Moc01g15360 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc01g15360
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRNase H domain-containing protein
Locationchr1: 9696054 .. 9699398 (+)
RNA-Seq ExpressionMoc01g15360
SyntenyMoc01g15360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGATTCTCCATGGCTTGTGGATGGTGATTTAAATGCAATTCTTTGGCACAATGAGACCTCTGCCCCAAGTTGCAATAATGGCAATCTCATTTCAGACTTCCGATCAGCTCTTGATGCTTGTTCTCTTTTTGATATAGGTTTCTTCGGAATCAGTTCACTTGGTGCAACTACCGGTTTGCAAATGCCCAAGTTTGTAAGTGTCTTAATCGTTTCTTATGTAATAGCTCATTTTTCTCTACTTTTTCGATGGCTGCCATTACGGGATCCTACAATAACCCTCCTTCCCTTGATTTCATACCATCCATTTATTAGAAGATGAATTGACAGGTCTTCTTGAGCAAGAAAAATTTTATTGGAACAAAGATCCAGGAAGATTGGTTAAAGTAGGGGGATCAGATACCAAATGGTTACATGTAAAAGCCACTCAAAGGAAGCGAACTAACTTCATTCATGGGATTTTCAATGGCAGATGGGTCTTGGATAGAAGATGAAAATGAAGTTGAGAACACTTTTGTTTTTGTTTTCCAATCTAATTCCAAACCCAAACAGATTGATATTGATATGGTTCTCCAGCACCTTCCTCCCAAAGTAACTCTTGCTATGAATACTTTTTTATTGGCCCCATTCCTAAGAGAGGAAATTGAGATTGCAACCAAACAAATGTTCCAACGAATGGGTAAGGCATCAGGCCAAAGCATTAACTTTGTGAAATCTGCTTTAGTTTTTTTGCCCAATTTTCATCCAGAGAGGCAGCGTATCTTTAGTCTACTTGGTATTAATTTGGTGACTGATTGGGTAATTATCTTAGGTTGCCGTCTTTTTTCTAGGTTGGGTTTATATTAAGGGCAAAATTTGGAATGTCATGCAAGGTAGGAAGTAAAAACTTTTTTTTTTTTTTTGTTGGGGGAAGAAGATTCACATAAAGAGTGTGGGAACTGCTATCCCGTCCTATGGCCGGAGGAGTGTTTTTTTCGCCTTTCGAAAGCTTTTACAGGGATTACAAAAAAATTTACTCAATTTTGGTGGGTACTACTAATACACATAGGAAGCTTCACTGGATGTGAGTTGGAAAAAGATGTGCATGCCCAAGGAGTTCTAAAGGCACAGTACTATTCTGACTCCCTCTTCTAGGTGTTGAGTTACATCCTTACTCATCTTATTTTTGGAAGAGCGTTCTTTAGGGTCGTGATTTGCTAGTTCAAGGCCTTCGTAAGCAGGTGGTATAATGGGGCTTCCACAAGGGCTTTCTTTAATCTTTGGATTTCTCGTCACATTCCTTCAAACCTACGAGCTCTCCTCCTAAAGGGTAATGATTTATGAGTCTCTAATCTAATGAGCCCAATGGGCCACTGAAATATTCCTAAGCTTCATACTTTCTTCCTCTAGGAGGATACAGACCTAATCATTAAATACCTCTTATCTCCAGCAATGCTTGAGACCACTGGCAGTGACATTTGTTGGATCGGTATGACAAGGGGGTGAATAGGGTTTAATTAATAAAATATAAACTTTTTAATAAATGAGCCCAATTTAAACAAAATAATACACTTTTTGAGATATGCAATTTTAACAAAGTAAGATAAAATAAATCTAAGGCAAACAAGAGAAATTTAAGGCAAACATAAAATTCTAAGATTAAATGCAAAAATAAATAAGAGAGAAGGTTAGAGAAATTTGACACCGGCAATTTTTATAGTGGTTCGCACAACTGTCCTACTCCACTTCCCAAGCACCTCTTGGGTTGTAAATTGAAATTCTGACTCTTTCCACGGTAGGAATCAAACCGATACACTGCTCTTCACACAAGAGCAAGACGATCCTCTCCACGTGAGGATCACAACCGTTACAATGAGTTGAAGATTTTTAAACACACACTTACAAACTCTCAAATAGAGTAATATACAAATTTGAGCTCACAAAAATTTCAATCCTCACAACAATAAAATTTCTCTCACAAATAAGATAGAAAGAAAAATTGAGAACTTGGAGAAATTAGCAAAATGCGAATTTTGAAGTTATGGAGTGTTGAGAATAAGAGAATTGTTGTGTAATTTTGAGAAGTTTAGTTTAAATAGAGGGGAATAAAATGGTAAAAAATCAAGTTTAATTTTAAACCATTAGATCTTAATCATTAAGAAGGAACGGTTAGATAATTTTGAAAAAAAATAAATTAAGAATAATATATATATATATATATATATATTATATAAAAGATATGCGACAAGTTATTTTAATCTTTTTTTTAAACAAAGTTACCGTCGGTAACTTTTGATTTTTTTTTAATTTTTTTTTTTGATTTTTTTTAATCTTTTTCTTTTCTTTTTCAATATATATATATATCTTTAAAAAGAAGTTTGTCACTGTCAGCATCGGGTATTTTTCCTTCCAATTTGTTTCGATCGTAACTTCTCCGTTTGAGCTCCGATTTGGATGATCTAACAGTAGTTTGAATCATTGTAACCGCTCTACACTGTGGACACTTTAAAATACAAAAAATGTCAATAAATAAAATTAAGTTTGTTATCATCAAAACATTAATTAATTAATTAATTAAAATTATTAATTTGAGATTAAGGCCAAAAAGCCAACAACATTTTTGACAAGAAGGATTTTTTCTCTATCAAAAGTACTTATAAGCTCTATATGCAAACATAATCTTATAAATGAATCTAATAGTAGTGTGGCAACTCAACATTCCCTTTAAGATAAAAATTTTGTTTGGAGGATTATTCACATTTTTCTTCCTATTATGTTTAATCTCCAAAATAGAGGAATGGAAGTCTTACCTCTCTACACTTGCTGCCATAGGAAGGTCAAACCATAATCCACACTCTCCTCTTCCACTGTCAGAGAGCAAAATGAACCTGACCATTGGTATTCCCTTTGGCTTACTCTCCCCTGGATCTGCATGTCTCGTTCTCCAACCTGTGGGAGAATTTTGTGAGTTGTCTTAGTAAACCAGATTTGGAAATTGTTGGAGAAACTTGCTTGTTAACCAAGATAAATCAATACATGATGTGGACGTTCGTAGTGCTTGGATTCTAGCGTATGTTGACTCGTTCAGGGTGCAAATGTGCGGCAACCAGCAAAGCCTCCAACGGGTCAACAACGGGCGGACTCAAACTTGGGCTGCCCTCCTTCGGGTTGGTTAAAATTTAACTCGTATGCAACCTGTTGCATGCGAAGCGGATCAACTGCAAAATCACACTTTACACCTATTACTTACCCTCCTCTTGAAGTAGAAATTTTAGCTATCCTCGATCAAGGAATCAGGTTTGCGCATGCCACCTCTTGCCGTCACCTCCTGTTGAATCGGATTCCCTCGGTGCAATTGCTCTAA

mRNA sequence

ATGGATGATTCTCCATGGCTTGTGGATGGTGATTTAAATGCAATTCTTTGGCACAATGAGACCTCTGCCCCAAGTTGCAATAATGGCAATCTCATTTCAGACTTCCGATCAGCTCTTGATGCTTGTTCTCTTTTTGATATAGGTTTCTTCGGAATCAGTTCACTTGGTGCAACTACCGATGGGTCTTGGATAGAAGATGAAAATGAAGTTGAGAACACTTTTGTTTTTGTTTTCCAATCTAATTCCAAACCCAAACAGATTGATATTGATATGGTTCTCCAGCACCTTCCTCCCAAAGTAACTCTTGCTATGAATACTTTTTTATTGGCCCCATTCCTAAGAGAGGAAATTGAGATTGCAACCAAACAAATGTTCCAACGAATGGGTAAGGCATCAGGCCAAAGCATTAACTTTGTGAAATCTGCTTTAGTTTTTTTGCCCAATTTTCATCCAGAGAGGCAGCGTATCTTTAGTCTACTTGGTATTAATTTGGTGACTGATTGGGGTCGTGATTTGCTAGTTCAAGGCCTTCGTAAGCAGGTGGGTGCAAATGTGCGGCAACCAGCAAAGCCTCCAACGGGTCAACAACGGGCGGACTCAAACTTGGGCTGCCCTCCTTCGGGTTGGTTAAAATTTAACTCGTATGCAACCTGTTGCATGCGAAGCGGATCAACTGCAAAATCACACTTTACACCTATTACTTACCCTCCTCTTGAAGTAGAAATTTTAGCTATCCTCGATCAAGGAATCAGGTTTGCGCATGCCACCTCTTGCCGTCACCTCCTGTTGAATCGGATTCCCTCGGTGCAATTGCTCTAA

Coding sequence (CDS)

ATGGATGATTCTCCATGGCTTGTGGATGGTGATTTAAATGCAATTCTTTGGCACAATGAGACCTCTGCCCCAAGTTGCAATAATGGCAATCTCATTTCAGACTTCCGATCAGCTCTTGATGCTTGTTCTCTTTTTGATATAGGTTTCTTCGGAATCAGTTCACTTGGTGCAACTACCGATGGGTCTTGGATAGAAGATGAAAATGAAGTTGAGAACACTTTTGTTTTTGTTTTCCAATCTAATTCCAAACCCAAACAGATTGATATTGATATGGTTCTCCAGCACCTTCCTCCCAAAGTAACTCTTGCTATGAATACTTTTTTATTGGCCCCATTCCTAAGAGAGGAAATTGAGATTGCAACCAAACAAATGTTCCAACGAATGGGTAAGGCATCAGGCCAAAGCATTAACTTTGTGAAATCTGCTTTAGTTTTTTTGCCCAATTTTCATCCAGAGAGGCAGCGTATCTTTAGTCTACTTGGTATTAATTTGGTGACTGATTGGGGTCGTGATTTGCTAGTTCAAGGCCTTCGTAAGCAGGTGGGTGCAAATGTGCGGCAACCAGCAAAGCCTCCAACGGGTCAACAACGGGCGGACTCAAACTTGGGCTGCCCTCCTTCGGGTTGGTTAAAATTTAACTCGTATGCAACCTGTTGCATGCGAAGCGGATCAACTGCAAAATCACACTTTACACCTATTACTTACCCTCCTCTTGAAGTAGAAATTTTAGCTATCCTCGATCAAGGAATCAGGTTTGCGCATGCCACCTCTTGCCGTCACCTCCTGTTGAATCGGATTCCCTCGGTGCAATTGCTCTAA

Protein sequence

MDDSPWLVDGDLNAILWHNETSAPSCNNGNLISDFRSALDACSLFDIGFFGISSLGATTDGSWIEDENEVENTFVFVFQSNSKPKQIDIDMVLQHLPPKVTLAMNTFLLAPFLREEIEIATKQMFQRMGKASGQSINFVKSALVFLPNFHPERQRIFSLLGINLVTDWGRDLLVQGLRKQVGANVRQPAKPPTGQQRADSNLGCPPSGWLKFNSYATCCMRSGSTAKSHFTPITYPPLEVEILAILDQGIRFAHATSCRHLLLNRIPSVQLL
Homology
[Close]
BLAST of Moc01g15360 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 59.3 bits (142), Expect = 5.9e-05
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 0 

Query: 1   MDDSPWLVDGDLNAILWHNETSAPSCNNGNLISDFRSALDACSLFDIGFFG 52
           +D SPWL+ GD+NAILW+ E S  S  + + I  FR+ +DACSL D+GF G
Sbjct: 382 LDASPWLIGGDMNAILWNYEASYTSSYDTSQIEAFRNIMDACSLTDMGFKG 432

[Close]
BLAST of Moc01g15360 vs. NCBI nr
Match: XP_022158772.1 (uncharacterized protein LOC111025237 [Momordica charantia])

HSP 1 Score: 55.8 bits (133), Expect = 6.6e-04
Identity = 27/65 (41.54%), Postives = 40/65 (61.54%), Query Frame = 0 

Query: 61  GSWIEDENEVENTFVFVFQ---SNSKPKQIDIDMVLQHLPPKVTLAMNTFLLAPFLREEI 120
           G W E+  E+ N F+  FQ   +++ P  +DID +  H+P ++T  +N  LLAP+  EEI
Sbjct: 193 GCWTEEPKEIGNIFITYFQDIFTSTSPLPLDIDSITTHIPTRITSEINAQLLAPYKYEEI 252

Query: 121 EIATK 123
           EIA K
Sbjct: 253 EIAIK 257

[Close]
BLAST of Moc01g15360 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.9e-05
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 0 

Query: 1   MDDSPWLVDGDLNAILWHNETSAPSCNNGNLISDFRSALDACSLFDIGFFG 52
           +D SPWL+ GD+NAILW+ E S  S  + + I  FR+ +DACSL D+GF G
Sbjct: 382 LDASPWLIGGDMNAILWNYEASYTSSYDTSQIEAFRNIMDACSLTDMGFKG 432

[Close]
BLAST of Moc01g15360 vs. ExPASy TrEMBL
Match: A0A6J1DY29 (uncharacterized protein LOC111025237 OS=Momordica charantia OX=3673 GN=LOC111025237 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.2e-04
Identity = 27/65 (41.54%), Postives = 40/65 (61.54%), Query Frame = 0 

Query: 61  GSWIEDENEVENTFVFVFQ---SNSKPKQIDIDMVLQHLPPKVTLAMNTFLLAPFLREEI 120
           G W E+  E+ N F+  FQ   +++ P  +DID +  H+P ++T  +N  LLAP+  EEI
Sbjct: 193 GCWTEEPKEIGNIFITYFQDIFTSTSPLPLDIDSITTHIPTRITSEINAQLLAPYKYEEI 252

Query: 121 EIATK 123
           EIA K
Sbjct: 253 EIAIK 257

[Close]
BLAST of Moc01g15360 vs. ExPASy TrEMBL
Match: A0A2N9HFJ6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38332 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.2e-04
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 0 

Query: 5   PWLVDGDLNAILWHNETSAPSCNNGNLISDFRSALDACSLFDIGFFG 52
           PW++ GD N IL HNE  + S  N N IS+FR+ LD+C L D+GF G
Sbjct: 879 PWMLAGDFNEILSHNEKFSSSPANRNRISNFRNCLDSCDLLDLGFHG 925

[Close]
BLAST of Moc01g15360 vs. ExPASy TrEMBL
Match: A0A2N9I2Z9 (RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS46597 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.2e-04
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 0 

Query: 5   PWLVDGDLNAILWHNETSAPSCNNGNLISDFRSALDACSLFDIGFFG 52
           PW++ GD N IL HNE  + S  N N IS+FR+ LD+C L D+GF G
Sbjct: 76  PWMLAGDFNEILSHNEKFSSSPANRNRISNFRNCLDSCDLLDLGFHG 122

The following BLAST results are available for this feature:
BLAST of Moc01g15360 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022158377.15.9e-0552.94uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_022158772.16.6e-0441.54uncharacterized protein LOC111025237 [Momordica charantia][more]
BLAST of Moc01g15360 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc01g15360 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DX302.9e-0552.94uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1DY293.2e-0441.54uncharacterized protein LOC111025237 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A2N9HFJ63.2e-0453.19Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38332 PE=4 SV=1[more]
A0A2N9I2Z93.2e-0453.19RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS46597 ... [more]
BLAST of Moc01g15360 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc01g15360.1Moc01g15360.1mRNA