Moc01g15340 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc01g15340
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCCHC-type domain-containing protein
Locationchr1: 9692869 .. 9693435 (+)
RNA-Seq ExpressionMoc01g15340
SyntenyMoc01g15340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAAGACAATGGCATTGAAACTTGGGAATGCTATTGGATCGTTTGAGGATGTGATTTGTGACAATGTCGGGTTTTGTTGGGGTAAAAGTCTTCGGATGCGTATCTCCATTGACATTTCTAAACCTCTTCGGCATGGAATAAAACTGAATCTTGATGGCCTGATCGGTGGATTTTGGATCCCTATCTAATATGAGCGTCTCCCAGATTTTTTTTATCATTGTGGTAAAATTGTTCACGTGCTTAAAGATTGTGATATTCCTTATGATGATGCAAGTACATCTATTGGGAAGAAACATCAATACGAACCTTGGCTTTGATTTCAAGGAACGCAAAAAAAATCTCGGCTTCCCTCTGCTTATGGTGATATTTGTTCAAAGAAATCTGGAAAAACTGGTGATCAGCAAGACATTTTTCCACCATCTGCAAATTTAGTCAAGACTCCTACTCAGCCACCAATTCCTGCCACTTCTTTCCCGACGTCCACCGCCCCACAGCTACAATCTCCTTCAATTATGGAAGAACAACTGTTACCAAATTCTGCTCTAGTATTTAATGCTGCGTAA

mRNA sequence

ATGAACAAGACAATGGCATTGAAACTTGGGAATGCTATTGGATCGTTTGAGGATGTGATTTGTGACAATGTCGGGTTTTGTTGGGGTAAAAGTCTTCGGATGCGTATCTCCATTGACATTTCTAAACCTCTTCGGCATGGAATAAAACTGAATCTTGATGGCCTGATCGGAACGCAAAAAAAATCTCGGCTTCCCTCTGCTTATGGTGATATTTGTTCAAAGAAATCTGGAAAAACTGGTGATCAGCAAGACATTTTTCCACCATCTGCAAATTTAGTCAAGACTCCTACTCAGCCACCAATTCCTGCCACTTCTTTCCCGACGTCCACCGCCCCACAGCTACAATCTCCTTCAATTATGGAAGAACAACTGTTACCAAATTCTGCTCTAGTATTTAATGCTGCGTAA

Coding sequence (CDS)

ATGAACAAGACAATGGCATTGAAACTTGGGAATGCTATTGGATCGTTTGAGGATGTGATTTGTGACAATGTCGGGTTTTGTTGGGGTAAAAGTCTTCGGATGCGTATCTCCATTGACATTTCTAAACCTCTTCGGCATGGAATAAAACTGAATCTTGATGGCCTGATCGGAACGCAAAAAAAATCTCGGCTTCCCTCTGCTTATGGTGATATTTGTTCAAAGAAATCTGGAAAAACTGGTGATCAGCAAGACATTTTTCCACCATCTGCAAATTTAGTCAAGACTCCTACTCAGCCACCAATTCCTGCCACTTCTTTCCCGACGTCCACCGCCCCACAGCTACAATCTCCTTCAATTATGGAAGAACAACTGTTACCAAATTCTGCTCTAGTATTTAATGCTGCGTAA

Protein sequence

MNKTMALKLGNAIGSFEDVICDNVGFCWGKSLRMRISIDISKPLRHGIKLNLDGLIGTQKKSRLPSAYGDICSKKSGKTGDQQDIFPPSANLVKTPTQPPIPATSFPTSTAPQLQSPSIMEEQLLPNSALVFNAA
Homology
BLAST of Moc01g15340 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 85.9 bits (211), Expect = 2.9e-13
Identity = 37/57 (64.91%), Postives = 48/57 (84.21%), Query Frame = 0

Query: 1   MNKTMALKLGNAIGSFEDVICDNVGFCWGKSLRMRISIDISKPLRHGIKLNLDGLIG 58
           +NKTMA++LGNAIG+F DV C+  GF WG SLR+R+ IDI+KPLR GIK+N+DG +G
Sbjct: 140 LNKTMAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMG 196

BLAST of Moc01g15340 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 79.7 bits (195), Expect = 2.1e-11
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 0

Query: 1   MNKTMALKLGNAIGSFEDVICDNVGFCWGKSLRMRISIDISKPLRHGIKLNLDGLIG 58
           MNKTMA +LGNAIG FEDV  +   FCWG  LR+R+  D+ KPL  GIKLNLDG +G
Sbjct: 141 MNKTMATRLGNAIGLFEDVESNANNFCWGSCLRVRVRFDVMKPLHRGIKLNLDGPMG 197

BLAST of Moc01g15340 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 75.1 bits (183), Expect = 5.2e-10
Identity = 50/129 (38.76%), Postives = 72/129 (55.81%), Query Frame = 0

Query: 1   MNKTMALKLGNAIGSFEDVICDNVGFCWGKSLRMRISIDISKPLRHGIKLNLDGLIGTQ- 60
           + + MA++LGNA+G FE+  CD++   WG +LR+R+ +DISKPLR GIKLNLDG IG   
Sbjct: 141 ITRDMAIRLGNALGGFEEADCDDLNPDWGSNLRVRVMLDISKPLRRGIKLNLDGPIGGAW 200

Query: 61  ---KKSRLPSAYGDIC-------SKKSGKTGD---QQDIFPPSANLVKTPTQPPIPAT-- 113
              +  RLP    D C       S+K  + G     Q    P+   +K P +  +  +  
Sbjct: 201 IPIQYERLP----DFCYHCGLSSSRKKHQYGSWLRYQGTVKPTMPQMKQPQEDLLDKSGN 260

BLAST of Moc01g15340 vs. NCBI nr
Match: XP_028124075.1 (uncharacterized protein LOC114321128 [Camellia sinensis])

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-05
Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 0

Query: 1   MNKTMALKLGNAIGSFEDVICDNVGFCWGKSLRMRISIDISKPLRHGIKLNL---DGLIG 60
           MNK +   +GNA+G F D+  ++ G  WG+++R+R++ID+ KPLR G+KL L   D +  
Sbjct: 138 MNKQVGQIVGNAVGQFIDMDYEDGGIAWGRTMRIRVAIDVRKPLRRGMKLALSSADPIWV 197

Query: 61  TQKKSRLP 66
             K  RLP
Sbjct: 198 DFKYERLP 205

BLAST of Moc01g15340 vs. NCBI nr
Match: KAF5477665.1 (hypothetical protein F2P56_004284, partial [Juglans regia])

HSP 1 Score: 58.5 bits (140), Expect = 5.0e-05
Identity = 33/94 (35.11%), Postives = 50/94 (53.19%), Query Frame = 0

Query: 1   MNKTMALKLGNAIGSFEDVICDNVGFCWGKSLRMRISIDISKPLRHGIKLNLDGLIGTQ- 60
           MN+ + +++GN++G F  V  D  G  WGK LR+R+ +DI+K L  G+ +N+DG      
Sbjct: 138 MNQEVGIQIGNSLGRFIKVHVDERGIGWGKFLRIRVELDITKTLLRGLFINVDGKKTWVY 197

Query: 61  -KKSRLPSA---------YGDICSKKSGKTGDQQ 84
            K  RLPS            + CS + G+ G  Q
Sbjct: 198 FKYERLPSLCFKCGVIRHVKNSCSNQEGREGQSQ 231

BLAST of Moc01g15340 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.4e-13
Identity = 37/57 (64.91%), Postives = 48/57 (84.21%), Query Frame = 0

Query: 1   MNKTMALKLGNAIGSFEDVICDNVGFCWGKSLRMRISIDISKPLRHGIKLNLDGLIG 58
           +NKTMA++LGNAIG+F DV C+  GF WG SLR+R+ IDI+KPLR GIK+N+DG +G
Sbjct: 140 LNKTMAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMG 196

BLAST of Moc01g15340 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.0e-11
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 0

Query: 1   MNKTMALKLGNAIGSFEDVICDNVGFCWGKSLRMRISIDISKPLRHGIKLNLDGLIG 58
           MNKTMA +LGNAIG FEDV  +   FCWG  LR+R+  D+ KPL  GIKLNLDG +G
Sbjct: 141 MNKTMATRLGNAIGLFEDVESNANNFCWGSCLRVRVRFDVMKPLHRGIKLNLDGPMG 197

BLAST of Moc01g15340 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.5e-10
Identity = 50/129 (38.76%), Postives = 72/129 (55.81%), Query Frame = 0

Query: 1   MNKTMALKLGNAIGSFEDVICDNVGFCWGKSLRMRISIDISKPLRHGIKLNLDGLIGTQ- 60
           + + MA++LGNA+G FE+  CD++   WG +LR+R+ +DISKPLR GIKLNLDG IG   
Sbjct: 141 ITRDMAIRLGNALGGFEEADCDDLNPDWGSNLRVRVMLDISKPLRRGIKLNLDGPIGGAW 200

Query: 61  ---KKSRLPSAYGDIC-------SKKSGKTGD---QQDIFPPSANLVKTPTQPPIPAT-- 113
              +  RLP    D C       S+K  + G     Q    P+   +K P +  +  +  
Sbjct: 201 IPIQYERLP----DFCYHCGLSSSRKKHQYGSWLRYQGTVKPTMPQMKQPQEDLLDKSGN 260

BLAST of Moc01g15340 vs. ExPASy TrEMBL
Match: A0A803QQH9 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.2e-04
Identity = 24/50 (48.00%), Postives = 36/50 (72.00%), Query Frame = 0

Query: 3   KTMALKLGNAIGSFEDVICDNVGFCWGKSLRMRISIDISKPLRHGIKLNL 53
           KT+A+ LGN IG FEDV  D++   WG  LR+R+ +D++KPL+ G  ++L
Sbjct: 61  KTLAVALGNIIGKFEDVFEDSLNEGWGPFLRIRVLMDVTKPLKRGRMISL 110

BLAST of Moc01g15340 vs. ExPASy TrEMBL
Match: A0A1S8AC25 (CCHC-type domain-containing protein (Fragment) OS=Citrus limon OX=2708 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-04
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 0

Query: 1   MNKTMALKLGNAIGSFEDVICDNVGFCWGKSLRMRISIDISKPLRHGIKL 51
           M+K MA +LG  IG  E+V  D  G C+G+ LR+RIS+DI+KPL+  I+L
Sbjct: 139 MSKDMAAELGKVIGKVEEVETDAAGECFGQFLRLRISVDITKPLKKIIEL 188

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156185.12.9e-1364.91uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha... [more]
XP_022132681.12.1e-1163.16uncharacterized protein LOC111005481 [Momordica charantia][more]
XP_022158377.15.2e-1038.76uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_028124075.12.3e-0542.65uncharacterized protein LOC114321128 [Camellia sinensis][more]
KAF5477665.15.0e-0535.11hypothetical protein F2P56_004284, partial [Juglans regia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DU551.4e-1364.91uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1BSZ11.0e-1163.16uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A6J1DX302.5e-1038.76uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A803QQH91.2e-0448.00Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A1S8AC251.6e-0452.00CCHC-type domain-containing protein (Fragment) OS=Citrus limon OX=2708 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..113
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc01g15340.1Moc01g15340.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding