

Query: 241 TAEEESIMETIVTVVLDLSGQLVSFYKPGGSVLAFTSAVQ 278
           T EEESIM+T+VTVVLD S Q+VSFYK GG+ LA++SA++
Sbjct: 241 TTEEESIMDTLVTVVLDSSDQMVSFYKSGGAALAYSSAIK 279

[Close]

BLAST of Moc01g16610 vs. TAIR 10
Match: AT3G07750.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 99.0 bits (245), Expect = 1.4e-20
Identity = 79/255 (30.98%), Postives = 122/255 (47.84%), Query Frame = 0


Query: 26  LQFYERHF-----AESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKME 85
           L   E+HF     A+ +R DGR     R   +  G +  ANGSA  +IG T ++A++K E
Sbjct: 3   LSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAE 62

Query: 86  VMTPSIESPDEGCIAIDFHMPPICSPIV--RPGR--PAEAAPVISKQLSDTISSSGM-ID 145
           +  PS   PD+G +A+     P   P    R G    +E A  + + L    S +G  I+
Sbjct: 63  IGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGIN 122

Query: 146 LRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVS 205
           L  L + +GK  W  Y+D   + +DG+L DA   +  AA ++  IP        KV   +
Sbjct: 123 LSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIP--------KVNVSA 182

Query: 206 EEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDL 265
           E    E  E +  ++E  +   SS+P  +T      H + D TAEEES M + V++ ++ 
Sbjct: 183 EVADDEQPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNR 242

Query: 266 SGQLVSFYKPGGSVL 271
           +G +    K  GS L
Sbjct: 243 TGHICGLTKRSGSGL 249

[Close]

BLAST of Moc01g16610 vs. TAIR 10
Match: AT3G07750.2 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 99.0 bits (245), Expect = 1.4e-20
Identity = 79/255 (30.98%), Postives = 122/255 (47.84%), Query Frame = 0


Query: 26  LQFYERHF-----AESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKME 85
           L   E+HF     A+ +R DGR     R   +  G +  ANGSA  +IG T ++A++K E
Sbjct: 3   LSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAE 62

Query: 86  VMTPSIESPDEGCIAIDFHMPPICSPIV--RPGR--PAEAAPVISKQLSDTISSSGM-ID 145
           +  PS   PD+G +A+     P   P    R G    +E A  + + L    S +G  I+
Sbjct: 63  IGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGIN 122

Query: 146 LRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVS 205
           L  L + +GK  W  Y+D   + +DG+L DA   +  AA ++  IP        KV   +
Sbjct: 123 LSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIP--------KVNVSA 182

Query: 206 EEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDL 265
           E    E  E +  ++E  +   SS+P  +T      H + D TAEEES M + V++ ++ 
Sbjct: 183 EVADDEQPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNR 242

Query: 266 SGQLVSFYKPGGSVL 271
           +G +    K  GS L
Sbjct: 243 TGHICGLTKRSGSGL 249

The following BLAST results are available for this feature:

BLAST of Moc01g16610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152237.1	4.9e-148	100.00	exosome complex component RRP43 [Momordica charantia]	[more]
XP_023544252.1	8.0e-143	95.31	exosome complex component RRP43 [Cucurbita pepo subsp. pepo]	[more]
XP_008460772.1	1.1e-142	94.58	PREDICTED: exosome complex component RRP43 isoform X1 [Cucumis melo]	[more]
XP_008460773.1	1.1e-142	94.58	PREDICTED: exosome complex component RRP43 isoform X2 [Cucumis melo] >XP_0084607...	[more]
KAG7033523.1	1.8e-142	94.95	Exosome complex component RRP43 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Moc01g16610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96B26	6.4e-42	35.71	Exosome complex component RRP43 OS=Homo sapiens OX=9606 GN=EXOSC8 PE=1 SV=1	[more]
Q9D753	1.9e-41	35.71	Exosome complex component RRP43 OS=Mus musculus OX=10090 GN=Exosc8 PE=1 SV=1	[more]
Q2KHU3	1.3e-39	35.32	Exosome complex component RRP43 OS=Bos taurus OX=9913 GN=EXOSC8 PE=2 SV=1	[more]
Q10205	1.0e-31	31.73	Exosome complex component rrp43 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
Q8TYC2	6.6e-31	33.92	Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324...	[more]

BLAST of Moc01g16610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DFM7	2.4e-148	100.00	exosome complex component RRP43 OS=Momordica charantia OX=3673 GN=LOC111020008 P...	[more]
A0A1S3CEE1	5.1e-143	94.58	exosome complex component RRP43 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034995...	[more]
A0A1S3CD66	5.1e-143	94.58	exosome complex component RRP43 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034995...	[more]
A0A6J1ESF5	1.5e-142	94.95	exosome complex component RRP43 OS=Cucurbita moschata OX=3662 GN=LOC111435558 PE...	[more]
A0A6J1HVL5	9.6e-142	94.58	exosome complex component RRP43 OS=Cucurbita maxima OX=3661 GN=LOC111467240 PE=4...	[more]

BLAST of Moc01g16610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60080.1	6.2e-117	76.43	3'-5'-exoribonuclease family protein	[more]
AT3G07750.1	1.4e-20	30.98	3'-5'-exoribonuclease family protein	[more]
AT3G07750.2	1.4e-20	30.98	3'-5'-exoribonuclease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 16..287 e-value: 7.9E-75 score: 253.8
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 48..181 e-value: 7.3E-21 score: 75.0
None	No IPR available	PANTHER	PTHR11097	EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN	coord: 14..277
None	No IPR available	PANTHER	PTHR11097:SF28	SUBFAMILY NOT NAMED	coord: 14..277
None	No IPR available	CDD	cd11369	RNase_PH_RRP43	coord: 21..271 e-value: 1.17818E-106 score: 320.273
IPR036345	Exoribonuclease, PH domain 2 superfamily	SUPERFAMILY	55666	Ribonuclease PH domain 2-like	coord: 215..282
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 18..243

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc01g16610.1	Moc01g16610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0000467	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0071028	nuclear mRNA surveillance
biological_process	GO:0071042	nuclear polyadenylation-dependent mRNA catabolic process
biological_process	GO:0071035	nuclear polyadenylation-dependent rRNA catabolic process
biological_process	GO:0071038	nuclear polyadenylation-dependent tRNA catabolic process
biological_process	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process	GO:0034473	U1 snRNA 3'-end processing
biological_process	GO:0034475	U4 snRNA 3'-end processing
biological_process	GO:0034476	U5 snRNA 3'-end processing
cellular_component	GO:0000177	cytoplasmic exosome (RNase complex)
cellular_component	GO:0000176	nuclear exosome (RNase complex)