Moc01g13750 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc01g13750
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionzinc finger BED domain-containing protein RICESLEEPER 2-like isoform X2
Locationchr1: 8544166 .. 8546423 (-)
RNA-Seq ExpressionMoc01g13750
SyntenyMoc01g13750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTTTCTTATGTATTGTTTCACTCAACTATTCGAAGCTAATGTTGCAAAGGAAACAGGAAAGAAAGTGGAAGATGTTTTGAGACAACTATTTACTGAGTATAATTTGTCTATGCCTAAGAATGTTTCTTCTACTTCAAATGGTCGGATGAGTCAATCTATTGCTGCTTCTACTAGTGATAGTGTTGTACAGCCTTTCCGCTTTCAAGTCAGTAATATGACAAATTATAAAAATAATGTTGATGTGGATTCAGAGGTGGAACGTTACTTGTTAGAGCATAATACAGAAGATGATGAGAATTTTAACATCTTAGACTGGTGGAAAGTTAACTCTTCTAAATATAGGGTTCTTAGCAAGGTTGCAAGAGATGTTTTAGCAATTCCAGTGTCTACTGTTGCTTCTGAGTCTGCATTTAGTACTAGTGGGAGAGTAATTGATCCTTTTCGCTCCACGTTGGCTCCAACTACAGTTGAGGCACTTATTTGTGCACAAAATTGGCTACGCTCAAATGCTATTACTATTAACCTTCGATCGCATTTGGAAGAAGTTTGTCGCGTTGAAGAAGATATGAAACTTCATTAAAGAATTATTTTATGTTTTGTAATATTAATAAGCTAAATATAAATTCTTTTTATTTTTGCAGATTTCAACAAATTTACATTAGATGAAGTAACAAATAATAACATGCACAAGACTACGAGAGAAAATGATAATGTTTCATGAAATATTATTACTTTCATGTTTAGGTTTATATTTTATTTACAATTTAAAACTTTATCGTGTATCTTAAATTTTATTGTTTATTTTAAAATTTGGACTTATTGCTACTCAATACTTGATAGTTATTCACTTTTATTTATGAATTATGATTTGTATTTTCGTTAGCAAATAACATTATTTTTTTCTCTTTAATTTTTGGGATTGCAGCACTTGGATTAAGGATACTTTTTAATTTTTATGATAAATTTTTAAAATTTTTTAATACCCAGACTTTCAAGTTTCAATTGCAATGTGTAAGACTAAGTGACGTTCTTGTTAAATGTTAATTGTTATTAAATTATGCTCTCATAAAGAAGTTATTTTTTGTCTTCGGCTAGACAATCAAGTCCACCAGAACCAAAGCAAATTTAAAATTAGAAAAAAAAAGAAGTTGAAAGGCCCACAGCCCGCATCGCCAGCCCACTTGCCCTAAGCCCCAAACAAGCAAACAAGTGCAAACCCGCCCGCCCCGACCCGAACCCGCGCGCATCAGCCTGTTGTGCATGCATGCAGTTTACCCGCCAAGCCGAACCGACGAACCCGACGGTTCTTTTACCGGTTCGGTGCGGTTTTCGAACAAATTATCGGTCGGCTCGGTTTTTTATTATTTATTCTATATTGTTCGTTTCGGCTTTCGGTTCTGCGATAAACCCGACCGAACCGAGCCGTTTACACCCCTAACATGGACGTCCGAAAACTTATTTCATTCATAATGAGATGGATTGCGAGAGGTGGGTAAAGAATATGTAAGAGAGAAGGACATAACAAACGTACATGTCAAATTCACAATTTCCCGCTTTATCTTCAAGACAAACGAATGATTAAAGTCTATTTTCTTTTTAATTATTTTTTATTTTTTTAATATTGTTACAGTTTTATTAATATTGAGCTCAATTTTATATTTTTTATGTACATATTGAAACATATGCAATCATATCGTTCTTAGTATTGTGAATTAATTGCTGTTTTGTAATTCAACAAATATTTAGAGTCGTAATATAGGCTATTGTTAACATATTTTATTGCTCTGTTATATTTTTTATTGCTTTGTTATATATTCTAATGCATTGTTATATACTTTATTGCCTTGTTATTTGAAATAACTTTGCTCGCGGTAATTATGTTGTGTGCTTTATTATATTCCAGGGAACCTTTAGATTCGCATGAGTTATATTTACAAAGATCACATTGTTCACAATTAGTATGAGATATTACATCTACCATAGTTTTGTAACGTCAGAGAAGAGAGGTCGTAATATATCATAACATCAGGCTAGATCATTGTATAATGTCATATCTAAAAACAGTTTGGGTTTTAGGGAGTTGCACAGATATAGTTTACTCAATTAGATTGACATCTTATTACTGTCCTTGTTGAATGATGGAGGCATCATATGTCTAGTGGAGAGTGTATAATGACACTACAGTATGTTATTGTGCAGTTTGTGCTACCTGTTGATGGAGAACCAATTACTGGATCCTTGCAGTACGATTAG

mRNA sequence

ATGAACTTTCTTATGTATTGTTTCACTCAACTATTCGAAGCTAATGTTGCAAAGGAAACAGGAAAGAAAGTGGAAGATGTTTTGAGACAACTATTTACTGAGTATAATTTGTCTATGCCTAAGAATGTTTCTTCTACTTCAAATGGTCGGATGAGTCAATCTATTGCTGCTTCTACTAGTGATAGTGTTGTACAGCCTTTCCGCTTTCAATTTGTGCTACCTGTTGATGGAGAACCAATTACTGGATCCTTGCAGTACGATTAG

Coding sequence (CDS)

ATGAACTTTCTTATGTATTGTTTCACTCAACTATTCGAAGCTAATGTTGCAAAGGAAACAGGAAAGAAAGTGGAAGATGTTTTGAGACAACTATTTACTGAGTATAATTTGTCTATGCCTAAGAATGTTTCTTCTACTTCAAATGGTCGGATGAGTCAATCTATTGCTGCTTCTACTAGTGATAGTGTTGTACAGCCTTTCCGCTTTCAATTTGTGCTACCTGTTGATGGAGAACCAATTACTGGATCCTTGCAGTACGATTAG

Protein sequence

MNFLMYCFTQLFEANVAKETGKKVEDVLRQLFTEYNLSMPKNVSSTSNGRMSQSIAASTSDSVVQPFRFQFVLPVDGEPITGSLQYD
Homology
[Close]
BLAST of Moc01g13750 vs. NCBI nr
Match: XP_022152198.1 (zinc finger BED domain-containing protein DAYSLEEPER-like isoform X2 [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-06
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 0 

Query: 1   MNFLMYCFTQLFEANVAKETGKKVEDVLRQLFTEYNLSMPKNVSST-SNGRMSQSIAAST 60
           M FL YCF +LF+ANVA+E  KKVED+LRQLF EY+LS+  N S T S    S +   ST
Sbjct: 180 MKFLSYCFRKLFDANVAQEMCKKVEDILRQLFNEYSLSIDNNDSPTPSMFHHSNTRECST 239

Query: 61  SDSVVQPF 68
           +D+    F
Sbjct: 240 NDATDDEF 247

[Close]
BLAST of Moc01g13750 vs. NCBI nr
Match: XP_022152197.1 (zinc finger BED domain-containing protein DAYSLEEPER-like isoform X1 [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-06
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 0 

Query: 1   MNFLMYCFTQLFEANVAKETGKKVEDVLRQLFTEYNLSMPKNVSST-SNGRMSQSIAAST 60
           M FL YCF +LF+ANVA+E  KKVED+LRQLF EY+LS+  N S T S    S +   ST
Sbjct: 180 MKFLSYCFRKLFDANVAQEMCKKVEDILRQLFNEYSLSIDNNDSPTPSMFHHSNTRECST 239

Query: 61  SDSVVQPF 68
           +D+    F
Sbjct: 240 NDATDDEF 247

[Close]
BLAST of Moc01g13750 vs. NCBI nr
Match: XP_022152188.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Momordica charantia])

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-05
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 1   MNFLMYCFTQLFEANVAKETGKKVEDVLRQLFTEYNL 38
           M FL+YCF++LF ANVAKE  KKVED+LRQLF+EY L
Sbjct: 452 MKFLLYCFSELFGANVAKEMCKKVEDILRQLFSEYRL 488

[Close]
BLAST of Moc01g13750 vs. NCBI nr
Match: XP_022152189.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X2 [Momordica charantia])

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-05
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 1   MNFLMYCFTQLFEANVAKETGKKVEDVLRQLFTEYNL 38
           M FL+YCF++LF ANVAKE  KKVED+LRQLF+EY L
Sbjct: 452 MKFLLYCFSELFGANVAKEMCKKVEDILRQLFSEYRL 488

[Close]
BLAST of Moc01g13750 vs. NCBI nr
Match: XP_022152195.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Momordica charantia] >XP_022152196.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Momordica charantia])

HSP 1 Score: 58.2 bits (139), Expect = 4.2e-05
Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 1   MNFLMYCFTQLFEANVAKETGKKVEDVLRQLFTEYNL 38
           M FLMYCF++LF ANVAKE  KKVED+L++LF+EY L
Sbjct: 492 MKFLMYCFSELFGANVAKEMCKKVEDILKKLFSEYRL 528

[Close]
BLAST of Moc01g13750 vs. ExPASy TrEMBL
Match: A0A6J1DFJ0 (zinc finger BED domain-containing protein DAYSLEEPER-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111019973 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.4e-07
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 0 

Query: 1   MNFLMYCFTQLFEANVAKETGKKVEDVLRQLFTEYNLSMPKNVSST-SNGRMSQSIAAST 60
           M FL YCF +LF+ANVA+E  KKVED+LRQLF EY+LS+  N S T S    S +   ST
Sbjct: 180 MKFLSYCFRKLFDANVAQEMCKKVEDILRQLFNEYSLSIDNNDSPTPSMFHHSNTRECST 239

Query: 61  SDSVVQPF 68
           +D+    F
Sbjct: 240 NDATDDEF 247

[Close]
BLAST of Moc01g13750 vs. ExPASy TrEMBL
Match: A0A6J1DE80 (zinc finger BED domain-containing protein DAYSLEEPER-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111019973 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.4e-07
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 0 

Query: 1   MNFLMYCFTQLFEANVAKETGKKVEDVLRQLFTEYNLSMPKNVSST-SNGRMSQSIAAST 60
           M FL YCF +LF+ANVA+E  KKVED+LRQLF EY+LS+  N S T S    S +   ST
Sbjct: 180 MKFLSYCFRKLFDANVAQEMCKKVEDILRQLFNEYSLSIDNNDSPTPSMFHHSNTRECST 239

Query: 61  SDSVVQPF 68
           +D+    F
Sbjct: 240 NDATDDEF 247

[Close]
BLAST of Moc01g13750 vs. ExPASy TrEMBL
Match: A0A6J1DFA9 (zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111019968 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.0e-06
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 1   MNFLMYCFTQLFEANVAKETGKKVEDVLRQLFTEYNL 38
           M FL+YCF++LF ANVAKE  KKVED+LRQLF+EY L
Sbjct: 452 MKFLLYCFSELFGANVAKEMCKKVEDILRQLFSEYRL 488

[Close]
BLAST of Moc01g13750 vs. ExPASy TrEMBL
Match: A0A6J1DE70 (zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111019968 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.0e-06
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 1   MNFLMYCFTQLFEANVAKETGKKVEDVLRQLFTEYNL 38
           M FL+YCF++LF ANVAKE  KKVED+LRQLF+EY L
Sbjct: 452 MKFLLYCFSELFGANVAKEMCKKVEDILRQLFSEYRL 488

[Close]
BLAST of Moc01g13750 vs. ExPASy TrEMBL
Match: A0A6J1DGW5 (zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Momordica charantia OX=3673 GN=LOC111019972 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.0e-05
Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 1   MNFLMYCFTQLFEANVAKETGKKVEDVLRQLFTEYNL 38
           M FLMYCF++LF ANVAKE  KKVED+L++LF+EY L
Sbjct: 492 MKFLMYCFSELFGANVAKEMCKKVEDILKKLFSEYRL 528

The following BLAST results are available for this feature:
BLAST of Moc01g13750 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022152198.11.3e-0652.94zinc finger BED domain-containing protein DAYSLEEPER-like isoform X2 [Momordica ... [more]
XP_022152197.11.3e-0652.94zinc finger BED domain-containing protein DAYSLEEPER-like isoform X1 [Momordica ... [more]
XP_022152188.11.5e-0572.97zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Momordi... [more]
XP_022152189.11.5e-0572.97zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X2 [Momordi... [more]
XP_022152195.14.2e-0570.27zinc finger BED domain-containing protein RICESLEEPER 2-like [Momordica charanti... [more]
BLAST of Moc01g13750 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc01g13750 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DFJ06.4e-0752.94zinc finger BED domain-containing protein DAYSLEEPER-like isoform X1 OS=Momordic... [more]
A0A6J1DE806.4e-0752.94zinc finger BED domain-containing protein DAYSLEEPER-like isoform X2 OS=Momordic... [more]
A0A6J1DFA97.0e-0672.97zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X2 OS=Momor... [more]
A0A6J1DE707.0e-0672.97zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 OS=Momor... [more]
A0A6J1DGW52.0e-0570.27zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Momordica charan... [more]
BLAST of Moc01g13750 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc01g13750.1Moc01g13750.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity