Moc01g12830 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc01g12830
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr1: 7807015 .. 7808140 (-)
RNA-Seq Expression	Moc01g12830
Synteny	Moc01g12830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATTCCACGCGAGGTTGATGCAAAGATTGCAGAAGATCACGGATAGGGAGGCCAAGGCAGCGAACAACCTCATAGGTAGGCCCGCCACGAAAACATAGCCTTACCTCCTACTCATCTGCAAGGGAATAAGGCCCATCATGGCCGAGGTGAAGCGTCGAAAAGGACTTCACGTAAGTCTACTCCAGCAATGGATCCTAATGTCCTCGCCACCCTCTAGTGCAAGCTCAATGACATGCGTACTTGGGTGCGCACGATGGAGGAAACCTACAATGACGTGATGCGAGCTAATCGTACTGGGTCCTAGTCTAAGGTCTCAAAGGACGAGGAGGACCAGCATCTCGGAGGGGAAACCAGAGATCCTCCTCTACACCTTGATCGTGATGATCAGTATCTCGATGATAATGAGAGAGCTGATTATAGTCGTCGAGAGGGTGACCTTAGAAAGGTTCTAAAGACAAGAAGAAATAGAACTCTGCCTTTATAATCGAGGACGTCTCTCCTTCTTACTCACACAAAAATTCGAACTTTAAAGCTCAATCTCCTTACAACCCGCTTGCACCTGAAGGATTGATAACGAGGGAAGAGTTCAACCTGATGAAGAATAAATTTGACGCACAGGTTAAAGCTCTCAAGGCGAGGTGCCAGAAGAAAGATAATGTGTTTGATGATGGCGAGATGGGCGAGTCGCCATTCACCTTGGACATTCTTGAGGAACCTAAACCTGCCATGTTCAAAACGTTTGCCATGAAACCCTACGATGGATCCAAGGATCCAAAAGATTATGTGGAGGTCTTTAAAGGCTTCATAGACTTTCAGGCGGGTTCGGATGCTATGAAATGTCGAGCATTCCATATTGCTTTGATTGAGAGTACCTGGCTCTGGTATAGAAGGCTGTCGACCAGGTCGATCTCGACCTACAGTCAGCTGAGAAAGGAGTTCATAAGTCAATTCTCTTCTCGACAGTATGACCAAAAGACAGCCACACATCTTGCCACCATTCGACAAAAGGAGGATGAGACACTGATGGAGTACGTGACCAAGTTCCAAGTGGAAGTTGAAGGTCCTACTTCGACGACTCAGCCATGTGCTACTTTCTCTATGGCCTGGCCAATGAGACCTTGA

mRNA sequence

ATGGCATTCCACGCGAGGTTGATGCAAAGATTGCAGAAGATCACGGATAGGGAGGCCAAGGCAGCGAACAACCTCATAGCGTCGAAAAGGACTTCACGTAAGTCTACTCCAGCAATGGATCCTAATTCTAAGGTCTCAAAGGACGAGGAGGACCAGCATCTCGGAGGGGAAACCAGAGATCCTCCTCTACACCTTGATCGTGATGATCAGTATCTCGATGATAATGAGAGAGCTGATTATAGTCGTCGAGAGGGTGACCTTAGAAAGGTTAAAGCTCTCAAGGCGAGGTGCCAGAAGAAAGATAATGTGTTTGATGATGGCGAGATGGGCGAGTCGCCATTCACCTTGGACATTCTTGAGGAACCTAAACCTGCCATGTTCAAAACGTTTGCCATGAAACCCTACGATGGATCCAAGGATCCAAAAGATTATGTGGAGGTCTTTAAAGGCTTCATAGACTTTCAGGCGGGTTCGGATGCTATGAAATGTCGAGCATTCCATATTGCTTTGATTGAGAGTACCTGGCTCTGGTATAGAAGGCTGTCGACCAGGTCGATCTCGACCTACAGTCAGCTGAGAAAGGAGTTCATAAGTCAATTCTCTTCTCGACAGTATGACCAAAAGACAGCCACACATCTTGCCACCATTCGACAAAAGGAGGATGAGACACTGATGGAGTACGTGACCAAGTTCCAAGTGGAAGTTGAAGGTCCTACTTCGACGACTCAGCCATGTGCTACTTTCTCTATGGCCTGGCCAATGAGACCTTGA

Coding sequence (CDS)

ATGGCATTCCACGCGAGGTTGATGCAAAGATTGCAGAAGATCACGGATAGGGAGGCCAAGGCAGCGAACAACCTCATAGCGTCGAAAAGGACTTCACGTAAGTCTACTCCAGCAATGGATCCTAATTCTAAGGTCTCAAAGGACGAGGAGGACCAGCATCTCGGAGGGGAAACCAGAGATCCTCCTCTACACCTTGATCGTGATGATCAGTATCTCGATGATAATGAGAGAGCTGATTATAGTCGTCGAGAGGGTGACCTTAGAAAGGTTAAAGCTCTCAAGGCGAGGTGCCAGAAGAAAGATAATGTGTTTGATGATGGCGAGATGGGCGAGTCGCCATTCACCTTGGACATTCTTGAGGAACCTAAACCTGCCATGTTCAAAACGTTTGCCATGAAACCCTACGATGGATCCAAGGATCCAAAAGATTATGTGGAGGTCTTTAAAGGCTTCATAGACTTTCAGGCGGGTTCGGATGCTATGAAATGTCGAGCATTCCATATTGCTTTGATTGAGAGTACCTGGCTCTGGTATAGAAGGCTGTCGACCAGGTCGATCTCGACCTACAGTCAGCTGAGAAAGGAGTTCATAAGTCAATTCTCTTCTCGACAGTATGACCAAAAGACAGCCACACATCTTGCCACCATTCGACAAAAGGAGGATGAGACACTGATGGAGTACGTGACCAAGTTCCAAGTGGAAGTTGAAGGTCCTACTTCGACGACTCAGCCATGTGCTACTTTCTCTATGGCCTGGCCAATGAGACCTTGA

Protein sequence

MAFHARLMQRLQKITDREAKAANNLIASKRTSRKSTPAMDPNSKVSKDEEDQHLGGETRDPPLHLDRDDQYLDDNERADYSRREGDLRKVKALKARCQKKDNVFDDGEMGESPFTLDILEEPKPAMFKTFAMKPYDGSKDPKDYVEVFKGFIDFQAGSDAMKCRAFHIALIESTWLWYRRLSTRSISTYSQLRKEFISQFSSRQYDQKTATHLATIRQKEDETLMEYVTKFQVEVEGPTSTTQPCATFSMAWPMRP

Homology

[Close]

BLAST of Moc01g12830 vs. NCBI nr
Match: XP_022159250.1 (uncharacterized protein LOC111025663 [Momordica charantia])

HSP 1 Score: 221.9 bits (564), Expect = 6.5e-54
Identity = 111/146 (76.03%), Postives = 124/146 (84.93%), Query Frame = 0


Query: 89  KVKALKARCQKKDNVFDDGEMGESPFTLDILEEPKPAMFKTFAMKPYDGSKDPKDYVEVF 148
           +V+ALKARC+KK+  FDDG++GESPFT DILE P P  FKT  MKPYDGSKDPKDYVEVF
Sbjct: 8   QVEALKARCEKKECSFDDGDLGESPFTSDILEAPIPPKFKTPTMKPYDGSKDPKDYVEVF 67

Query: 149 KGFIDFQAGSDAMKCRAFHIALIESTWLWYRRLSTRSISTYSQLRKEFISQFSSRQYDQK 208
           +G +DFQA +DA+KCRAF IAL +S  LWYRRL  RSISTYSQLRKEFISQFSSR YD+K
Sbjct: 68  EGLMDFQAATDAIKCRAFQIALTDSARLWYRRLPARSISTYSQLRKEFISQFSSRHYDRK 127

Query: 209 TATHLATIRQKEDETLMEYVTKFQVE 235
           TATHLATIRQKE ETL EYVT+F  E
Sbjct: 128 TATHLATIRQKEGETLREYVTRFLEE 153

[Close]

BLAST of Moc01g12830 vs. NCBI nr
Match: XP_022151719.1 (uncharacterized protein LOC111019634 [Momordica charantia])

HSP 1 Score: 213.4 bits (542), Expect = 2.3e-51
Identity = 107/146 (73.29%), Postives = 121/146 (82.88%), Query Frame = 0


Query: 89  KVKALKARCQKKDNVFDDGEMGESPFTLDILEEPKPAMFKTFAMKPYDGSKDPKDYVEVF 148
           +V+ALKA+C+KK++ FDDG++GESPFT DILE   P  FKT  MKPYDGSKDPKDYVEVF
Sbjct: 122 QVEALKAKCEKKESSFDDGDLGESPFTSDILEALIPLKFKTPTMKPYDGSKDPKDYVEVF 181

Query: 149 KGFIDFQAGSDAMKCRAFHIALIESTWLWYRRLSTRSISTYSQLRKEFISQFSSRQYDQK 208
           +G +DFQA +DA+KCR F IAL  S  LWYRRL  RSISTYSQLRKEFI QFSSR YD+K
Sbjct: 182 EGLMDFQAATDAIKCRDFQIALTGSARLWYRRLPARSISTYSQLRKEFIIQFSSRHYDRK 241

Query: 209 TATHLATIRQKEDETLMEYVTKFQVE 235
           TATHL TIRQKE ETL EYVT+FQ E
Sbjct: 242 TATHLTTIRQKEGETLREYVTRFQEE 267

[Close]

BLAST of Moc01g12830 vs. NCBI nr
Match: XP_022156542.1 (uncharacterized protein LOC111023421 [Momordica charantia])

HSP 1 Score: 213.4 bits (542), Expect = 2.3e-51
Identity = 106/159 (66.67%), Postives = 130/159 (81.76%), Query Frame = 0


Query: 77  RADYSRREGDL-RKVKALKARCQKKDNVFDDGEMGESPFTLDILEEPKPAMFKTFAMKPY 136
           R ++ +  G+L  +V+ALKA+C++KD+  +DG++GESPFT D+LE P P  FK   +KPY
Sbjct: 30  REEFDQLRGELDAQVEALKAKCEQKDDSLNDGDLGESPFTSDVLEAPIPPKFKAPTVKPY 89

Query: 137 DGSKDPKDYVEVFKGFIDFQAGSDAMKCRAFHIALIESTWLWYRRLSTRSISTYSQLRKE 196
           DG+KDPKDYVEVF+G +DFQA SDA+KCRAF IAL  S  LWYRRL  RSISTYSQLR+E
Sbjct: 90  DGTKDPKDYVEVFEGLMDFQAASDAIKCRAFQIALTGSARLWYRRLPXRSISTYSQLRRE 149

Query: 197 FISQFSSRQYDQKTATHLATIRQKEDETLMEYVTKFQVE 235
           F++QFSSR YD+KTATHLATIRQKE ETL EYVT+FQ E
Sbjct: 150 FLAQFSSRHYDKKTATHLATIRQKEGETLREYVTRFQEE 188

[Close]

BLAST of Moc01g12830 vs. NCBI nr
Match: XP_022156088.1 (uncharacterized protein LOC111023060 [Momordica charantia])

HSP 1 Score: 211.8 bits (538), Expect = 6.7e-51
Identity = 105/146 (71.92%), Postives = 120/146 (82.19%), Query Frame = 0


Query: 89  KVKALKARCQKKDNVFDDGEMGESPFTLDILEEPKPAMFKTFAMKPYDGSKDPKDYVEVF 148
           +V+ALK RC+KK++ FDDG++GESPFT DILE   P  FKT  MK YDGSKDPKDYVEVF
Sbjct: 114 QVEALKVRCEKKESAFDDGDLGESPFTSDILEASIPPKFKTPTMKSYDGSKDPKDYVEVF 173

Query: 149 KGFIDFQAGSDAMKCRAFHIALIESTWLWYRRLSTRSISTYSQLRKEFISQFSSRQYDQK 208
           +G +DFQA +DA+KCRAF IAL  S  LWYRRL  RSISTYSQLRKEFISQF SR YD+K
Sbjct: 174 EGLMDFQAATDAIKCRAFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFFSRHYDRK 233

Query: 209 TATHLATIRQKEDETLMEYVTKFQVE 235
           T THLATIRQKE +TL EY+T+FQ E
Sbjct: 234 TTTHLATIRQKEGKTLKEYITRFQEE 259

[Close]

BLAST of Moc01g12830 vs. NCBI nr
Match: XP_022157897.1 (uncharacterized protein LOC111024503 [Momordica charantia])

HSP 1 Score: 210.3 bits (534), Expect = 2.0e-50
Identity = 112/160 (70.00%), Postives = 125/160 (78.12%), Query Frame = 0


Query: 81  SRREGDLRK------VKALKARCQKKDNVFDDGEMGESPFTLDILEEPKPAMFKTFAMKP 140
           +R E DL K      V+ALKA+C+KK+  FDDG++GESPFT DILE P P  FKT  MK 
Sbjct: 504 TREEFDLMKHRFDEQVEALKAKCEKKECSFDDGDLGESPFTSDILEVPIPPKFKTPTMKL 563

Query: 141 YDGSKDPKDYVEVFKGFIDFQAGSDAMKCRAFHIALIESTWLWYRRLSTRSISTYSQLRK 200
           YD SKDPKDYVEVF+G +DFQA +DA+KC AF IAL  S  LWYRRL  RSISTYSQLRK
Sbjct: 564 YDRSKDPKDYVEVFEGLMDFQAATDAIKCSAFQIALTGSARLWYRRLPARSISTYSQLRK 623

Query: 201 EFISQFSSRQYDQKTATHLATIRQKEDETLMEYVTKFQVE 235
           EFISQF SR YD+KTATHLATIRQKE ETL EYVT+FQ E
Sbjct: 624 EFISQFFSRHYDRKTATHLATIRQKEGETLREYVTRFQEE 663

[Close]

BLAST of Moc01g12830 vs. ExPASy TrEMBL
Match: A0A6J1DY58 (uncharacterized protein LOC111025663 OS=Momordica charantia OX=3673 GN=LOC111025663 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 3.1e-54
Identity = 111/146 (76.03%), Postives = 124/146 (84.93%), Query Frame = 0


Query: 89  KVKALKARCQKKDNVFDDGEMGESPFTLDILEEPKPAMFKTFAMKPYDGSKDPKDYVEVF 148
           +V+ALKARC+KK+  FDDG++GESPFT DILE P P  FKT  MKPYDGSKDPKDYVEVF
Sbjct: 8   QVEALKARCEKKECSFDDGDLGESPFTSDILEAPIPPKFKTPTMKPYDGSKDPKDYVEVF 67

Query: 149 KGFIDFQAGSDAMKCRAFHIALIESTWLWYRRLSTRSISTYSQLRKEFISQFSSRQYDQK 208
           +G +DFQA +DA+KCRAF IAL +S  LWYRRL  RSISTYSQLRKEFISQFSSR YD+K
Sbjct: 68  EGLMDFQAATDAIKCRAFQIALTDSARLWYRRLPARSISTYSQLRKEFISQFSSRHYDRK 127

Query: 209 TATHLATIRQKEDETLMEYVTKFQVE 235
           TATHLATIRQKE ETL EYVT+F  E
Sbjct: 128 TATHLATIRQKEGETLREYVTRFLEE 153

[Close]

BLAST of Moc01g12830 vs. ExPASy TrEMBL
Match: A0A6J1DDW5 (uncharacterized protein LOC111019634 OS=Momordica charantia OX=3673 GN=LOC111019634 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.1e-51
Identity = 107/146 (73.29%), Postives = 121/146 (82.88%), Query Frame = 0


Query: 89  KVKALKARCQKKDNVFDDGEMGESPFTLDILEEPKPAMFKTFAMKPYDGSKDPKDYVEVF 148
           +V+ALKA+C+KK++ FDDG++GESPFT DILE   P  FKT  MKPYDGSKDPKDYVEVF
Sbjct: 122 QVEALKAKCEKKESSFDDGDLGESPFTSDILEALIPLKFKTPTMKPYDGSKDPKDYVEVF 181

Query: 149 KGFIDFQAGSDAMKCRAFHIALIESTWLWYRRLSTRSISTYSQLRKEFISQFSSRQYDQK 208
           +G +DFQA +DA+KCR F IAL  S  LWYRRL  RSISTYSQLRKEFI QFSSR YD+K
Sbjct: 182 EGLMDFQAATDAIKCRDFQIALTGSARLWYRRLPARSISTYSQLRKEFIIQFSSRHYDRK 241

Query: 209 TATHLATIRQKEDETLMEYVTKFQVE 235
           TATHL TIRQKE ETL EYVT+FQ E
Sbjct: 242 TATHLTTIRQKEGETLREYVTRFQEE 267

[Close]

BLAST of Moc01g12830 vs. ExPASy TrEMBL
Match: A0A6J1DS95 (uncharacterized protein LOC111023421 OS=Momordica charantia OX=3673 GN=LOC111023421 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.1e-51
Identity = 106/159 (66.67%), Postives = 130/159 (81.76%), Query Frame = 0


Query: 77  RADYSRREGDL-RKVKALKARCQKKDNVFDDGEMGESPFTLDILEEPKPAMFKTFAMKPY 136
           R ++ +  G+L  +V+ALKA+C++KD+  +DG++GESPFT D+LE P P  FK   +KPY
Sbjct: 30  REEFDQLRGELDAQVEALKAKCEQKDDSLNDGDLGESPFTSDVLEAPIPPKFKAPTVKPY 89

Query: 137 DGSKDPKDYVEVFKGFIDFQAGSDAMKCRAFHIALIESTWLWYRRLSTRSISTYSQLRKE 196
           DG+KDPKDYVEVF+G +DFQA SDA+KCRAF IAL  S  LWYRRL  RSISTYSQLR+E
Sbjct: 90  DGTKDPKDYVEVFEGLMDFQAASDAIKCRAFQIALTGSARLWYRRLPXRSISTYSQLRRE 149

Query: 197 FISQFSSRQYDQKTATHLATIRQKEDETLMEYVTKFQVE 235
           F++QFSSR YD+KTATHLATIRQKE ETL EYVT+FQ E
Sbjct: 150 FLAQFSSRHYDKKTATHLATIRQKEGETLREYVTRFQEE 188

[Close]

BLAST of Moc01g12830 vs. ExPASy TrEMBL
Match: A0A6J1DPN4 (uncharacterized protein LOC111023060 OS=Momordica charantia OX=3673 GN=LOC111023060 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 3.3e-51
Identity = 105/146 (71.92%), Postives = 120/146 (82.19%), Query Frame = 0


Query: 89  KVKALKARCQKKDNVFDDGEMGESPFTLDILEEPKPAMFKTFAMKPYDGSKDPKDYVEVF 148
           +V+ALK RC+KK++ FDDG++GESPFT DILE   P  FKT  MK YDGSKDPKDYVEVF
Sbjct: 114 QVEALKVRCEKKESAFDDGDLGESPFTSDILEASIPPKFKTPTMKSYDGSKDPKDYVEVF 173

Query: 149 KGFIDFQAGSDAMKCRAFHIALIESTWLWYRRLSTRSISTYSQLRKEFISQFSSRQYDQK 208
           +G +DFQA +DA+KCRAF IAL  S  LWYRRL  RSISTYSQLRKEFISQF SR YD+K
Sbjct: 174 EGLMDFQAATDAIKCRAFQIALTGSARLWYRRLPARSISTYSQLRKEFISQFFSRHYDRK 233

Query: 209 TATHLATIRQKEDETLMEYVTKFQVE 235
           T THLATIRQKE +TL EY+T+FQ E
Sbjct: 234 TTTHLATIRQKEGKTLKEYITRFQEE 259

[Close]

BLAST of Moc01g12830 vs. ExPASy TrEMBL
Match: A0A6J1DM55 (uncharacterized protein LOC111022267 OS=Momordica charantia OX=3673 GN=LOC111022267 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 9.5e-51
Identity = 105/146 (71.92%), Postives = 122/146 (83.56%), Query Frame = 0


Query: 89  KVKALKARCQKKDNVFDDGEMGESPFTLDILEEPKPAMFKTFAMKPYDGSKDPKDYVEVF 148
           +V+ALKA C+KK++ FDDG++GE PFTLDILE P    FKT  MKPYDGSK+PKDYV+VF
Sbjct: 101 QVEALKANCEKKESSFDDGDLGELPFTLDILEAPIHPKFKTPTMKPYDGSKNPKDYVKVF 160

Query: 149 KGFIDFQAGSDAMKCRAFHIALIESTWLWYRRLSTRSISTYSQLRKEFISQFSSRQYDQK 208
           +G ++FQA +DA+KCRAF IA   S  LWYRRL  RSISTYSQLRKEFISQFSSR YD+K
Sbjct: 161 EGLMNFQAATDAIKCRAFQIAFTGSARLWYRRLPARSISTYSQLRKEFISQFSSRYYDRK 220

Query: 209 TATHLATIRQKEDETLMEYVTKFQVE 235
           TATHLATIRQK+ ETL EYVT+FQ E
Sbjct: 221 TATHLATIRQKKGETLREYVTRFQEE 246

The following BLAST results are available for this feature:

BLAST of Moc01g12830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159250.1	6.5e-54	76.03	uncharacterized protein LOC111025663 [Momordica charantia]	[more]
XP_022151719.1	2.3e-51	73.29	uncharacterized protein LOC111019634 [Momordica charantia]	[more]
XP_022156542.1	2.3e-51	66.67	uncharacterized protein LOC111023421 [Momordica charantia]	[more]
XP_022156088.1	6.7e-51	71.92	uncharacterized protein LOC111023060 [Momordica charantia]	[more]
XP_022157897.1	2.0e-50	70.00	uncharacterized protein LOC111024503 [Momordica charantia]	[more]

BLAST of Moc01g12830 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc01g12830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DY58	3.1e-54	76.03	uncharacterized protein LOC111025663 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DDW5	1.1e-51	73.29	uncharacterized protein LOC111019634 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1DS95	1.1e-51	66.67	uncharacterized protein LOC111023421 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DPN4	3.3e-51	71.92	uncharacterized protein LOC111023060 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DM55	9.5e-51	71.92	uncharacterized protein LOC111022267 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of Moc01g12830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 166..232 e-value: 2.0E-9 score: 37.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc01g12830.1	Moc01g12830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane