Moc01g15070 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc01g15070
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ty1-copia retrotransposon protein
Location	chr1: 9482985 .. 9483917 (+)
RNA-Seq Expression	Moc01g15070
Synteny	Moc01g15070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGCTGATTCTGGAACGTCCACTGTTGCTATCGATGGTACTGACAAATTTGAGAAAGACAACAAGATTGTTCGTGGGCATCTACTCAACCATATGAAGGATTCTCTCTTTTATCTCTTCGTAGTCCAAAAATCTGCAAAGATTATTTGGGACAATTTAGAATCTAGATATGGTGGGGATGATGCAGGCAGGAAAAAGTACGTCGTCGGTAAATTATTTCAATTCCAGATGACGGATGAAAAACCAATAATGGATCAAGTTCATGAGTACGAAAACCTGGTGGCAAATGTGCTCTTAGAAGGCATGAAGATTTGTGAGGTTTTTCAGGCGAATTCACTGCTTGAGAAATTCCCTCCCTCATGGAGTGATTATCGAAACCACCTGAAATACAAGAAAAAAGAGTCGATCCTGCAAGAACTTATCAGTCACATGCATACAGAGGAAGCCAACAAATAAAAGGATAAGCTCTCTTCCCAATCTTTAAATTCAGTTAAAGCTAACTTAGTTGAATCTTCTAATGCTTTCAAAGACAGGTTCAAAAACAAAGGGAAACAGGGTTTTAATGATAGAGTACAAAATAAGAAGGGATTCCAACTCAAAAATGCTGAAGGAAAATTTGAGAAAGCCAAACTGGTTTGTTATGTCTGTAGAAAACTAGGACACAAATCCTATCAATGCATCCAGAGAAAAGACAAACGGCGTACTCCACAAGCGAATCTCACAGAGACAGATGATATCATTGTCGTCGTGGTCATTGAGGCAAATGTGGTAGAGAACAAGTCTAACTGGATCCTAGACACCGGAGCTTCTAGACACTTATGCTCAAACCGTGAGCTCTTCCACGACTTCCAGGACTCCACCAAGGGCAAATGTGTCTTTATGGGGAACTCTACCACAACTGGAGTACTTGGGAAAGGGAAGATACTCTAA

mRNA sequence

ATGACTGCTGATTCTGGAACGTCCACTGTTGCTATCGATGGACACAAATCCTATCAATGCATCCAGAGAAAAGACAAACGGCGTACTCCACAAGCGAATCTCACAGAGACAGATGATATCATTGTCGTCGTGGTCATTGAGGCAAATGTGGTAGAGAACAAGTCTAACTGGATCCTAGACACCGGAGCTTCTAGACACTTATGCTCAAACCGTGAGCTCTTCCACGACTTCCAGGACTCCACCAAGGGCAAATGTGTCTTTATGGGGAACTCTACCACAACTGGAGTACTTGGGAAAGGGAAGATACTCTAA

Coding sequence (CDS)

ATGACTGCTGATTCTGGAACGTCCACTGTTGCTATCGATGGACACAAATCCTATCAATGCATCCAGAGAAAAGACAAACGGCGTACTCCACAAGCGAATCTCACAGAGACAGATGATATCATTGTCGTCGTGGTCATTGAGGCAAATGTGGTAGAGAACAAGTCTAACTGGATCCTAGACACCGGAGCTTCTAGACACTTATGCTCAAACCGTGAGCTCTTCCACGACTTCCAGGACTCCACCAAGGGCAAATGTGTCTTTATGGGGAACTCTACCACAACTGGAGTACTTGGGAAAGGGAAGATACTCTAA

Protein sequence

MTADSGTSTVAIDGHKSYQCIQRKDKRRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLCSNRELFHDFQDSTKGKCVFMGNSTTTGVLGKGKIL

Homology

[Close]

BLAST of Moc01g15070 vs. NCBI nr
Match: XP_022153695.1 (uncharacterized protein LOC111021147 [Momordica charantia])

HSP 1 Score: 151.8 bits (382), Expect = 3.3e-33
Identity = 71/92 (77.17%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 15  HKSYQCIQRKDK---RRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLCSNR 74
           HKSYQC Q+KD+   R TPQANLTETDDII  VV+E N+VENKS+WILDTGASRH CSNR
Sbjct: 148 HKSYQCTQKKDRIDQRATPQANLTETDDIITTVVVETNLVENKSDWILDTGASRHFCSNR 207

Query: 75  ELFHDFQDSTKGKCVFMGNSTTTGVLGKGKIL 104
           +LFHDFQDS  G+CVFMGNS T GVLGKGK+L
Sbjct: 208 DLFHDFQDSADGECVFMGNSATVGVLGKGKVL 239

[Close]

BLAST of Moc01g15070 vs. NCBI nr
Match: TYK12176.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 134.0 bits (336), Expect = 7.2e-28
Identity = 59/92 (64.13%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 15  HKSYQCIQRK---DKRRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLCSNR 74
           HKSYQC QRK    ++ TPQANL E D  I+V ++EAN++ENK++WILDTGASRH C+NR
Sbjct: 12  HKSYQCNQRKGRPSQKPTPQANLAEQDSEIIVAIVEANLIENKTDWILDTGASRHFCTNR 71

Query: 75  ELFHDFQDSTKGKCVFMGNSTTTGVLGKGKIL 104
           EL HD++D+  G+CVFMGNSTT GV+GKGK++
Sbjct: 72  ELLHDYEDTADGECVFMGNSTTAGVIGKGKVI 103

[Close]

BLAST of Moc01g15070 vs. NCBI nr
Match: XP_016471390.1 (PREDICTED: uncharacterized protein LOC107793528 [Nicotiana tabacum])

HSP 1 Score: 133.7 bits (335), Expect = 9.4e-28
Identity = 61/95 (64.21%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 15  HKSYQCIQR------KDKRRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLC 74
           HK +QC QR      K  +  PQANLTE+ D+I VV++EAN+V NK++WILDTGASRHLC
Sbjct: 254 HKDFQCNQRQGQSSKKGGKIPPQANLTESGDVITVVIVEANMVANKTDWILDTGASRHLC 313

Query: 75  SNRELFHDFQDSTKGKCVFMGNSTTTGVLGKGKIL 104
           +N+ELFHDF++ST G+CV+MGNSTT GV+GKGK+L
Sbjct: 314 ANKELFHDFEESTDGECVYMGNSTTVGVIGKGKVL 348

[Close]

BLAST of Moc01g15070 vs. NCBI nr
Match: XP_022157709.1 (uncharacterized protein LOC111024362 [Momordica charantia])

HSP 1 Score: 133.7 bits (335), Expect = 9.4e-28
Identity = 64/90 (71.11%), Postives = 73/90 (81.11%), Query Frame = 0


Query: 14  GHKSYQCIQRKDKRRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLCSNREL 73
           G K  +   R+DKR TPQANL ETDDII  +V++AN+VE K +WILDT ASRH CSNRE+
Sbjct: 249 GGKIEKAKLRQDKRPTPQANLAETDDIIAAMVVKANLVEKKFDWILDTRASRHFCSNREI 308

Query: 74  FHDFQDSTKGKCVFMGNSTTTGVLGKGKIL 104
           FHDFQDST G+CVFMGN TT GVLGKGKIL
Sbjct: 309 FHDFQDSTDGECVFMGNPTTAGVLGKGKIL 338

[Close]

BLAST of Moc01g15070 vs. NCBI nr
Match: TYK04394.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 1.2e-27
Identity = 58/94 (61.70%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 13  DGHKSYQCIQRK---DKRRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLCS 72
           +GHKSYQC QRK    ++ TPQANL E D  I+  ++EAN++ENK++WILDTGASRH C+
Sbjct: 288 EGHKSYQCNQRKGRPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCT 347

Query: 73  NRELFHDFQDSTKGKCVFMGNSTTTGVLGKGKIL 104
           NREL HD++D+  G+CVFMGNS T GV+GKGK++
Sbjct: 348 NRELLHDYEDTADGECVFMGNSATAGVIGKGKVI 381

[Close]

BLAST of Moc01g15070 vs. ExPASy TrEMBL
Match: A0A6J1DHJ4 (uncharacterized protein LOC111021147 OS=Momordica charantia OX=3673 GN=LOC111021147 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.6e-33
Identity = 71/92 (77.17%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 15  HKSYQCIQRKDK---RRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLCSNR 74
           HKSYQC Q+KD+   R TPQANLTETDDII  VV+E N+VENKS+WILDTGASRH CSNR
Sbjct: 148 HKSYQCTQKKDRIDQRATPQANLTETDDIITTVVVETNLVENKSDWILDTGASRHFCSNR 207

Query: 75  ELFHDFQDSTKGKCVFMGNSTTTGVLGKGKIL 104
           +LFHDFQDS  G+CVFMGNS T GVLGKGK+L
Sbjct: 208 DLFHDFQDSADGECVFMGNSATVGVLGKGKVL 239

[Close]

BLAST of Moc01g15070 vs. ExPASy TrEMBL
Match: A0A5D3CP43 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001170 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.5e-28
Identity = 59/92 (64.13%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 15  HKSYQCIQRK---DKRRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLCSNR 74
           HKSYQC QRK    ++ TPQANL E D  I+V ++EAN++ENK++WILDTGASRH C+NR
Sbjct: 12  HKSYQCNQRKGRPSQKPTPQANLAEQDSEIIVAIVEANLIENKTDWILDTGASRHFCTNR 71

Query: 75  ELFHDFQDSTKGKCVFMGNSTTTGVLGKGKIL 104
           EL HD++D+  G+CVFMGNSTT GV+GKGK++
Sbjct: 72  ELLHDYEDTADGECVFMGNSTTAGVIGKGKVI 103

[Close]

BLAST of Moc01g15070 vs. ExPASy TrEMBL
Match: A0A6J1DXB7 (uncharacterized protein LOC111024362 OS=Momordica charantia OX=3673 GN=LOC111024362 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.5e-28
Identity = 64/90 (71.11%), Postives = 73/90 (81.11%), Query Frame = 0


Query: 14  GHKSYQCIQRKDKRRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLCSNREL 73
           G K  +   R+DKR TPQANL ETDDII  +V++AN+VE K +WILDT ASRH CSNRE+
Sbjct: 249 GGKIEKAKLRQDKRPTPQANLAETDDIIAAMVVKANLVEKKFDWILDTRASRHFCSNREI 308

Query: 74  FHDFQDSTKGKCVFMGNSTTTGVLGKGKIL 104
           FHDFQDST G+CVFMGN TT GVLGKGKIL
Sbjct: 309 FHDFQDSTDGECVFMGNPTTAGVLGKGKIL 338

[Close]

BLAST of Moc01g15070 vs. ExPASy TrEMBL
Match: A0A1S4A453 (uncharacterized protein LOC107793528 OS=Nicotiana tabacum OX=4097 GN=LOC107793528 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.5e-28
Identity = 61/95 (64.21%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 15  HKSYQCIQR------KDKRRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLC 74
           HK +QC QR      K  +  PQANLTE+ D+I VV++EAN+V NK++WILDTGASRHLC
Sbjct: 254 HKDFQCNQRQGQSSKKGGKIPPQANLTESGDVITVVIVEANMVANKTDWILDTGASRHLC 313

Query: 75  SNRELFHDFQDSTKGKCVFMGNSTTTGVLGKGKIL 104
           +N+ELFHDF++ST G+CV+MGNSTT GV+GKGK+L
Sbjct: 314 ANKELFHDFEESTDGECVYMGNSTTVGVIGKGKVL 348

[Close]

BLAST of Moc01g15070 vs. ExPASy TrEMBL
Match: A0A5D3DJE2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G004120 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.9e-28
Identity = 58/94 (61.70%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 13  DGHKSYQCIQRK---DKRRTPQANLTETDDIIVVVVIEANVVENKSNWILDTGASRHLCS 72
           +GHKSYQC QRK    ++ TPQANL E D  I+  ++EAN++ENK++WILDTGASRH C+
Sbjct: 184 EGHKSYQCNQRKGRPSQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCT 243

Query: 73  NRELFHDFQDSTKGKCVFMGNSTTTGVLGKGKIL 104
           NREL HD++D+  G+CVFMGNS T GV+GKGK++
Sbjct: 244 NRELLHDYEDTADGECVFMGNSATAGVIGKGKVI 277

The following BLAST results are available for this feature:

BLAST of Moc01g15070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153695.1	3.3e-33	77.17	uncharacterized protein LOC111021147 [Momordica charantia]	[more]
TYK12176.1	7.2e-28	64.13	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_016471390.1	9.4e-28	64.21	PREDICTED: uncharacterized protein LOC107793528 [Nicotiana tabacum]	[more]
XP_022157709.1	9.4e-28	71.11	uncharacterized protein LOC111024362 [Momordica charantia]	[more]
TYK04394.1	1.2e-27	61.70	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Moc01g15070 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc01g15070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DHJ4	1.6e-33	77.17	uncharacterized protein LOC111021147 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A5D3CP43	3.5e-28	64.13	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1DXB7	4.5e-28	71.11	uncharacterized protein LOC111024362 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A1S4A453	4.5e-28	64.21	uncharacterized protein LOC107793528 OS=Nicotiana tabacum OX=4097 GN=LOC10779352...	[more]
A0A5D3DJE2	5.9e-28	61.70	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Moc01g15070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47592:SF5	OS08G0421300 PROTEIN	coord: 30..103
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 30..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc01g15070.1	Moc01g15070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding