Moc01g13170 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc01g13170
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionextensin-like
Locationchr1: 8063201 .. 8064284 (-)
RNA-Seq ExpressionMoc01g13170
SyntenyMoc01g13170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAACCAGAAACCCTAACATCACCATGTCTAGAATCAAACAGAAAGCTAACCGGAAAAAGGCGTACAAGTTGGAGGTCTCTACGAGTGAAGGTTCTAGCGATAACTTCCAGGAGGCCAGGGAGACAATTCTGCCGCCAGAAGCCTCGGACAAGCGGAACCCTGTCCAGCAAACTCCGACTAGTTCGGAGCACACTCCCACTTATTCGAAACTTCTGCCACCGCCTCCACTAGTCGTCAGTTCTCAAGTAAGTGCTCCAAACCCCAGCACCCCTCTTCAACAAGACCAAACTGAAAACCCTTCCCCTCTGTTGAAAACATCCCGTTCGATCAGCCCTACTAAATCGACAGCTCCACCATCCGCTCCCAATCTCACAAACCCCAGCTAACCCCACTCCCATATCCACTTTCCACTCACCCATTGTCGTCGAGGAGATCCACCCGCCGGTGGTTCCTAAAACCACATCTACCACCGGCCCTACCTCGTGTACCCACAAAAATAAATGCCCATCATCGTCTATATCTCCCCAGCACAGCCAAAAAGCAAGAAGCCCCAAAAGTACCTGTGCCCCCACCCGCTAAATCGAAGTCGGAAAGTCCGCCTCCCCATTTGAGGGGAAGCAGCACAGTAGCATGCCCTCTGTTTTGCAGGTACCACCAACGCCTCGCTCCACCAAGCGCATTAACATCATGCCTTCACACCAAGCAGCATTTCAAAAGTTTGTGGACCCAGCGGTGCGGGCTAACTACAGAGTCATCAAGGGCAGAGATCTTTACCTAGAAAAGGGCTTTATCGAGGCGGATATGCCGCAATTTATTAAGGAGGGAGTGGCGAAGCTGCAGTGGGAGCGTTTCTATACACCTCCTATGCCAATGCTGACGGAACTTGTTCGGGTGTTCTACTCGAACTTTAATGCTGATAGGGTGGGCCACACAATCCTCAGGGATGTCGAGTTGGATTGGACGCCAGAGAGGATCAACAAAATCCTCAAGCATCCAGCAACCCACGCGCTGATTACAATGAGCTTGTCCAACAGCCCTCTATCCGCGAGCTTTACCACGCTCTGCAACTGGAAGGAGTAG

mRNA sequence

ATGCAAACCAGAAACCCTAACATCACCATGTCTAGAATCAAACAGAAAGCTAACCGGAAAAAGGCGTACAAGTTGGAGGTCTCTACGAGTGAAGGTTCTAGCGATAACTTCCAGGAGGCCAGGGAGACAATTCTGCCGCCAGAAGCCTCGGACAAGCGGAACCCTGTCCAGCAAACTCCGACTAGTTCGGAGCACACTCCCACTTATTCGAAACTTCTGCCACCGCCTCCACTAGTCGTCAGTTCTCAAGTACCACCAACGCCTCGCTCCACCAAGCGCATTAACATCATGCCTTCACACCAAGCAGCATTTCAAAAGTTTGTGGACCCAGCGGTGCGGGCTAACTACAGAGTCATCAAGGGCAGAGATCTTTACCTAGAAAAGGGCTTTATCGAGGCGGATATGCCGCAATTTATTAAGGAGGGAGTGGCGAAGCTGCAGTGGGAGCGTTTCTATACACCTCCTATGCCAATGCTGACGGAACTTGTTCGGGTGTTCTACTCGAACTTTAATGCTGATAGGGTGGGCCACACAATCCTCAGGGATGTCGAGTTGGATTGGACGCCAGAGAGGATCAACAAAATCCTCAAGCATCCAGCAACCCACGCGCTGATTACAATGAGCTTGTCCAACAGCCCTCTATCCGCGAGCTTTACCACGCTCTGCAACTGGAAGGAGTAG

Coding sequence (CDS)

ATGCAAACCAGAAACCCTAACATCACCATGTCTAGAATCAAACAGAAAGCTAACCGGAAAAAGGCGTACAAGTTGGAGGTCTCTACGAGTGAAGGTTCTAGCGATAACTTCCAGGAGGCCAGGGAGACAATTCTGCCGCCAGAAGCCTCGGACAAGCGGAACCCTGTCCAGCAAACTCCGACTAGTTCGGAGCACACTCCCACTTATTCGAAACTTCTGCCACCGCCTCCACTAGTCGTCAGTTCTCAAGTACCACCAACGCCTCGCTCCACCAAGCGCATTAACATCATGCCTTCACACCAAGCAGCATTTCAAAAGTTTGTGGACCCAGCGGTGCGGGCTAACTACAGAGTCATCAAGGGCAGAGATCTTTACCTAGAAAAGGGCTTTATCGAGGCGGATATGCCGCAATTTATTAAGGAGGGAGTGGCGAAGCTGCAGTGGGAGCGTTTCTATACACCTCCTATGCCAATGCTGACGGAACTTGTTCGGGTGTTCTACTCGAACTTTAATGCTGATAGGGTGGGCCACACAATCCTCAGGGATGTCGAGTTGGATTGGACGCCAGAGAGGATCAACAAAATCCTCAAGCATCCAGCAACCCACGCGCTGATTACAATGAGCTTGTCCAACAGCCCTCTATCCGCGAGCTTTACCACGCTCTGCAACTGGAAGGAGTAG

Protein sequence

MQTRNPNITMSRIKQKANRKKAYKLEVSTSEGSSDNFQEARETILPPEASDKRNPVQQTPTSSEHTPTYSKLLPPPPLVVSSQVPPTPRSTKRINIMPSHQAAFQKFVDPAVRANYRVIKGRDLYLEKGFIEADMPQFIKEGVAKLQWERFYTPPMPMLTELVRVFYSNFNADRVGHTILRDVELDWTPERINKILKHPATHALITMSLSNSPLSASFTTLCNWKE
Homology
[Close]
BLAST of Moc01g13170 vs. NCBI nr
Match: XP_022154805.1 (extensin-like [Momordica charantia])

HSP 1 Score: 68.6 bits (166), Expect = 8.1e-08
Identity = 46/91 (50.55%), Postives = 60/91 (65.93%), Query Frame = 0 

Query: 10 MSRIKQKANRKKAYKLEVSTSEGSSDNFQEARETILPPEASDKRNPVQQTPTSSEHTPTY 69
          M RIK +ANRK+  KLE+S S GS+ +F+EA ETI P EA +     +Q+PTSSEHTPT 
Sbjct: 1  MPRIKHRANRKRTLKLELSASSGSNGDFKEAAETI-PSEAIE-----EQSPTSSEHTPTE 60

Query: 70 SKLLPPPPLVVSSQVPP------TPRSTKRI 95
          +++LPPPP V S Q         +P  TK+I
Sbjct: 61 AEILPPPPPVASPQTKRPAQSVLSPSPTKKI 85

[Close]
BLAST of Moc01g13170 vs. ExPASy TrEMBL
Match: A0A6J1DKP0 (extensin-like OS=Momordica charantia OX=3673 GN=LOC111021971 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.9e-08
Identity = 46/91 (50.55%), Postives = 60/91 (65.93%), Query Frame = 0 

Query: 10 MSRIKQKANRKKAYKLEVSTSEGSSDNFQEARETILPPEASDKRNPVQQTPTSSEHTPTY 69
          M RIK +ANRK+  KLE+S S GS+ +F+EA ETI P EA +     +Q+PTSSEHTPT 
Sbjct: 1  MPRIKHRANRKRTLKLELSASSGSNGDFKEAAETI-PSEAIE-----EQSPTSSEHTPTE 60

Query: 70 SKLLPPPPLVVSSQVPP------TPRSTKRI 95
          +++LPPPP V S Q         +P  TK+I
Sbjct: 61 AEILPPPPPVASPQTKRPAQSVLSPSPTKKI 85

The following BLAST results are available for this feature:
BLAST of Moc01g13170 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022154805.18.1e-0850.55extensin-like [Momordica charantia][more]
BLAST of Moc01g13170 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc01g13170 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DKP03.9e-0850.55extensin-like OS=Momordica charantia OX=3673 GN=LOC111021971 PE=4 SV=1[more]
BLAST of Moc01g13170 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc01g13170.1Moc01g13170.1mRNA