Moc01g16380 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc01g16380
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase
Locationchr1: 10556866 .. 10560981 (+)
RNA-Seq ExpressionMoc01g16380
SyntenyMoc01g16380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATCTATTACTGTCACCTCCAAGGAATTGGTAAATGAATTAGACGAATTTGGAGTTGAGATAATTCCTCGAGATGCTAAAGCACTGTTAGCACAAGTCACAATTAAACCAACTCTAAGACAAAAGATTATTGATGCTCAGCAGACAGATGTGAAGTTGGTGGAATTTCGAAATTTGATTGGCAAGGGTGACTTTACATTATCCTTAGATTTTGCTTTACTTTTCCAAGATAGGTTATGTGTTCCTTCAGATCCTTCTATTAGAAGGGGGTGTTGGCAAAAGCCCATAACGCACCATTTTCTGTGCACCCTGGTAGCACAAGAATGTATCGAGGATTGAAACAACACTATTGGTGGCACAATATGAAGAAAGAGGTAGCGTTTTTTGTTAGTCAATGTTTGACTTGTCAACAAGTTAAAGCTTAGAAGCAAAAACCTACAAGACTATTGCAACCTCTGAGTGTTCCTGTATGGGAGTGGGAGAATATCTCAATGGATTTTATAGCCAATCTTCCAATGACTACTAAGGGCTATACTACTGTTTGGGTAATTGTGGATAGACTCACTAAATCAACACACTTTATACTTGGTCAAGCTACTTATATGGTGGAAAATGGGCAGATTTGTATATCAAAGAGATTGTAAGGCTTCATGGTGTTCCAGTTTCCATTATGTCTGATAGAGATGCTAGATTCACATCTTTTTTTTTGGAAAAGTTTGCAAAAGTCTATGGGTACTAAGCTGGAATTTAGTACAACTTTCCACCCCCAGACAGATGGGCAGACAGAACGGGTGAATCAGATTCTAGAGGATATGTTCAGAGCATGCGTCTTGGATTTCAAGGCAGTTGGGATTCACATCTACCCCGAGTGGAGTTTGCATACAATAATACTTTCCAAACTACTATTGGCATGGCTCCATTTGAAGCTCTATATGGAAAGAAATGTAGATCACCAGTCCATTGGGATGAAGTGGGAGAGCGAAATTTATTGGGACTTGAGTTAATTCAAACTAGGAATGAGGCTATTCAATTGATCCGTAAGCAAATGCAAACAGCTCAAAATAGACAAAAAAGCTATGCTGATAATAGGCGTAAGGATTTGGAATTCAAAGTAGGAGATCATGTGTTTCTTAAAGTACCTCCTATGAAAGGCGTTTTGCGATTCGGAAAGAAGAGGAAATTGAGTCCTTGATATGTTGGACCTTACAAGATTCTGGAACGTATTGGTCAAGTAGCATATCGATTAGCACCGCCACCAAATATGTCAGCGGTACATAATGTGCTCCATGTGTCGATGTTACGAAAGTATGTATCATCCCTTTTCCATATTTTAGATCCTGAGACACTTCAACTAAATGGGGATCTTTCTTATGAAGATAAAACTATATGCATCATTGCCAAAATGACGAGGAAGCTGAGAAATAGAGAGATTCGTATGATGAAAGTTATGTGTAGGAATCACTCAGTATCTGCAGCAACGTGTAAACACAAGAAAGATATTATGGAGAAATATCCCGACCTCCATTATGAATCGCAGGTAACTTTCGAAGACGAAAGTTCTTTTAAGGAGGGTAGATTGTAATGCCCCACATTATTTTAAAAGTATTTTCGTGACTTTATATTATTATTGTCATTCAGCTAAGCTAGTCAAATCTAATCAACTTTATGTCAATAAAATTTAATCCATCTTAGTTAATAAATGTAGGCTTCTCATGCTCTAACTAATTAACCACAAGTTAATTTTATTTACTTATAAAAAAAACTTACAACAAAATTTAGTGATTCATCTTATCAATGTTTAATTAATTATGTATGATAATCAAAAATAAATATGCATAAGAGATTAATAATATTACCAAGATTATAATTGTATTTAAGTAACAAAATTAGCAATAGTACTTTAGTAATTAGATAAATGTTGTGAATTATGGTAATTGTAATGGTGGAATTATTTGAGTATTTATAAATTTCCATACATTTTACCCAAAGTTTTATTATAAGGTAATTAACCAAGAAAAACCCCACATTACCTTTATTTTACTCTTTATTTTTCTACCTTAATTAAATTAACTTAATTGGGGGAATATAGAGAGTTTTACTTAACTCATAACCATGATTATGCAATATAACTCACCTTCCACTAACCATGATTAGACAATATAACCCACCTTCAACCCAAGAGACACATGTAGTAAATAAGTTAGTTAGGAAGACCAAAAAACTCTCACAATCCAATAAGCAATCGGCCATGCATGAGGAGAGAGAAGAAGTTTGTTTCATCTTCCAAGATTCATGTTTATTTCATCTTCCAAGATTCATGTTTGTTTCATCTTCCAAGTCATTCTCCTTAAGTTACCTATGTTTGTTTCGTTCTTTTTCCTCCAAGAACAACTCAAGCCAAATCTAAAAATTTCTCTCCATCATCCATCTTAGTACTGTAAATCATAACCTTAGAGGGAGAAATAGTTGTTTCTTCCAAGTTCCTTTAAGGTCGTTCATCGATTCTGCCTTTTCGGTAAGAAACGGTTTCTTTTAGTCTAGTTTTGGGAATGAATTTTCCCTAATAATTTTTATATTACCTAAGCATGTTCATATCCATTTTCTAAGGTTTCCATCATCATTTTAAGATCTCTTAGTTGCGGGAAAATTTTCTCATTCTATTTTTTACGGTAGAGAGGAAAGTGCACCACGGTAAGCATCATTCTTCCTTGTGTAAATTATTTTTAGGGTTCATTATTAGGATAAAATATGTATTGTTTAGGCCTCATTTTTGTTAATTTGAGATCTGAAGATTAGAATTAAAAATGTCCTAAAAATGTTCATAAAATTGCTTCAAAACGGTTTACGTTATTTTCATAGTTGTAACTTGTTTAGTATCAAATTTTGGATTGTTAAATTCTGAATTTTTGAGACCATGACCCGCACCTTTAAACTAGCCTAAAATGTATTTTAATATATTAAAATTGATTTTTATGATTAGTTTTACGTAGGGCTTAAAATTATGAAAACTAGTGCTATGTGTTTTCTCTAGTTTTTTTGTAAATTTGCAAAATCAGTAAATTATTTTTATGAATATTATAGTATAAAAATCAGAGGCTAATATGAAGATTTAAAATTACTCTTCACAAATTTAAATATTAATTTTATGATTATTATGGACTATGTTAATTATTATGGGATTTATACTCGTAGAATAATGAACCTATCTAATTATGAGAACTTATTGGAGAAAGCTTAGTTTAGGTAATTGAGTCCTAATTTTAGTTGTGTTAATTGTTATTAGGAAGGTTTAAGGAATTTCCTTTAATTTACGAAATTCAGGTAAGTGGATTCTATCATAAGTTACCGCCTTGTATGTTTTATTGTATTATTGGTTGACTGTGACTGACTTATGTTATTTGTTATCATGATTTGTTGTTGAATTATGTTATTCATGTTGCTTAAATATATTTTGTTATTGAATGGTCGTTGTGATTAAATTTGATGTATTGCAAAGCATGTTATGATTATGTGGCTTTATTGTGTTATTTTAAGTATATTCAATAGCAAAGCATGTTTAGGTAAAGCATGACATAATGTGTGATGCATTGCATTCGTAGTTAAGTTAGTAGTATTATGTGTCATGGATTTAGGTAAGATTAATGTTATGCATGAAATACCCAAATTAAGTAGTTATGTTATGCAGCTAAATGTATGATATGACATGTATGGTTTCTGCTAAGGTCTGGGCCCTAGGAAACAAATTAGTTCATGTTAATGGTATTTATGAGGGATAATTACCTTATAAATATTACATGCGGAATTGACGGTTATGGTATGGGGTATTTCTGCCTAGCATAACGCCAAGTTAAGGATTTAGATATGTAAGTTTATGCTAGCAAGCACAAGTATGTTAAGTTAAGTTTTTCGTTGATTTATATGTTAGGTTGAGGTATGCATGCATATAAGCATGATGTGTGTGTTTGAGCATGAAATGTTCCTTATGATGGGAAATACTTACTGGGTATTTTTATACTCATTCCACGTTGTTTCAATTTTTGTTTTACAGATAGTTATGCAGTTGTCGAGAACAACGTCGAGAATGACCTTGGCATTGACGAGGAGGAGATATGA

mRNA sequence

ATGACATCTATTACTGTCACCTCCAAGGAATTGGTAAATGAATTAGACGAATTTGGAGTTGAGATAATTCCTCGAGATGCTAAAGCACTGTTAGCACAAGTCACAATTAAACCAACTCTAAGACAAAAGATTATTGATGCTCAGCAGACAGATGTGAAGTTGGTGGAATTTCGAAATTTGATTGGCAAGGGTGACTTTACATTATCCTTAGATTTTGCTTTACTTTTCCAAGATAGTTATGCAGTTGTCGAGAACAACGTCGAGAATGACCTTGGCATTGACGAGGAGGAGATATGA

Coding sequence (CDS)

ATGACATCTATTACTGTCACCTCCAAGGAATTGGTAAATGAATTAGACGAATTTGGAGTTGAGATAATTCCTCGAGATGCTAAAGCACTGTTAGCACAAGTCACAATTAAACCAACTCTAAGACAAAAGATTATTGATGCTCAGCAGACAGATGTGAAGTTGGTGGAATTTCGAAATTTGATTGGCAAGGGTGACTTTACATTATCCTTAGATTTTGCTTTACTTTTCCAAGATAGTTATGCAGTTGTCGAGAACAACGTCGAGAATGACCTTGGCATTGACGAGGAGGAGATATGA

Protein sequence

MTSITVTSKELVNELDEFGVEIIPRDAKALLAQVTIKPTLRQKIIDAQQTDVKLVEFRNLIGKGDFTLSLDFALLFQDSYAVVENNVENDLGIDEEEI
Homology
[Close]
BLAST of Moc01g16380 vs. NCBI nr
Match: XP_022152032.1 (uncharacterized protein LOC111019841 [Momordica charantia])

HSP 1 Score: 96.3 bits (238), Expect = 1.6e-16
Identity = 50/54 (92.59%), Postives = 53/54 (98.15%), Query Frame = 0 

Query: 1  MTSITVTSKELVNELDEFGVEIIPRDAKALLAQVTIKPTLRQKIIDAQQTDVKL 55
          MTSITVTSKELVNEL+EFGV+IIP DAKALLAQVT+KPTLRQKIIDAQQTDVKL
Sbjct: 1  MTSITVTSKELVNELEEFGVKIIPGDAKALLAQVTVKPTLRQKIIDAQQTDVKL 54

[Close]
BLAST of Moc01g16380 vs. NCBI nr
Match: XP_022156880.1 (uncharacterized protein LOC111023714 [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-06
Identity = 33/82 (40.24%), Postives = 54/82 (65.85%), Query Frame = 0 

Query: 1   MTSITVTSKELVNELDEFGVEIIPRDAKALLAQVTIKPTLRQKIIDAQQTDVKLVEFRNL 60
           M   TV  + +++ELD   VE+   D  A+LA+++++PTLRQ++I AQ+ D  L +  ++
Sbjct: 406 MAPPTVPRRPVLDELDRSEVELAVEDVSAVLARLSVEPTLRQRVIAAQRGDPSLSKGFSM 465

Query: 61  IGKGDFTLSLDFALLFQDSYAV 83
           +G+GDF+L  D ALL+Q    V
Sbjct: 466 VGQGDFSLLGDTALLYQGRLCV 487

[Close]
BLAST of Moc01g16380 vs. NCBI nr
Match: XP_022157823.1 (uncharacterized protein LOC111024441 [Momordica charantia])

HSP 1 Score: 60.5 bits (145), Expect = 9.6e-06
Identity = 34/80 (42.50%), Postives = 55/80 (68.75%), Query Frame = 0 

Query: 13 NELDEFGVEIIPRDAKALLAQVTIKPTLRQKIIDAQQTDVKLVEFRNLIGKGDFTLSLDF 72
          +EL+   VE+   D  ALLA+++++P+LRQ+II AQ+ D  L +  +++G GDFTLS + 
Sbjct: 8  SELERLEVELTLDDVFALLARLSVEPSLRQRIIVAQKEDPSLAKGFSMVGHGDFTLSGET 67

Query: 73 ALLFQDSYAVVEN-NVENDL 92
          ALLF+    V ++ ++ NDL
Sbjct: 68 ALLFRGRLCVPKDYSLRNDL 87

[Close]
BLAST of Moc01g16380 vs. NCBI nr
Match: XP_022159308.1 (uncharacterized protein LOC111025717 [Momordica charantia])

HSP 1 Score: 59.3 bits (142), Expect = 2.1e-05
Identity = 32/82 (39.02%), Postives = 53/82 (64.63%), Query Frame = 0 

Query: 1   MTSITVTSKELVNELDEFGVEIIPRDAKALLAQVTIKPTLRQKIIDAQQTDVKLVEFRNL 60
           M   TV  + +++ELD   VE+   D  A+LA+++++ TLRQ++I A++ D  L +   +
Sbjct: 200 MAPPTVPRRPVLDELDRSEVELAVVDVSAVLARLSVELTLRQQVIAAEKGDPSLSKGFGI 259

Query: 61  IGKGDFTLSLDFALLFQDSYAV 83
           +G+GDF+LS D ALL+Q    V
Sbjct: 260 VGQGDFSLSRDTALLYQGRLCV 281

[Close]
BLAST of Moc01g16380 vs. NCBI nr
Match: XP_022156328.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111023249 [Momordica charantia])

HSP 1 Score: 58.5 bits (140), Expect = 3.6e-05
Identity = 31/76 (40.79%), Postives = 51/76 (67.11%), Query Frame = 0 

Query: 1    MTSITVTSKELVNELDEFGVEIIPRDAKALLAQVTIKPTLRQKIIDAQQTDVKLVEFRNL 60
            + S+     ++ +EL+   VE+   D  ALLA+++++P+LRQ+II AQ+ D  L +  ++
Sbjct: 993  VASLVAACSQMHSELECSEVELTVDDVSALLARLSVEPSLRQRIIVAQKEDPSLAKGFSM 1052

Query: 61   IGKGDFTLSLDFALLF 77
            +G GDFTLS + ALLF
Sbjct: 1053 VGHGDFTLSGEAALLF 1068

[Close]
BLAST of Moc01g16380 vs. ExPASy TrEMBL
Match: A0A6J1DF34 (uncharacterized protein LOC111019841 OS=Momordica charantia OX=3673 GN=LOC111019841 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 7.6e-17
Identity = 50/54 (92.59%), Postives = 53/54 (98.15%), Query Frame = 0 

Query: 1  MTSITVTSKELVNELDEFGVEIIPRDAKALLAQVTIKPTLRQKIIDAQQTDVKL 55
          MTSITVTSKELVNEL+EFGV+IIP DAKALLAQVT+KPTLRQKIIDAQQTDVKL
Sbjct: 1  MTSITVTSKELVNELEEFGVKIIPGDAKALLAQVTVKPTLRQKIIDAQQTDVKL 54

[Close]
BLAST of Moc01g16380 vs. ExPASy TrEMBL
Match: A0A6J1DRK1 (uncharacterized protein LOC111023714 OS=Momordica charantia OX=3673 GN=LOC111023714 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 7.2e-07
Identity = 33/82 (40.24%), Postives = 54/82 (65.85%), Query Frame = 0 

Query: 1   MTSITVTSKELVNELDEFGVEIIPRDAKALLAQVTIKPTLRQKIIDAQQTDVKLVEFRNL 60
           M   TV  + +++ELD   VE+   D  A+LA+++++PTLRQ++I AQ+ D  L +  ++
Sbjct: 406 MAPPTVPRRPVLDELDRSEVELAVEDVSAVLARLSVEPTLRQRVIAAQRGDPSLSKGFSM 465

Query: 61  IGKGDFTLSLDFALLFQDSYAV 83
           +G+GDF+L  D ALL+Q    V
Sbjct: 466 VGQGDFSLLGDTALLYQGRLCV 487

[Close]
BLAST of Moc01g16380 vs. ExPASy TrEMBL
Match: A0A6J1DUE8 (uncharacterized protein LOC111024441 OS=Momordica charantia OX=3673 GN=LOC111024441 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.6e-06
Identity = 34/80 (42.50%), Postives = 55/80 (68.75%), Query Frame = 0 

Query: 13 NELDEFGVEIIPRDAKALLAQVTIKPTLRQKIIDAQQTDVKLVEFRNLIGKGDFTLSLDF 72
          +EL+   VE+   D  ALLA+++++P+LRQ+II AQ+ D  L +  +++G GDFTLS + 
Sbjct: 8  SELERLEVELTLDDVFALLARLSVEPSLRQRIIVAQKEDPSLAKGFSMVGHGDFTLSGET 67

Query: 73 ALLFQDSYAVVEN-NVENDL 92
          ALLF+    V ++ ++ NDL
Sbjct: 68 ALLFRGRLCVPKDYSLRNDL 87

[Close]
BLAST of Moc01g16380 vs. ExPASy TrEMBL
Match: A0A6J1DYG1 (uncharacterized protein LOC111025717 OS=Momordica charantia OX=3673 GN=LOC111025717 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.0e-05
Identity = 32/82 (39.02%), Postives = 53/82 (64.63%), Query Frame = 0 

Query: 1   MTSITVTSKELVNELDEFGVEIIPRDAKALLAQVTIKPTLRQKIIDAQQTDVKLVEFRNL 60
           M   TV  + +++ELD   VE+   D  A+LA+++++ TLRQ++I A++ D  L +   +
Sbjct: 200 MAPPTVPRRPVLDELDRSEVELAVVDVSAVLARLSVELTLRQQVIAAEKGDPSLSKGFGI 259

Query: 61  IGKGDFTLSLDFALLFQDSYAV 83
           +G+GDF+LS D ALL+Q    V
Sbjct: 260 VGQGDFSLSRDTALLYQGRLCV 281

[Close]
BLAST of Moc01g16380 vs. ExPASy TrEMBL
Match: A0A6J1DQB9 (Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111023249 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.8e-05
Identity = 31/76 (40.79%), Postives = 51/76 (67.11%), Query Frame = 0 

Query: 1    MTSITVTSKELVNELDEFGVEIIPRDAKALLAQVTIKPTLRQKIIDAQQTDVKLVEFRNL 60
            + S+     ++ +EL+   VE+   D  ALLA+++++P+LRQ+II AQ+ D  L +  ++
Sbjct: 993  VASLVAACSQMHSELECSEVELTVDDVSALLARLSVEPSLRQRIIVAQKEDPSLAKGFSM 1052

Query: 61   IGKGDFTLSLDFALLF 77
            +G GDFTLS + ALLF
Sbjct: 1053 VGHGDFTLSGEAALLF 1068

The following BLAST results are available for this feature:
BLAST of Moc01g16380 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022152032.11.6e-1692.59uncharacterized protein LOC111019841 [Momordica charantia][more]
XP_022156880.11.5e-0640.24uncharacterized protein LOC111023714 [Momordica charantia][more]
XP_022157823.19.6e-0642.50uncharacterized protein LOC111024441 [Momordica charantia][more]
XP_022159308.12.1e-0539.02uncharacterized protein LOC111025717 [Momordica charantia][more]
XP_022156328.13.6e-0540.79LOW QUALITY PROTEIN: uncharacterized protein LOC111023249 [Momordica charantia][more]
BLAST of Moc01g16380 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc01g16380 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DF347.6e-1792.59uncharacterized protein LOC111019841 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A6J1DRK17.2e-0740.24uncharacterized protein LOC111023714 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1DUE84.6e-0642.50uncharacterized protein LOC111024441 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1DYG11.0e-0539.02uncharacterized protein LOC111025717 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DQB91.8e-0540.79Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111023249 PE=4 SV=1[more]
BLAST of Moc01g16380 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc01g16380.1Moc01g16380.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding