Moc01g14590 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc01g14590
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Location	chr1: 9065187 .. 9066305 (+)
RNA-Seq Expression	Moc01g14590
Synteny	Moc01g14590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAAGAGAAGGAAGCAAGGCTTGATGAATTTGGTGGAGAAGTTGCTGGAATTTATAGCTGTGCAGAATTGGTTAGGTAGGTCCTAAAACGATGGTGAATCACCCATTTCCAACTCTTTTGACTGACCAAATCGTGCTCAAACTGATAGTGGAACACTTCTTCTACACGTATGCATCGGTTGGAACCACCAAAACGCATTGGAAGACGCGTTTCATTAAGGGCAAAGTTGGAAGAAAACCAGTTTTTCTGCAGGCTTCCCAGGCGCCTGGCGCCTCCCATGATACTTTTTCGTCTTTTTGCTTCTTTTGATTAATTTGCACTCTCAAATGGTCCTAAAATATCATAAATACAATATAAGCCATCCACAAACCATAGTATATGAATTTTGCATGAATTGGAACTCAAACGATCGAGAAAAATCCGAAACAAAGCTGAAACATAGTAAAAACAGCATCTAAAACCTTCTTTTTACGCATGTAAACAAGCGTAATCACTGGGATCGTTTATTGTTTTGTTTATGGACACAATCATCTATATTTTATTGTTTTTGTACTTTTGGTATCCTCAAGCATAGTTTAGAATATTTTCTTAAGTTCCTATGGATTCGACCTCGTTTCGTACTACAATCGATGGATATAGTGTACACTTGCACGGGTATCCAACACGATTGTGTGGACTCAAAAGTAGCTGTTGCTCTAAATCACTGAAGCATCGTTGCAAAAATAATCTTGATTATAGGGTGCATTATTACTTTTTGCTAAAATTGATTGGGTTTTAATGGGTAGTACAAGTGTCTAATATATATTTGTTTGTATTTCAGCATGTCCAAAAGTATTGCCCTACTTGCCGCCGAAAAACTTAACGGTGGAAATTACCCACAATGGAAAATGAACCTTAACAGGATACTCGTGGTAGATGATCTTAGGTTCGTCTTAACTAAGGAGTGTCCTCAGGCTCCCATGTCTAATGCAGTCCGAGCCAGTCAGGATGCCTATGACAGATGGATCGAGGCCAATGACAAGGCCAAGGTCTACATCTTGGCAAACATATTTGATGTGCTGGCCAAAAAGCATGACATCATGGTCACCGCAAGGGAGATCATTGACTCATTGTAG

mRNA sequence

ATGATCAAGAGAAGGAAGCAAGGCTTGATGAATTTGGTGGAGAAGTTGCTGGAATTTATAGCTGTGCAGAATTGCATGTCCAAAAGTATTGCCCTACTTGCCGCCGAAAAACTTAACGGTGGAAATTACCCACAATGGAAAATGAACCTTAACAGGATACTCGTGGTAGATGATCTTAGGTTCGTCTTAACTAAGGAGTGTCCTCAGGCTCCCATGTCTAATGCAGTCCGAGCCAGTCAGGATGCCTATGACAGATGGATCGAGGCCAATGACAAGGCCAAGGTCTACATCTTGGCAAACATATTTGATGTGCTGGCCAAAAAGCATGACATCATGGTCACCGCAAGGGAGATCATTGACTCATTGTAG

Coding sequence (CDS)

ATGATCAAGAGAAGGAAGCAAGGCTTGATGAATTTGGTGGAGAAGTTGCTGGAATTTATAGCTGTGCAGAATTGCATGTCCAAAAGTATTGCCCTACTTGCCGCCGAAAAACTTAACGGTGGAAATTACCCACAATGGAAAATGAACCTTAACAGGATACTCGTGGTAGATGATCTTAGGTTCGTCTTAACTAAGGAGTGTCCTCAGGCTCCCATGTCTAATGCAGTCCGAGCCAGTCAGGATGCCTATGACAGATGGATCGAGGCCAATGACAAGGCCAAGGTCTACATCTTGGCAAACATATTTGATGTGCTGGCCAAAAAGCATGACATCATGGTCACCGCAAGGGAGATCATTGACTCATTGTAG

Protein sequence

MIKRRKQGLMNLVEKLLEFIAVQNCMSKSIALLAAEKLNGGNYPQWKMNLNRILVVDDLRFVLTKECPQAPMSNAVRASQDAYDRWIEANDKAKVYILANIFDVLAKKHDIMVTAREIIDSL

Homology

[Close]

BLAST of Moc01g14590 vs. NCBI nr
Match: XP_022156751.1 (uncharacterized protein LOC111023591 [Momordica charantia])

HSP 1 Score: 158.7 bits (400), Expect = 3.2e-35
Identity = 79/97 (81.44%), Postives = 86/97 (88.66%), Query Frame = 0


Query: 26  MSKSIALLAAEKLNGGNYPQWKMNLNRILVVDDLRFVLTKECPQAPMSNAVRASQDAYDR 85
           MSKSIALLAA+KLN  NY QWK NLN ILVVDDLRFVLT++CPQAP SNA RASQDAYDR
Sbjct: 1   MSKSIALLAAKKLNDKNYTQWKTNLNTILVVDDLRFVLTEKCPQAPTSNAARASQDAYDR 60

Query: 86  WIEANDKAKVYILANIFDVLAKKHDIMVTAREIIDSL 123
           WI+ANDKAK+YILA I +VLAKKH  MVTAREI+DSL
Sbjct: 61  WIKANDKAKIYILATISNVLAKKHKSMVTAREIMDSL 97

[Close]

BLAST of Moc01g14590 vs. NCBI nr
Match: XP_022158202.1 (uncharacterized protein LOC111024739 [Momordica charantia])

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-32
Identity = 75/93 (80.65%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 30  IALLAAEKLNGGNYPQWKMNLNRILVVDDLRFVLTKECPQAPMSNAVRASQDAYDRWIEA 89
           IALLA EKLNG NY QWK NLN ILVVDDLRFVLT+EC Q P  NAVRAS+DAYDRWI+A
Sbjct: 6   IALLAIEKLNGKNYTQWKTNLNAILVVDDLRFVLTEECRQPPTPNAVRASRDAYDRWIKA 65

Query: 90  NDKAKVYILANIFDVLAKKHDIMVTAREIIDSL 123
           NDKAKVYI A+I DVLAKKHD MVT REI+DSL
Sbjct: 66  NDKAKVYIFASISDVLAKKHDRMVTTREIMDSL 98

[Close]

BLAST of Moc01g14590 vs. NCBI nr
Match: XP_022157449.1 (uncharacterized protein LOC111024145 [Momordica charantia])

HSP 1 Score: 149.1 bits (375), Expect = 2.6e-32
Identity = 72/93 (77.42%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 30  IALLAAEKLNGGNYPQWKMNLNRILVVDDLRFVLTKECPQAPMSNAVRASQDAYDRWIEA 89
           IALLAAEK N  NY QWK NLN ILVVDDLRF+LT+ECPQAP  NA RAS+DAYDRWI+A
Sbjct: 45  IALLAAEKFNSENYTQWKTNLNTILVVDDLRFILTEECPQAPTPNAARASRDAYDRWIKA 104

Query: 90  NDKAKVYILANIFDVLAKKHDIMVTAREIIDSL 123
           NDKA VYIL +I DVL+KKH+ MVTAREI+DSL
Sbjct: 105 NDKANVYILTSISDVLSKKHESMVTAREIMDSL 137

[Close]

BLAST of Moc01g14590 vs. NCBI nr
Match: XP_022158197.1 (uncharacterized protein LOC111024734 [Momordica charantia])

HSP 1 Score: 141.4 bits (355), Expect = 5.3e-30
Identity = 68/93 (73.12%), Postives = 81/93 (87.10%), Query Frame = 0


Query: 30  IALLAAEKLNGGNYPQWKMNLNRILVVDDLRFVLTKECPQAPMSNAVRASQDAYDRWIEA 89
           IALLAA+KLNG NY QWK NLN ILV+DDLRFVL ++CPQAP+SNA  A ++AYDRWI++
Sbjct: 6   IALLAAQKLNGENYRQWKSNLNTILVIDDLRFVLQEDCPQAPVSNATVAVRNAYDRWIKS 65

Query: 90  NDKAKVYILANIFDVLAKKHDIMVTAREIIDSL 123
           NDKAKVYILA+I DVLAKKH+  VT +EI+DSL
Sbjct: 66  NDKAKVYILASISDVLAKKHEDTVTTKEIMDSL 98

[Close]

BLAST of Moc01g14590 vs. NCBI nr
Match: KAA0035676.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK30868.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 7.0e-30
Identity = 65/96 (67.71%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 27  SKSIALLAAEKLNGGNYPQWKMNLNRILVVDDLRFVLTKECPQAPMSNAVRASQDAYDRW 86
           S  + LLA++KLNG NY  WK NLN ILVVDDLRF+LT+ECPQ P SNA RAS++AYDRW
Sbjct: 3   SSIVQLLASKKLNGDNYATWKSNLNTILVVDDLRFILTEECPQTPTSNANRASREAYDRW 62

Query: 87  IEANDKAKVYILANIFDVLAKKHDIMVTAREIIDSL 123
           I+AN+KA+VYILA++ DVLAKKH+ + T +EI+DSL
Sbjct: 63  IKANEKARVYILASMSDVLAKKHECLATTKEIVDSL 98

[Close]

BLAST of Moc01g14590 vs. ExPASy TrEMBL
Match: A0A6J1DVX8 (uncharacterized protein LOC111023591 OS=Momordica charantia OX=3673 GN=LOC111023591 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.6e-35
Identity = 79/97 (81.44%), Postives = 86/97 (88.66%), Query Frame = 0


Query: 26  MSKSIALLAAEKLNGGNYPQWKMNLNRILVVDDLRFVLTKECPQAPMSNAVRASQDAYDR 85
           MSKSIALLAA+KLN  NY QWK NLN ILVVDDLRFVLT++CPQAP SNA RASQDAYDR
Sbjct: 1   MSKSIALLAAKKLNDKNYTQWKTNLNTILVVDDLRFVLTEKCPQAPTSNAARASQDAYDR 60

Query: 86  WIEANDKAKVYILANIFDVLAKKHDIMVTAREIIDSL 123
           WI+ANDKAK+YILA I +VLAKKH  MVTAREI+DSL
Sbjct: 61  WIKANDKAKIYILATISNVLAKKHKSMVTAREIMDSL 97

[Close]

BLAST of Moc01g14590 vs. ExPASy TrEMBL
Match: A0A6J1DWL4 (uncharacterized protein LOC111024739 OS=Momordica charantia OX=3673 GN=LOC111024739 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.5e-33
Identity = 75/93 (80.65%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 30  IALLAAEKLNGGNYPQWKMNLNRILVVDDLRFVLTKECPQAPMSNAVRASQDAYDRWIEA 89
           IALLA EKLNG NY QWK NLN ILVVDDLRFVLT+EC Q P  NAVRAS+DAYDRWI+A
Sbjct: 6   IALLAIEKLNGKNYTQWKTNLNAILVVDDLRFVLTEECRQPPTPNAVRASRDAYDRWIKA 65

Query: 90  NDKAKVYILANIFDVLAKKHDIMVTAREIIDSL 123
           NDKAKVYI A+I DVLAKKHD MVT REI+DSL
Sbjct: 66  NDKAKVYIFASISDVLAKKHDRMVTTREIMDSL 98

[Close]

BLAST of Moc01g14590 vs. ExPASy TrEMBL
Match: A0A6J1DWI4 (uncharacterized protein LOC111024145 OS=Momordica charantia OX=3673 GN=LOC111024145 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.2e-32
Identity = 72/93 (77.42%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 30  IALLAAEKLNGGNYPQWKMNLNRILVVDDLRFVLTKECPQAPMSNAVRASQDAYDRWIEA 89
           IALLAAEK N  NY QWK NLN ILVVDDLRF+LT+ECPQAP  NA RAS+DAYDRWI+A
Sbjct: 45  IALLAAEKFNSENYTQWKTNLNTILVVDDLRFILTEECPQAPTPNAARASRDAYDRWIKA 104

Query: 90  NDKAKVYILANIFDVLAKKHDIMVTAREIIDSL 123
           NDKA VYIL +I DVL+KKH+ MVTAREI+DSL
Sbjct: 105 NDKANVYILTSISDVLSKKHESMVTAREIMDSL 137

[Close]

BLAST of Moc01g14590 vs. ExPASy TrEMBL
Match: A0A6J1DWL0 (uncharacterized protein LOC111024734 OS=Momordica charantia OX=3673 GN=LOC111024734 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.6e-30
Identity = 68/93 (73.12%), Postives = 81/93 (87.10%), Query Frame = 0


Query: 30  IALLAAEKLNGGNYPQWKMNLNRILVVDDLRFVLTKECPQAPMSNAVRASQDAYDRWIEA 89
           IALLAA+KLNG NY QWK NLN ILV+DDLRFVL ++CPQAP+SNA  A ++AYDRWI++
Sbjct: 6   IALLAAQKLNGENYRQWKSNLNTILVIDDLRFVLQEDCPQAPVSNATVAVRNAYDRWIKS 65

Query: 90  NDKAKVYILANIFDVLAKKHDIMVTAREIIDSL 123
           NDKAKVYILA+I DVLAKKH+  VT +EI+DSL
Sbjct: 66  NDKAKVYILASISDVLAKKHEDTVTTKEIMDSL 98

[Close]

BLAST of Moc01g14590 vs. ExPASy TrEMBL
Match: A0A5A7T0E9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00680 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.4e-30
Identity = 65/96 (67.71%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 27  SKSIALLAAEKLNGGNYPQWKMNLNRILVVDDLRFVLTKECPQAPMSNAVRASQDAYDRW 86
           S  + LLA++KLNG NY  WK NLN ILVVDDLRF+LT+ECPQ P SNA RAS++AYDRW
Sbjct: 3   SSIVQLLASKKLNGDNYATWKSNLNTILVVDDLRFILTEECPQTPTSNANRASREAYDRW 62

Query: 87  IEANDKAKVYILANIFDVLAKKHDIMVTAREIIDSL 123
           I+AN+KA+VYILA++ DVLAKKH+ + T +EI+DSL
Sbjct: 63  IKANEKARVYILASMSDVLAKKHECLATTKEIVDSL 98

The following BLAST results are available for this feature:

BLAST of Moc01g14590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156751.1	3.2e-35	81.44	uncharacterized protein LOC111023591 [Momordica charantia]	[more]
XP_022158202.1	1.1e-32	80.65	uncharacterized protein LOC111024739 [Momordica charantia]	[more]
XP_022157449.1	2.6e-32	77.42	uncharacterized protein LOC111024145 [Momordica charantia]	[more]
XP_022158197.1	5.3e-30	73.12	uncharacterized protein LOC111024734 [Momordica charantia]	[more]
KAA0035676.1	7.0e-30	67.71	gag/pol protein [Cucumis melo var. makuwa] >TYK30868.1 gag/pol protein [Cucumis ...	[more]

BLAST of Moc01g14590 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc01g14590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DVX8	1.6e-35	81.44	uncharacterized protein LOC111023591 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DWL4	5.5e-33	80.65	uncharacterized protein LOC111024739 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DWI4	1.2e-32	77.42	uncharacterized protein LOC111024145 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DWL0	2.6e-30	73.12	uncharacterized protein LOC111024734 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A5A7T0E9	3.4e-30	67.71	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G0068...	[more]

BLAST of Moc01g14590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc01g14590.1	Moc01g14590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding