Moc01g15680 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc01g15680
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase
Locationchr1: 10070292 .. 10071224 (-)
RNA-Seq ExpressionMoc01g15680
SyntenyMoc01g15680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGAGAAAGTCCCGTCGAAGTTCAAGCTTCTAGCCATCAAATGGTACGATGGCTCGACGGATCCTATCGACCACCTAGATGGATATAGGGAATGGATGAACATTTACAAGGTGACAGAAGCCATCAGAAGCAGGGTGTTCTCCTTCACGTTGACTGGTTCAGCCCGCATATGGTTTTGACAATTGAAAATGAACTCAATCTCCTCCTTTAAAGAACTTGTAAGGGCGTTCGTCACACAGTTCGTTAGAGGATAGAACAGAAGTTGACCCGTGGCATATCTTCTCAATGTAGAACAGAAGTCAAGAGAAAGCCTCAAAGAATATGTGGCTTGATTCAACAAGGAGAAGTTGCAGGGCAAGGGTTGACAGAGTGTCTTTTCTCGACTTCATGTCTGGTGTGGAAGACAAAAAGTTGTTATTCTTCTTTGGAAAAAAGACCTCAGCTACCTTTTCATAAGCATTAAATCGCGCCAAAAAATATATAAGTGTAGGAGAACTACTCTATTTAAAGCGGGACTATGACAGAAAGCATAGTCAAGCAAAGCATAACGTATAGAGAGACAAGTCCAGAGAAAAGCAATCTTGATCAAAGTGGGGAAAAACCTACAGTACGCAGGATCAACCGGGTCAAAGGGACCCTCCAAAAGGGTTCAAAAAATATATCTCGACTACGGTTCCACTTGAGCAGGTTCTAATAAGGGACAAGAAGCTATTTCGATGGCCTGGAAGATTAAAGCATCATCTCATAAGAGGCCTAAAGGAAGATATTGCCTCTTCCATCGAGATCACGATTATTCAACACAGGACTGTTATGATCTCAAAGAGGAAGTAGAAGATCTCATTCGAGAAGGCCTCCTCAAAGAATTCGTGAAGGACTCTAAGGCAACTCTGAACAGCGACCAGGACAACAAGTCTCCTCCAGGGAGATAA

mRNA sequence

ATGAAGGAGAAAGTCCCGTCGAAGTTCAAGCTTCTAGCCATCAAATGGTACGATGGCTCGACGGATCCTATCGACCACCTAGATGGATATAGGGAATGGATGAACATTTACAAGAACAGAAGTCAAGAGAAAGCCTCAAAGAATATGTGGCTTGATTCAACAAGGAGAAGTTGCAGGGCAAGGGTTGACAGAGTGTCTTTTCTCGACTTCATGTCTGGTTCTAATAAGGGACAAGAAGCTATTTCGATGGCCTGGAAGATTAAAGCATCATCTCATAAGAGGCCTAAAGGAAGATATTGCCTCTTCCATCGAGATCACGATTATTCAACACAGGACTGTTATGATCTCAAAGAGGAAGTAGAAGATCTCATTCGAGAAGGCCTCCTCAAAGAATTCGTGAAGGACTCTAAGGCAACTCTGAACAGCGACCAGGACAACAAGTCTCCTCCAGGGAGATAA

Coding sequence (CDS)

ATGAAGGAGAAAGTCCCGTCGAAGTTCAAGCTTCTAGCCATCAAATGGTACGATGGCTCGACGGATCCTATCGACCACCTAGATGGATATAGGGAATGGATGAACATTTACAAGAACAGAAGTCAAGAGAAAGCCTCAAAGAATATGTGGCTTGATTCAACAAGGAGAAGTTGCAGGGCAAGGGTTGACAGAGTGTCTTTTCTCGACTTCATGTCTGGTTCTAATAAGGGACAAGAAGCTATTTCGATGGCCTGGAAGATTAAAGCATCATCTCATAAGAGGCCTAAAGGAAGATATTGCCTCTTCCATCGAGATCACGATTATTCAACACAGGACTGTTATGATCTCAAAGAGGAAGTAGAAGATCTCATTCGAGAAGGCCTCCTCAAAGAATTCGTGAAGGACTCTAAGGCAACTCTGAACAGCGACCAGGACAACAAGTCTCCTCCAGGGAGATAA

Protein sequence

MKEKVPSKFKLLAIKWYDGSTDPIDHLDGYREWMNIYKNRSQEKASKNMWLDSTRRSCRARVDRVSFLDFMSGSNKGQEAISMAWKIKASSHKRPKGRYCLFHRDHDYSTQDCYDLKEEVEDLIREGLLKEFVKDSKATLNSDQDNKSPPGR
Homology
[Close]
BLAST of Moc01g15680 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 100.9 bits (250), Expect = 9.9e-18
Identity = 89/303 (29.37%), Postives = 109/303 (35.97%), Query Frame = 0 

Query: 1   MKEKVPSKFKLLAIKWYDGSTDPIDHLDGYREWMNIYKNRSQEK---------ASKNMWL 60
           M+EKVP KFKL  +K +D +TDP+DHLD YREWM+IY      +          S  +W 
Sbjct: 185 MREKVPPKFKLPTVKQFDXTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWF 244

Query: 61  DSTRRS--------------------CRAR------------------------------ 120
              +R                     CR+R                              
Sbjct: 245 RQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQRTTESLRDYVARFNEEKLQV 304

Query: 121 ---VDRVSFLDFMSG--------------SNKGQEAISMA-------------------- 150
               D VS L FMSG               N   EA+S A                    
Sbjct: 305 EGLTDAVSLLAFMSGVRDEHLSFSFGKRTPNTFSEALSRAQRYMSAGEFFYSKREPDGKR 364

[Close]
BLAST of Moc01g15680 vs. NCBI nr
Match: XP_022158093.1 (uncharacterized protein LOC111024662 [Momordica charantia])

HSP 1 Score: 94.7 bits (234), Expect = 7.1e-16
Identity = 44/63 (69.84%), Postives = 53/63 (84.13%), Query Frame = 0 

Query: 87  IKASSHKRPKGRYCLFHRDHDYSTQDCYDLKEEVEDLIREGLLKEFVKDSKATLNSDQDN 146
           +KA  +KR K RYCLFHRDH ++TQDC+DLKEEVE LIR G LKE+V+D KATLNS+ D+
Sbjct: 1   MKAHPNKRSKERYCLFHRDHGHATQDCFDLKEEVEGLIRRGYLKEYVEDPKATLNSENDD 60

Query: 147 KSP 150
           KSP
Sbjct: 61  KSP 63

[Close]
BLAST of Moc01g15680 vs. NCBI nr
Match: XP_022151636.1 (uncharacterized protein LOC111019544 [Momordica charantia])

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-15
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 0 

Query: 76  KGQEAISMAWKIKASSHKRPKGRYCLFHRDHDYSTQDCYDLKEEVEDLIREGLLKEFVKD 135
           K Q       ++KAS +KR KGRYCLFHRDH ++T DC+DLKEEVE  I +G LKE+++D
Sbjct: 4   KDQRLFKWPERMKASPNKRSKGRYCLFHRDHGHATHDCFDLKEEVEGFIPKGYLKEYMED 63

Query: 136 SKATLNSDQDNKSP 150
            KAT NS+ DNKSP
Sbjct: 64  PKATQNSENDNKSP 77

[Close]
BLAST of Moc01g15680 vs. NCBI nr
Match: XP_022159192.1 (uncharacterized protein LOC111025612 [Momordica charantia])

HSP 1 Score: 92.8 bits (229), Expect = 2.7e-15
Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 0 

Query: 76  KGQEAISMAWKIKASSHKRPKGRYCLFHRDHDYSTQDCYDLKEEVEDLIREGLLKEFVKD 135
           K Q  +     +KA  +KR KGRYCLFHRDH ++T DC+DLKEEVE LIR+G LKE+V D
Sbjct: 99  KDQRLLKWPETMKAPPNKRSKGRYCLFHRDHGHATLDCFDLKEEVEGLIRKGYLKEYVDD 158

Query: 136 SKATLNSDQDNKSP 150
            KAT N + DNKSP
Sbjct: 159 LKATPNRENDNKSP 172

[Close]
BLAST of Moc01g15680 vs. NCBI nr
Match: XP_022150028.1 (uncharacterized protein LOC111018300 [Momordica charantia])

HSP 1 Score: 92.4 bits (228), Expect = 3.5e-15
Identity = 42/74 (56.76%), Postives = 56/74 (75.68%), Query Frame = 0 

Query: 76  KGQEAISMAWKIKASSHKRPKGRYCLFHRDHDYSTQDCYDLKEEVEDLIREGLLKEFVKD 135
           K Q  +    ++ A   KR KGRYCLFHRDHD++TQDC+DLK+EV++LI+ G LKE+V+D
Sbjct: 12  KYQRLLQWPERMNAPQSKRSKGRYCLFHRDHDHATQDCFDLKKEVKELIQRGYLKEYVED 71

Query: 136 SKATLNSDQDNKSP 150
            KAT N + D+KSP
Sbjct: 72  PKATQNGENDSKSP 85

[Close]
BLAST of Moc01g15680 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.8e-18
Identity = 89/303 (29.37%), Postives = 109/303 (35.97%), Query Frame = 0 

Query: 1   MKEKVPSKFKLLAIKWYDGSTDPIDHLDGYREWMNIYKNRSQEK---------ASKNMWL 60
           M+EKVP KFKL  +K +D +TDP+DHLD YREWM+IY      +          S  +W 
Sbjct: 185 MREKVPPKFKLPTVKQFDXTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWF 244

Query: 61  DSTRRS--------------------CRAR------------------------------ 120
              +R                     CR+R                              
Sbjct: 245 RQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQRTTESLRDYVARFNEEKLQV 304

Query: 121 ---VDRVSFLDFMSG--------------SNKGQEAISMA-------------------- 150
               D VS L FMSG               N   EA+S A                    
Sbjct: 305 EGLTDAVSLLAFMSGVRDEHLSFSFGKRTPNTFSEALSRAQRYMSAGEFFYSKREPDGKR 364

[Close]
BLAST of Moc01g15680 vs. ExPASy TrEMBL
Match: A0A6J1DV51 (uncharacterized protein LOC111024662 OS=Momordica charantia OX=3673 GN=LOC111024662 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.4e-16
Identity = 44/63 (69.84%), Postives = 53/63 (84.13%), Query Frame = 0 

Query: 87  IKASSHKRPKGRYCLFHRDHDYSTQDCYDLKEEVEDLIREGLLKEFVKDSKATLNSDQDN 146
           +KA  +KR K RYCLFHRDH ++TQDC+DLKEEVE LIR G LKE+V+D KATLNS+ D+
Sbjct: 1   MKAHPNKRSKERYCLFHRDHGHATQDCFDLKEEVEGLIRRGYLKEYVEDPKATLNSENDD 60

Query: 147 KSP 150
           KSP
Sbjct: 61  KSP 63

[Close]
BLAST of Moc01g15680 vs. ExPASy TrEMBL
Match: A0A6J1DF96 (uncharacterized protein LOC111019544 OS=Momordica charantia OX=3673 GN=LOC111019544 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.9e-16
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 0 

Query: 76  KGQEAISMAWKIKASSHKRPKGRYCLFHRDHDYSTQDCYDLKEEVEDLIREGLLKEFVKD 135
           K Q       ++KAS +KR KGRYCLFHRDH ++T DC+DLKEEVE  I +G LKE+++D
Sbjct: 4   KDQRLFKWPERMKASPNKRSKGRYCLFHRDHGHATHDCFDLKEEVEGFIPKGYLKEYMED 63

Query: 136 SKATLNSDQDNKSP 150
            KAT NS+ DNKSP
Sbjct: 64  PKATQNSENDNKSP 77

[Close]
BLAST of Moc01g15680 vs. ExPASy TrEMBL
Match: A0A6J1DZ52 (uncharacterized protein LOC111025612 OS=Momordica charantia OX=3673 GN=LOC111025612 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.3e-15
Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 0 

Query: 76  KGQEAISMAWKIKASSHKRPKGRYCLFHRDHDYSTQDCYDLKEEVEDLIREGLLKEFVKD 135
           K Q  +     +KA  +KR KGRYCLFHRDH ++T DC+DLKEEVE LIR+G LKE+V D
Sbjct: 99  KDQRLLKWPETMKAPPNKRSKGRYCLFHRDHGHATLDCFDLKEEVEGLIRKGYLKEYVDD 158

Query: 136 SKATLNSDQDNKSP 150
            KAT N + DNKSP
Sbjct: 159 LKATPNRENDNKSP 172

[Close]
BLAST of Moc01g15680 vs. ExPASy TrEMBL
Match: A0A6J1D8C9 (uncharacterized protein LOC111018300 OS=Momordica charantia OX=3673 GN=LOC111018300 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.7e-15
Identity = 42/74 (56.76%), Postives = 56/74 (75.68%), Query Frame = 0 

Query: 76  KGQEAISMAWKIKASSHKRPKGRYCLFHRDHDYSTQDCYDLKEEVEDLIREGLLKEFVKD 135
           K Q  +    ++ A   KR KGRYCLFHRDHD++TQDC+DLK+EV++LI+ G LKE+V+D
Sbjct: 12  KYQRLLQWPERMNAPQSKRSKGRYCLFHRDHDHATQDCFDLKKEVKELIQRGYLKEYVED 71

Query: 136 SKATLNSDQDNKSP 150
            KAT N + D+KSP
Sbjct: 72  PKATQNGENDSKSP 85

The following BLAST results are available for this feature:
BLAST of Moc01g15680 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022158830.19.9e-1829.37uncharacterized protein LOC111025293 [Momordica charantia][more]
XP_022158093.17.1e-1669.84uncharacterized protein LOC111024662 [Momordica charantia][more]
XP_022151636.11.2e-1559.46uncharacterized protein LOC111019544 [Momordica charantia][more]
XP_022159192.12.7e-1560.81uncharacterized protein LOC111025612 [Momordica charantia][more]
XP_022150028.13.5e-1556.76uncharacterized protein LOC111018300 [Momordica charantia][more]
BLAST of Moc01g15680 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc01g15680 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DWY04.8e-1829.37uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DV513.4e-1669.84uncharacterized protein LOC111024662 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1DF965.9e-1659.46uncharacterized protein LOC111019544 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A6J1DZ521.3e-1560.81uncharacterized protein LOC111025612 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1D8C91.7e-1556.76uncharacterized protein LOC111018300 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
BLAST of Moc01g15680 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc01g15680.1Moc01g15680.1mRNA