Moc01g13220 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc01g13220
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr1: 8078873 .. 8079524 (-)
RNA-Seq Expression	Moc01g13220
Synteny	Moc01g13220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATTATTCATTTCTAGCGGTGAAGAGACAATGATAAATTTTATGGCAAGAACTGATGAAGCGTTACGTAGGTTGCAGAGCCAAATTGAGCAAGTGGCCGATGAGTTGAGGAATAGTCCACCAGAAGCATTGCCTACCAATATGGAAGAGCAAGGTAAGACAATCAATATATGGAGTGAGCTTGAAGATGACGAACTTGAGCTCCCAATAGACAATGATGATCCACCAATCCCTAAAGTAATAAACGAGTTATGGAAGAATAAGGAAGTTGAACTCGAGAAACCGATAAAGGTAATAGAGCATGAGGTTACAATGGACCTAAACCCATCACCTCTAAATATTGGACCACTTTTCTCTTTCCCTCGATGCCTCTTTATAGATATCCCAAGACATAAAGAAGGAAGAGTTGACCAAACCTGTCAAGGATCAAGTAAATGAAGAACTAGGAGAATATGAGATTGGTTCAGATGAAGGGTTCTATGTTAAAGTTTCACCCCAAATTCCAATTTCCAAAAATCAATGCATTCGTGTAAGTCACCTACCCCTCGAGCTAGACCTTAAAGCATATTGTGCTCTGAAGGAGGGAAACTGTGACATGGTAGTAGCAGAAGAGAGATCGGATGAGCTTGAGGAAATGAGTGAAAGTTGA

mRNA sequence

ATGCAATTATTCATTTCTAGCGGTGAAGAGACAATGATAAATTTTATGGCAAGAACTGATGAAGCGTTACGTAGGTTGCAGAGCCAAATTGAGCAAGTGGCCGATGAGTTGAGGAATAGTCCACCAGAAGCATTGCCTACCAATATGGAAGAGCAAGGTAAGACAATCAATATATGGAGTGAGCTTGAAGATGACGAACTTGAGCTCCCAATAGACAATGATGATCCACCAATCCCTAAAGTAATAAACGAGTTATGGAAGAATAAGGAAGTTGAACTCGAGAAACCGATAAAGATATCCCAAGACATAAAGAAGGAAGAGTTGACCAAACCTGTCAAGGATCAAGTAAATGAAGAACTAGGAGAATATGAGATTGGTTCAGATGAAGGGTTCTATGTTAAAGTTTCACCCCAAATTCCAATTTCCAAAAATCAATGCATTCGTGTAAGTCACCTACCCCTCGAGCTAGACCTTAAAGCATATTGTGCTCTGAAGGAGGGAAACTGTGACATGGTAGTAGCAGAAGAGAGATCGGATGAGCTTGAGGAAATGAGTGAAAGTTGA

Coding sequence (CDS)

ATGCAATTATTCATTTCTAGCGGTGAAGAGACAATGATAAATTTTATGGCAAGAACTGATGAAGCGTTACGTAGGTTGCAGAGCCAAATTGAGCAAGTGGCCGATGAGTTGAGGAATAGTCCACCAGAAGCATTGCCTACCAATATGGAAGAGCAAGGTAAGACAATCAATATATGGAGTGAGCTTGAAGATGACGAACTTGAGCTCCCAATAGACAATGATGATCCACCAATCCCTAAAGTAATAAACGAGTTATGGAAGAATAAGGAAGTTGAACTCGAGAAACCGATAAAGATATCCCAAGACATAAAGAAGGAAGAGTTGACCAAACCTGTCAAGGATCAAGTAAATGAAGAACTAGGAGAATATGAGATTGGTTCAGATGAAGGGTTCTATGTTAAAGTTTCACCCCAAATTCCAATTTCCAAAAATCAATGCATTCGTGTAAGTCACCTACCCCTCGAGCTAGACCTTAAAGCATATTGTGCTCTGAAGGAGGGAAACTGTGACATGGTAGTAGCAGAAGAGAGATCGGATGAGCTTGAGGAAATGAGTGAAAGTTGA

Protein sequence

MQLFISSGEETMINFMARTDEALRRLQSQIEQVADELRNSPPEALPTNMEEQGKTINIWSELEDDELELPIDNDDPPIPKVINELWKNKEVELEKPIKISQDIKKEELTKPVKDQVNEELGEYEIGSDEGFYVKVSPQIPISKNQCIRVSHLPLELDLKAYCALKEGNCDMVVAEERSDELEEMSES

Homology

[Close]

BLAST of Moc01g13220 vs. NCBI nr
Match: XP_022157694.1 (uncharacterized protein LOC111024352 [Momordica charantia])

HSP 1 Score: 263.5 bits (672), Expect = 1.4e-66
Identity = 147/214 (68.69%), Postives = 164/214 (76.64%), Query Frame = 0


Query: 3   LFISSGEETMINFMARTDEALRRLQSQIEQVADELRNSPPEALPTNMEEQGKTINIWSEL 62
           L + S E+TMI+FMARTDE++RRLQ Q+E + DELRNSP EALPTNMEEQG+  N  SEL
Sbjct: 8   LEVFSLEQTMIDFMARTDESIRRLQIQVELMVDELRNSPSEALPTNMEEQGEAFNERSEL 67

Query: 63  EDDELELPIDNDDPPIPKVINELWKNKEVELEKPI------------------------- 122
           EDDELELPIDNDDPPIP+VINE+WKNKEVE EKPI                         
Sbjct: 68  EDDELELPIDNDDPPIPEVINEVWKNKEVEPEKPIEVMEHELTMDLNPSPLNIGPLFPFP 127

Query: 123 ----KISQDIKKEELTKPVKDQVNEELGEYEIGSDEGFYVKVSPQIPISKNQCIRVSHLP 182
               +I+Q I+KEELTKPV+DQVN ELGE  IGSDEGFYVKVS QIPI KNQCI+VSHLP
Sbjct: 128 RCSLEITQYIQKEELTKPVEDQVNGELGEDVIGSDEGFYVKVSSQIPIFKNQCIQVSHLP 187

Query: 183 LELDLKAYCALKEGNCDMVVAEERSDELEEMSES 188
           LELDLKAYCALKE N DMVVAEERS+ LEEM+ES
Sbjct: 188 LELDLKAYCALKERNFDMVVAEERSNVLEEMNES 221

[Close]

BLAST of Moc01g13220 vs. NCBI nr
Match: XP_022149401.1 (uncharacterized protein LOC111017826 [Momordica charantia])

HSP 1 Score: 98.6 bits (244), Expect = 6.1e-17
Identity = 60/130 (46.15%), Postives = 76/130 (58.46%), Query Frame = 0


Query: 60  SELEDDELELPIDNDDPPIPKVINELWKNKEVELEKPI---------------------- 119
           SELE DE EL +DNDDPP P+V+NE+WKNK+VE E+PI                      
Sbjct: 20  SELEYDEPELLVDNDDPPTPEVMNEVWKNKKVEEEEPIEVIEHKVAIDLSPSPLKIGPFF 79

Query: 120 -------KISQDIKKEELTKPVKDQVNEELGEYEIGSDEGFYVK-VSPQIPISKNQCIRV 160
                  +I+ DIKKEELT+   D++  E+GE E+GSDEGFY K     I + KN+ I+V
Sbjct: 80  PFPQRSLEINNDIKKEELTQHFNDKIKGEIGEDEVGSDEGFYFKEEKTTIQLFKNKFIQV 139

[Close]

BLAST of Moc01g13220 vs. ExPASy TrEMBL
Match: A0A6J1DXA5 (uncharacterized protein LOC111024352 OS=Momordica charantia OX=3673 GN=LOC111024352 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 6.9e-67
Identity = 147/214 (68.69%), Postives = 164/214 (76.64%), Query Frame = 0


Query: 3   LFISSGEETMINFMARTDEALRRLQSQIEQVADELRNSPPEALPTNMEEQGKTINIWSEL 62
           L + S E+TMI+FMARTDE++RRLQ Q+E + DELRNSP EALPTNMEEQG+  N  SEL
Sbjct: 8   LEVFSLEQTMIDFMARTDESIRRLQIQVELMVDELRNSPSEALPTNMEEQGEAFNERSEL 67

Query: 63  EDDELELPIDNDDPPIPKVINELWKNKEVELEKPI------------------------- 122
           EDDELELPIDNDDPPIP+VINE+WKNKEVE EKPI                         
Sbjct: 68  EDDELELPIDNDDPPIPEVINEVWKNKEVEPEKPIEVMEHELTMDLNPSPLNIGPLFPFP 127

Query: 123 ----KISQDIKKEELTKPVKDQVNEELGEYEIGSDEGFYVKVSPQIPISKNQCIRVSHLP 182
               +I+Q I+KEELTKPV+DQVN ELGE  IGSDEGFYVKVS QIPI KNQCI+VSHLP
Sbjct: 128 RCSLEITQYIQKEELTKPVEDQVNGELGEDVIGSDEGFYVKVSSQIPIFKNQCIQVSHLP 187

Query: 183 LELDLKAYCALKEGNCDMVVAEERSDELEEMSES 188
           LELDLKAYCALKE N DMVVAEERS+ LEEM+ES
Sbjct: 188 LELDLKAYCALKERNFDMVVAEERSNVLEEMNES 221

[Close]

BLAST of Moc01g13220 vs. ExPASy TrEMBL
Match: A0A6J1D894 (uncharacterized protein LOC111017826 OS=Momordica charantia OX=3673 GN=LOC111017826 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.9e-17
Identity = 60/130 (46.15%), Postives = 76/130 (58.46%), Query Frame = 0


Query: 60  SELEDDELELPIDNDDPPIPKVINELWKNKEVELEKPI---------------------- 119
           SELE DE EL +DNDDPP P+V+NE+WKNK+VE E+PI                      
Sbjct: 20  SELEYDEPELLVDNDDPPTPEVMNEVWKNKKVEEEEPIEVIEHKVAIDLSPSPLKIGPFF 79

Query: 120 -------KISQDIKKEELTKPVKDQVNEELGEYEIGSDEGFYVK-VSPQIPISKNQCIRV 160
                  +I+ DIKKEELT+   D++  E+GE E+GSDEGFY K     I + KN+ I+V
Sbjct: 80  PFPQRSLEINNDIKKEELTQHFNDKIKGEIGEDEVGSDEGFYFKEEKTTIQLFKNKFIQV 139

The following BLAST results are available for this feature:

BLAST of Moc01g13220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157694.1	1.4e-66	68.69	uncharacterized protein LOC111024352 [Momordica charantia]	[more]
XP_022149401.1	6.1e-17	46.15	uncharacterized protein LOC111017826 [Momordica charantia]	[more]

BLAST of Moc01g13220 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc01g13220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DXA5	6.9e-67	68.69	uncharacterized protein LOC111024352 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1D894	2.9e-17	46.15	uncharacterized protein LOC111017826 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]

BLAST of Moc01g13220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 16..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc01g13220.1	Moc01g13220.1	mRNA