Moc01g15510 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc01g15510
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionU11/U12 small nuclear ribonucleoprotein 48 kDa protein
Locationchr1: 9857427 .. 9863683 (-)
RNA-Seq ExpressionMoc01g15510
SyntenyMoc01g15510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTTCGTCGTGTTAGAGTGGGTCGCTGGACTCTTGGTCGTCGTCAGTCAATCACCGGAGGATGGTCTCAAGGCAGCAATGGAGGTCGTGAGGTGTGCACCAGAGTCTTGTTGTGTGTTGGTTCTATTGAACCGCCTTCAGAGACTAAGGGAAAAAAATAAAAAATAAAAAATAAAAATTTTTCTTTACCCAAATCATTCTTCTGTGTGCTCTCTGTTTTTTTTCCACTCCTCTTTGTGTTGTGTGCCCTTTAAATATACCAAAAAAATAACAGTAACATGCGTGAGTGAAGAAAAAGAGGGAAGGGAAAGCGTTTGGTTTTGACGAAGGAAAAACGGGAGGAAAAACAAAATGTTTATTTTTAACCAAAACATAATCTAAATTTCTTTATTCAAAACAAAATTATATAAATCAAATCAAATCTTTTTATTTCTTTTATTTTAATAATAAATCAAATTCTTTAAAACAAAATCTATTTTTTTTTAATTTAATTTAAACTTTAGCTTATAACCAATAATAAAGTAATCCTATAATATTTAATAAAATAAAAATTAAATAATTAAAACTAAAACTAAAATAAAGCCGAACCAAATACGGTGTCTACAGCTTGCCCCCCTTTGTGTATCCTTTTAGAACTAAAAGGGTAGACAAAGGCAAAAGACAAAGTATTTGGGAAGGCGAAAATTTTATTCAGACAAGACAAGATAGAGATGGACCTAACTGGACACTAGGCGGGATCCCGACATGCAAAGAACCTCGTACTTGATACAAGCCTTAACCTCGATCTTGGATTGGGTTTGATTTAATTGACATGATAAGTGCGATGGACCTGGCTTGACACAGGCTTCGACCTCAATCTTGGATCGAGTTCGATTTAACCAAATGATAAAATGCAATAGACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGGATCGGGTTAGATTTAACCGAATGATAAAATGCAACGAACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGGATCAGGTTCGATTTAACCGAATGATAAAATGCAACGGACCTGGCTTTAATAACAGGCTTCGACCTCGACTTGGATCGGGTTCGATTTAACCGAATGAGAAAATACAACGGACCTGGCTTTAACAACAGGCTTAGACCTCGACTTGGATCGGGTTCGATTTAACCGAATGATAAAATGCAAAGGACCTGGCTTTAACAACAGGCTTCAACCTCGACTTGGATCGGGTTCGATTTAACCGAATGATAAAATGCAAAGGACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGGATCGGGTTCGATTTAACCGAATGATAAAATGCGACGGACCTAGCTTTAACACAGGCTTCGACCTCGACTTGGATCGGGTTCGATTTAACCGATTGATAAAATGCGACGGACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGAATCGGGTTCGATTTAACCAAATGATAAAATGCGACGGACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGGATCGGGTTCGATTTAGCCGAAAGATAAAATGCAAAGGACCTGGCTTTAATAACAGACTTCGACCTCGACTTGGATCAGGTTCGATTTAACCGAATGATAAAATACGACGGACCTGGCTTTAACAACAGGCTTCGACCTCGATTTGGATCGGGTTCGATTTAACCAAATGATAAAATGCGACGGACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGGATCGGGTTCGATTTAACCGAATGAGAAAATACAACGGACCTGGCTTTAACAACAGGCTTCGACCTCGACTTAGATCGGGTTCGATTTAACCAAATGATAAAATGCAACGGACCTGGCTTTAACAATAGGCTTCGACCTCGACTTGGATCGGGTTCGATTTAACCGAATGATAAAATGCAAAGGACCTGGCTTTAACAACAGGCTTCGACCTTGACTTGGATCGGGTTCGATTTAACTGAATGATAAAATGCGACGGACCTAGCTTTAACACAGGCTTCGACCTCGACTTGGATCGGGTTCGATTTAACCGAATGATAAAATGCGACGAACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGGATCGGGTTCGATTTAACCGAAGATAAATGTTTGATCACAAAAATTACCAAGCTTACGAGCTCGGCTCGGACGGAATTATGACCTTAAGGATGAGCTGAATTTTGCTGAGCAGGAGACCGGTAAGAGAAAACACTTCGTCGCCCAAGTCAGAAAGAATTCGAGTTGTATTATAGAGAAAATACAGTGTTTGCATACCTTTGATAGAGGCAAATGGTTTCTATATATAGGCAAGGTCTCTGACAGGATTCTTGATAAGGCCTCAACGGCCCATTAAGGTAAGCTTGAATCACGACATGCTATTGTGGAGTTTGTCGGAATATGAGGCTAAGCGAGACACATCTAGGTCAGTTCAAACAAATAATGGGAACGAGACCAAAGGAGATCTTGGTTGGCTCTGTCATAATGGGCGTTGGCTCGGTAGACAGTCGAAATACCAAGGAGATAAAACTTGGCTTCACAAATTTAAAGTCATGCGTGTTTTTCTGTTACAATAAGAAAATGCCACGTGTGAGGTAGAAAACTGGCTCCAACAGACTAAAATGCAATTTCTAAAAAAAAAGCTGAAGGGATTTATTTACTTGAAAGCCCTTTACCTAAGTGCAGGGTTTAGAGATGCTTTTAAACTTGCTAAGTGCATGAGATATGCACTTGACGCATGACGATAAGACTAAAACCACGTGTTCATGCTAATGCGAACTTCCAATCGCAGTATCGAGTACTTATCGTAGCGAAATTCTAATATCCGAGCGAGAGGTTAGACCAATCCAATTCATTCTAACAAACCAACACTACACTACGTAGATACCTGTGCAGGTGAGAAGTTGATCGGTCTTAGAAACGCCTGTAGCGGCATGAGGAGTCAACGACTGGAATGCCTAAAGATCATAAAGTATGGAATAGGAATGGATGCGGTGGAAAGCTATACTCATATTAAATTGCGTCCCCTTATAAATGAAAGAGCTCCTGCTAGAAATAGCTAATGAAAATTGGGTACCCTGTCGCTAGCAATTGAGTGTGGCTTATCAACTAGCTCTAACTCTAAAGGCCGAGGAAAAGCTAAAAAGATCAGCAGGAGGCTCCACGAGAAGCTGCTGCGCGATCTCTGGTGCAATTATCTTATGACAGATGGGTGAACCTACAAATGTGTATTACCCCAATGTCATGAATGACAAATAATATTTTATTTATTACTTCCATTTATTCTTATCACTTGAAAAATGTGTGATATCATATGATTTGCTTTTTATTTAGCTTAACCAATGAATTTGATCTTCAATGCCTGATGCAATAATGTATATGCCTAATGAAAGCTAGAATGCAACATATATGCATGATACTAATGGAATGTGATTATGAATGCCCAATGCATGATACTTAAAATTTCATAATCTAACCATGATATGAAAACAATTTTTTTTTTTTTGAAGAATATGCATGTAAGTGAAGTGAATGCATGATTTGTGAAAATATGGTTGAGAGAACAAGAAGTTTTTCCATATTTTGCAAAGATATTATCTTTTTTGTCTACTCTCATCCTTCTTATTAGCAATTATTTAGCAAAGAATCAAATGAGAAAAGGTAATATTGACATTGGAAGAAACACATCAATTGTTGATTTTTTTCCTTTTTTTTTTAATGAATGCCTTCACTCGATAAGAGATATACAAGGTAACTTATCAACTATATCAGGTTTGGAAGGGAATTCTTTTGTAGAGGTATCACATGTGCCAGTTTAGAGAACTATTAAAAAGTAATCCATAGCATTATACATCTTGCTTGATTAAACTGCTTCATAAACTTAGCCTTGTAGTTGACAAGAATGTTGGATACAAGAAAATAGATCTGGCTTTATGAACAAACGAGGATGGAAATCATAATTTTCCATCAAGCTTAACGATGAGAAAAGTCAGCGAGCTTCCTTTTTAAAGAAAAGGAAACCAAGAGTTCAATGATATTTTGTCAAATCTCTCGAACAGTAAGAGACTAGAATATGTTTTTTTAAAAGCTTTGGAGAGAGATTAGAGCATGATCAAATGAATAGAAGAATAGAAATGATTCAATTTCTTGGGATAGATGACCTTGAGAAAGGGTTGCGTAACTCCCCAAGAGTTCATCTCGTGTATCTTGCCCCTTTTTTAGTTTAGCTCAAGATCTTTGATAAAAATATTCTTTCTCGCCTTTAGCTTCACTTTATGGTTATGTTGCTGCAACCCACTTTTTGAATGTAAGGCTCTCTTTTAACCTTAGCTCCGAAGTGCAGTTGATGTAGTCCACTTTTGAATGCAAATGACCTCTTTTTTTCTCAAAGTGAAGAAGATTTTGTGCGAGGAGAAATGTAACAATATCAGTCTGAAGATGACCTTTGCCTCAAAGCTTTGTATAATGTAGTTACAAATTTGCCTCGACGTAGCATTGCTCAACTTTGCCCCAGTCTGAAGATTTGCAAAGAAGATTGCTCCAATCATTGAACTAAAGCACTGTCATGGCCTTAGACGAAGGTTTTTTTTTCTTTTTTTCTTTTTTTTTTCTGCCAGACACAACCCTTTTATAAAAAAGGGTGCAATCACATATAAAAAGTTGATCATGCGTAGTCACTTTTTGCAACTCTAATTGCTGTTCCAAATTATGTCTTTGCTACTGCTCCAGTAAAAACTGTTCTCAAACGAAACTTATCAAAGGAGACTGAGATCTTGAGACTATTGGTCAGGTCGCTAACTTCCCAATTCTCAAAATCACTATCATCGGTCTTGGAATCACTTTTACTCAAAAGAAGAAAGCAGACGAAGGATTAAGATAGAATAACAATATAAAGTGAAAGAAGGAAGTCAGAGTAGGGAAATTTTGAGCAACTACAAGTACCAATTCATGAAGCAATCAATCATAAGAGCCCAATGTTATTTTATTACTTTCAAAGTTCTTAGGGGAACACTAGGTGGATAATTTTGGATATTTACCATGCAATTAGATGTGACAGGTTTGGTAAAAGACCTTTATGGTAAGTAGGCAAATATTGATATTCCTCACAAAAATTGTATGTGACGGGCTGAGCAAATGGTCAACTCTCAATGTTGACTATATTTACCATATATCGGTAAGCTAGGCTCAAGGTTGATTAGGCTTAAAGCAGGCTAAGCTCAAGGTTTTACAGGGAGTGAGTAATTTTGGTTCCTCACCTCAATAGGCATGCTTGCCCCAGTATGAAATTTGATGGTTTGCTGGTTAGCACATGAGAAGCAATAGGAAGACCAAGACAAAATTGGTTTGAGTTACGGATTTAGCCCGACAACAAAGTCCGGAAAAATGGTTGAGTTTTGAAAAAGATTATATCTCACTGAGGACCTTGAAGGCATTCACATTTTCATTTTTTTCCCATCTTTCATTGCTTTTTTCCACTTCTTTTTTGTTTATTTTTCCACTTTTTCCCGTTTCCTCCAAGTGACTTACAATGATTGTTTGATTCTTGCTAAAGTCTCAACTAACAAGAATGATAAGAGTAGACCATATTAAAAATATTATTGAGAAATTTCAAAACATGTAATTTCCTTTTTATCGAGAGCCTTTCAAAGAAAACATTTTTTTTTTGTTTTTCAACCAATGATATGATATGAGTGATGCATGATTGAATGTATGACTTTGATTTTACTTATTTTTTTTTTTAAGAAAAATAGCTCAATGTCCACACACTCACATTCTTTTTTACAAGTACTTAGCTAAATCATGGGTGACTAAAGCTTCATTGTCGTTTTAACACTAGCAAGCAATCTCAAAGATGACTTCAAAGCAGAAATAAACTTTATTGAGAATGCAAAGCAATAGGTCAACATTGATTTTGATAATCTTGTACACTCATGATTCTAGTGCTTCATGTGTTGACCATCTTCCTTTGAAAACTTTAGCCATCCTGCCTTCATTAGAACTTGCACTTTATGCTTTAGTGAAGTACAGTTCTCAGTTGAATGACCTACAGCTCCTGCATGGTAATCACAGTGGACTTGCGGGTCGTACCACTTTGGATAAAGTGGCTGCAATTGTTCTACAGGTACCGGAGTTAGTAGATGACTTTGAAATAATTCTGATAACAGCTCGGTATAGGATATTGGGATTGGATGAAAACTCTCTTGCTTTAGTTGCCTCCTACTCTTATGATCGTTAG

mRNA sequence

ATGTCGTTCGTCGTGTTAGAGTGGGTCGCTGGACTCTTGGTCGTCGTCAGTCAATCACCGGAGGATGGTCTCAAGGCAGCAATGGAGGTCGTGAGGAGACCGGCAAGGTCTCTGACAGGATTCTTGATAAGGCCTCAACGGCCCATTAAGGTAAGCTTGAATCACGACATGCTATTGTGGAGTTTGTCGGAATATGAGGCTAAGCGAGACACATCTAGTGCTTCATGTGTTGACCATCTTCCTTTGAAAACTTTAGCCATCCTGCCTTCATTAGAACTTGCACTTTATGCTTTAGTGAAGTACAGTTCTCAGTTGAATGACCTACAGCTCCTGCATGGTAATCACAGTGGACTTGCGGGTCGTACCACTTTGGATAAAGTGGCTGCAATTGTTCTACAGGTACCGGAGTTAGTAGATGACTTTGAAATAATTCTGATAACAGCTCGGTATAGGATATTGGGATTGGATGAAAACTCTCTTGCTTTAGTTGCCTCCTACTCTTATGATCGTTAG

Coding sequence (CDS)

ATGTCGTTCGTCGTGTTAGAGTGGGTCGCTGGACTCTTGGTCGTCGTCAGTCAATCACCGGAGGATGGTCTCAAGGCAGCAATGGAGGTCGTGAGGAGACCGGCAAGGTCTCTGACAGGATTCTTGATAAGGCCTCAACGGCCCATTAAGGTAAGCTTGAATCACGACATGCTATTGTGGAGTTTGTCGGAATATGAGGCTAAGCGAGACACATCTAGTGCTTCATGTGTTGACCATCTTCCTTTGAAAACTTTAGCCATCCTGCCTTCATTAGAACTTGCACTTTATGCTTTAGTGAAGTACAGTTCTCAGTTGAATGACCTACAGCTCCTGCATGGTAATCACAGTGGACTTGCGGGTCGTACCACTTTGGATAAAGTGGCTGCAATTGTTCTACAGGTACCGGAGTTAGTAGATGACTTTGAAATAATTCTGATAACAGCTCGGTATAGGATATTGGGATTGGATGAAAACTCTCTTGCTTTAGTTGCCTCCTACTCTTATGATCGTTAG

Protein sequence

MSFVVLEWVAGLLVVVSQSPEDGLKAAMEVVRRPARSLTGFLIRPQRPIKVSLNHDMLLWSLSEYEAKRDTSSASCVDHLPLKTLAILPSLELALYALVKYSSQLNDLQLLHGNHSGLAGRTTLDKVAAIVLQVPELVDDFEIILITARYRILGLDENSLALVASYSYDR
Homology
[Close]
BLAST of Moc01g15510 vs. NCBI nr
Match: XP_022151686.1 (U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Momordica charantia])

HSP 1 Score: 141.7 bits (356), Expect = 5.7e-30
Identity = 77/98 (78.57%), Postives = 83/98 (84.69%), Query Frame = 0 

Query: 72  SSASCVDHLPLKTLAILPSLELALYALVKYSSQLNDLQLLHGNHSGLAGRTTLDKVAAIV 131
           SSASC+ HLPLKTLAILPSLELA+YALVKYSSQLNDLQLL GNHSGLAGRTT DKV AI 
Sbjct: 18  SSASCIHHLPLKTLAILPSLELAIYALVKYSSQLNDLQLLRGNHSGLAGRTTFDKVVAIA 77

Query: 132 LQVPELVDDFEIILITARYRILGLDENSLALVASYSYD 170
           L+V EL+D  EII IT + RILG D +SLALVAS  YD
Sbjct: 78  LRVRELIDYLEIIGITTQCRILGSDGSSLALVASDYYD 115

[Close]
BLAST of Moc01g15510 vs. NCBI nr
Match: XP_022144020.1 ((-)-germacrene D synthase-like [Momordica charantia])

HSP 1 Score: 89.4 bits (220), Expect = 3.3e-14
Identity = 56/98 (57.14%), Postives = 61/98 (62.24%), Query Frame = 0 

Query: 72  SSASCVDHLPLKTLAILPSLELALYALVKYSSQLNDLQLLHGNHSGLAGRTTLDKVAAIV 131
           SSAS VDHLPLKTLAI+PSLELALYALVKYSSQLNDLQLLHGNHS               
Sbjct: 18  SSASGVDHLPLKTLAIMPSLELALYALVKYSSQLNDLQLLHGNHS--------------- 77

Query: 132 LQVPELVDDFEIILITARYRILGLDENSLALVASYSYD 170
                     E  ++    RILG +E+SL LV S  YD
Sbjct: 78  ----------EHAVVPLWIRILGSNESSLTLVVSDYYD 90

[Close]
BLAST of Moc01g15510 vs. ExPASy TrEMBL
Match: A0A6J1DFF2 (U11/U12 small nuclear ribonucleoprotein 48 kDa protein OS=Momordica charantia OX=3673 GN=LOC111019602 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.7e-30
Identity = 77/98 (78.57%), Postives = 83/98 (84.69%), Query Frame = 0 

Query: 72  SSASCVDHLPLKTLAILPSLELALYALVKYSSQLNDLQLLHGNHSGLAGRTTLDKVAAIV 131
           SSASC+ HLPLKTLAILPSLELA+YALVKYSSQLNDLQLL GNHSGLAGRTT DKV AI 
Sbjct: 18  SSASCIHHLPLKTLAILPSLELAIYALVKYSSQLNDLQLLRGNHSGLAGRTTFDKVVAIA 77

Query: 132 LQVPELVDDFEIILITARYRILGLDENSLALVASYSYD 170
           L+V EL+D  EII IT + RILG D +SLALVAS  YD
Sbjct: 78  LRVRELIDYLEIIGITTQCRILGSDGSSLALVASDYYD 115

[Close]
BLAST of Moc01g15510 vs. ExPASy TrEMBL
Match: A0A6J1CQG9 ((-)-germacrene D synthase-like OS=Momordica charantia OX=3673 GN=LOC111013811 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.6e-14
Identity = 56/98 (57.14%), Postives = 61/98 (62.24%), Query Frame = 0 

Query: 72  SSASCVDHLPLKTLAILPSLELALYALVKYSSQLNDLQLLHGNHSGLAGRTTLDKVAAIV 131
           SSAS VDHLPLKTLAI+PSLELALYALVKYSSQLNDLQLLHGNHS               
Sbjct: 18  SSASGVDHLPLKTLAIMPSLELALYALVKYSSQLNDLQLLHGNHS--------------- 77

Query: 132 LQVPELVDDFEIILITARYRILGLDENSLALVASYSYD 170
                     E  ++    RILG +E+SL LV S  YD
Sbjct: 78  ----------EHAVVPLWIRILGSNESSLTLVVSDYYD 90

The following BLAST results are available for this feature:
BLAST of Moc01g15510 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022151686.15.7e-3078.57U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Momordica charantia][more]
XP_022144020.13.3e-1457.14(-)-germacrene D synthase-like [Momordica charantia][more]
BLAST of Moc01g15510 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc01g15510 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DFF22.7e-3078.57U11/U12 small nuclear ribonucleoprotein 48 kDa protein OS=Momordica charantia OX... [more]
A0A6J1CQG91.6e-1457.14(-)-germacrene D synthase-like OS=Momordica charantia OX=3673 GN=LOC111013811 PE... [more]
BLAST of Moc01g15510 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc01g15510.1Moc01g15510.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding