Moc01g15320 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc01g15320
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	chr1: 9645837 .. 9646186 (+)
RNA-Seq Expression	Moc01g15320
Synteny	Moc01g15320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGTAGTGCATGCAAGCACTGTGGGAAGCAGAATCATCCACACTTCAGATGCTAGGAAAGGTCAGATGTGAAGTGTAGTGGGTGTCATTTATTGGGGTACATTGAGAGGCTATGTAAGGAAGCAAAGACTCAACAACAAGGAGGAGTACATGCTACAGTATAGCAAGAAGAAGATCAACTCTTTGTGACTACCTGTTTCTCACCAGCCACTCAATGTGATGGTTGGTTGGTTGATAGTGGGTGTACCAATCACATAACAAGTGACAAAGAGTTGTTCAAGGACCTTGACAAGTCATTCAAGTCAAGGGTGAAGATAGGGAATGGTGAGTATCTAGAAGTGAAGTGA

mRNA sequence

ATGCTGGTAGTGCATGCAAGCACTGTGGGAAGCAGAATCATCCACACTTCAGATGCTAGGAAAGCCACTCAATGTGATGGTTGGTTGGTTGATAGTGGGTGTACCAATCACATAACAAGTGACAAAGAGTTGTTCAAGGACCTTGACAAGTCATTCAAGTCAAGGGTGAAGATAGGGAATGGTGAGTATCTAGAAGTGAAGTGA

Coding sequence (CDS)

ATGCTGGTAGTGCATGCAAGCACTGTGGGAAGCAGAATCATCCACACTTCAGATGCTAGGAAAGCCACTCAATGTGATGGTTGGTTGGTTGATAGTGGGTGTACCAATCACATAACAAGTGACAAAGAGTTGTTCAAGGACCTTGACAAGTCATTCAAGTCAAGGGTGAAGATAGGGAATGGTGAGTATCTAGAAGTGAAGTGA

Protein sequence

MLVVHASTVGSRIIHTSDARKATQCDGWLVDSGCTNHITSDKELFKDLDKSFKSRVKIGNGEYLEVK

Homology

[Close]

BLAST of Moc01g15320 vs. NCBI nr
Match: XP_038889190.1 (uncharacterized protein LOC120079069 [Benincasa hispida])

HSP 1 Score: 94.4 bits (233), Expect = 4.1e-16
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 20  RKATQCDGWLVDSGCTNHITSDKELFKDLDKSFKSRVKIGNGEYLEVK 68
           R  TQCDGWLVDSGCTNH+T+DKELFKD+DKSFK RVKIGNGEYLEVK
Sbjct: 251 RLFTQCDGWLVDSGCTNHMTNDKELFKDIDKSFKPRVKIGNGEYLEVK 298

[Close]

BLAST of Moc01g15320 vs. NCBI nr
Match: XP_022148138.1 (uncharacterized protein LOC111016891 [Momordica charantia])

HSP 1 Score: 92.4 bits (228), Expect = 1.6e-15
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 0


Query: 24  QCDGWLVDSGCTNHITSDKELFKDLDKSFKSRVKIGNGEYLEVK 68
           QCDGWLVDSGCTNH+TSDKELFKDLDKSFKSRVKI NGEYLEVK
Sbjct: 289 QCDGWLVDSGCTNHMTSDKELFKDLDKSFKSRVKIENGEYLEVK 332

[Close]

BLAST of Moc01g15320 vs. NCBI nr
Match: XP_022151646.1 (uncharacterized protein LOC111019554 [Momordica charantia])

HSP 1 Score: 91.3 bits (225), Expect = 3.5e-15
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 22  ATQCDGWLVDSGCTNHITSDKELFKDLDKSFKSRVKIGNGEYLEVK 68
           A QCDGWLVDSGCTNH+TSD  LFKDLDKSFKSRVKIGNGEYL+VK
Sbjct: 176 ANQCDGWLVDSGCTNHMTSDNGLFKDLDKSFKSRVKIGNGEYLDVK 221

[Close]

BLAST of Moc01g15320 vs. NCBI nr
Match: XP_038885771.1 (uncharacterized protein LOC120076063 [Benincasa hispida])

HSP 1 Score: 90.9 bits (224), Expect = 4.5e-15
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 23 TQCDGWLVDSGCTNHITSDKELFKDLDKSFKSRVKIGNGEYLEVK 68
          TQCDGWLVDSG TNH+TSDKELFKDLDKSFKSRVKIGN EYLEVK
Sbjct: 43 TQCDGWLVDSGYTNHMTSDKELFKDLDKSFKSRVKIGNSEYLEVK 87

[Close]

BLAST of Moc01g15320 vs. NCBI nr
Match: XP_038904297.1 (uncharacterized protein LOC120090652 [Benincasa hispida])

HSP 1 Score: 90.1 bits (222), Expect = 7.7e-15
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 23  TQCDGWLVDSGCTNHITSDKELFKDLDKSFKSRVKIGNGEYLEVK 68
           TQCDGWLVDSGCTNH+TSDKELFKDLDKSFKSRVKI N EY EVK
Sbjct: 162 TQCDGWLVDSGCTNHMTSDKELFKDLDKSFKSRVKIENDEYFEVK 206

[Close]

BLAST of Moc01g15320 vs. ExPASy TrEMBL
Match: A0A6J1D394 (uncharacterized protein LOC111016891 OS=Momordica charantia OX=3673 GN=LOC111016891 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.5e-16
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 0


Query: 24  QCDGWLVDSGCTNHITSDKELFKDLDKSFKSRVKIGNGEYLEVK 68
           QCDGWLVDSGCTNH+TSDKELFKDLDKSFKSRVKI NGEYLEVK
Sbjct: 289 QCDGWLVDSGCTNHMTSDKELFKDLDKSFKSRVKIENGEYLEVK 332

[Close]

BLAST of Moc01g15320 vs. ExPASy TrEMBL
Match: A0A6J1DFA6 (uncharacterized protein LOC111019554 OS=Momordica charantia OX=3673 GN=LOC111019554 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.7e-15
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 22  ATQCDGWLVDSGCTNHITSDKELFKDLDKSFKSRVKIGNGEYLEVK 68
           A QCDGWLVDSGCTNH+TSD  LFKDLDKSFKSRVKIGNGEYL+VK
Sbjct: 176 ANQCDGWLVDSGCTNHMTSDNGLFKDLDKSFKSRVKIGNGEYLDVK 221

[Close]

BLAST of Moc01g15320 vs. ExPASy TrEMBL
Match: A0A6J1DWT9 (uncharacterized protein LOC111025149 OS=Momordica charantia OX=3673 GN=LOC111025149 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-14
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 23  TQCDGWLVDSGCTNHITSDKELFKDLDKSFKSRVKIGNGEYLEVK 68
           TQCD WLVDSGCTN + SDKELFKDLD+SFKSRVKIGNGEYLEVK
Sbjct: 258 TQCDSWLVDSGCTNXMXSDKELFKDLDRSFKSRVKIGNGEYLEVK 302

[Close]

BLAST of Moc01g15320 vs. ExPASy TrEMBL
Match: A0A1S3BNQ3 (uncharacterized protein LOC103491872 OS=Cucumis melo OX=3656 GN=LOC103491872 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.7e-12
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 23  TQCDGWLVDSGCTNHITSDKELFKDLDKSFKSRVKIGNGEYLEVK 68
           TQ DGWLVDSGCTNH+TS K+LFK+LD SFKSR+KIGNG YLEVK
Sbjct: 239 TQYDGWLVDSGCTNHMTSYKDLFKELDTSFKSRMKIGNGAYLEVK 283

[Close]

BLAST of Moc01g15320 vs. ExPASy TrEMBL
Match: A0A6P4PSP3 (uncharacterized protein LOC108481577 OS=Gossypium arboreum OX=29729 GN=LOC108481577 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.9e-12
Identity = 34/43 (79.07%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 25  CDGWLVDSGCTNHITSDKELFKDLDKSFKSRVKIGNGEYLEVK 68
           CD WLVDSGCTNH+T D++LFKDLD+S KS+V+IGNGEYLEVK
Sbjct: 215 CDSWLVDSGCTNHMTYDEKLFKDLDRSLKSKVRIGNGEYLEVK 257

The following BLAST results are available for this feature:

BLAST of Moc01g15320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889190.1	4.1e-16	87.50	uncharacterized protein LOC120079069 [Benincasa hispida]	[more]
XP_022148138.1	1.6e-15	95.45	uncharacterized protein LOC111016891 [Momordica charantia]	[more]
XP_022151646.1	3.5e-15	89.13	uncharacterized protein LOC111019554 [Momordica charantia]	[more]
XP_038885771.1	4.5e-15	93.33	uncharacterized protein LOC120076063 [Benincasa hispida]	[more]
XP_038904297.1	7.7e-15	91.11	uncharacterized protein LOC120090652 [Benincasa hispida]	[more]

BLAST of Moc01g15320 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc01g15320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D394	7.5e-16	95.45	uncharacterized protein LOC111016891 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1DFA6	1.7e-15	89.13	uncharacterized protein LOC111019554 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1DWT9	1.4e-14	88.89	uncharacterized protein LOC111025149 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A1S3BNQ3	1.7e-12	82.22	uncharacterized protein LOC103491872 OS=Cucumis melo OX=3656 GN=LOC103491872 PE=...	[more]
A0A6P4PSP3	3.9e-12	79.07	uncharacterized protein LOC108481577 OS=Gossypium arboreum OX=29729 GN=LOC108481...	[more]

BLAST of Moc01g15320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 21..67
None	No IPR available	PANTHER	PTHR34222:SF31	SUBFAMILY NOT NAMED	coord: 21..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc01g15320.1	Moc01g15320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding