MS028758 (gene) Bitter gourd (TR) v1

Overview


Name	MS028758
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold155: 582117 .. 582892 (-)
RNA-Seq Expression	MS028758
Synteny	MS028758

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTACCTTAAAGGCGTATCATGCTTCTCAAGGAGACGAAAAAACAGAAGAAGAAATCATGGAGACGGTCCTTGGGAGAAGATCAAACTATATAATAGGAATGGGATATGGACCGAAACCCACCAGAAACAAAGGATCATCATCAAAATACTCTGATGAATATGTGGAGTCATTAGAGGCTCGTCTTCAGAAGCATGAGGAAGAATTGGCAACTCAACGAAAAGCGAACGAAGACCAACAAATTGCCACCCAAGAACAAATACAAAAAGCATTGGAGGCTCAAAGCCAGGAGTTTAACAGGAAACTTCTCGAAATGCAACAAATGTTTCTTTCGGGGCCAGGAAGTTCATCGAATAGTAAGGTATGTCGTGAAATTAGTTTCTTGATGTTATGGTTATGTGCTCAAGTGTTAAAACTTTACGTACGTTTTGAGAGTATATCTTCTAGATTATGTTTGTCTGAAGTATGATATGATTTACGTATGATATTGAGTATGTCTGATTTTCTTTGGAATATATCATACCTTTGGAGTATGTCTAAGTTTATTTGGAACTCTGTTTTGGAATGTTTGGTTGGAGAGTAAAAGATTTTGTGACGTTCGTGACATTGGGGGGGAGGGGGGTGGATAATATTTAATAAGTGTTATAATTTAAATGGTTGATCTCGTGTGATTTTTAGGAGAGGAAGATATGGGTGGGTGTTATGCGTTTATGTGTGTGTATTGAGTACGTATGCTTTTCTTTGGAATATATTTTACCTTTGGAGTATGTCTGA

mRNA sequence

ATGATTACCTTAAAGGCGTATCATGCTTCTCAAGGAGACGAAAAAACAGAAGAAGAAATCATGGAGACGGTCCTTGGGAGAAGATCAAACTATATAATAGGAATGGGATATGGACCGAAACCCACCAGAAACAAAGGATCATCATCAAAATACTCTGATGAATATGTGGAGTCATTAGAGGCTCGTCTTCAGAAGCATGAGGAAGAATTGGCAACTCAACGAAAAGCGAACGAAGACCAACAAATTGCCACCCAAGAACAAATACAAAAAGCATTGGAGGCTCAAAGCCAGGAGTTTAACAGGAAACTTCTCGAAATGCAACAAATGTTTCTTTCGGGGCCAGGAAGTTCATCGAATAGTAAGGAGAGGAAGATATGGGTGGGTGTTATGCGTTTATGTGTGTGTATTGAGTACGTATGCTTTTCTTTGGAATATATTTTACCTTTGGAGTATGTCTGA

Coding sequence (CDS)

ATGATTACCTTAAAGGCGTATCATGCTTCTCAAGGAGACGAAAAAACAGAAGAAGAAATCATGGAGACGGTCCTTGGGAGAAGATCAAACTATATAATAGGAATGGGATATGGACCGAAACCCACCAGAAACAAAGGATCATCATCAAAATACTCTGATGAATATGTGGAGTCATTAGAGGCTCGTCTTCAGAAGCATGAGGAAGAATTGGCAACTCAACGAAAAGCGAACGAAGACCAACAAATTGCCACCCAAGAACAAATACAAAAAGCATTGGAGGCTCAAAGCCAGGAGTTTAACAGGAAACTTCTCGAAATGCAACAAATGTTTCTTTCGGGGCCAGGAAGTTCATCGAATAGTAAGGAGAGGAAGATATGGGTGGGTGTTATGCGTTTATGTGTGTGTATTGAGTACGTATGCTTTTCTTTGGAATATATTTTACCTTTGGAGTATGTCTGA

Protein sequence

MITLKAYHASQGDEKTEEEIMETVLGRRSNYIIGMGYGPKPTRNKGSSSKYSDEYVESLEARLQKHEEELATQRKANEDQQIATQEQIQKALEAQSQEFNRKLLEMQQMFLSGPGSSSNSKERKIWVGVMRLCVCIEYVCFSLEYILPLEYV

Homology

[Close]

BLAST of MS028758 vs. NCBI nr
Match: XP_022148911.1 (uncharacterized protein LOC111017461 [Momordica charantia])

HSP 1 Score: 196.8 bits (499), Expect = 1.3e-46
Identity = 114/144 (79.17%), Postives = 118/144 (81.94%), Query Frame = 0


Query: 1   MITLKAYHASQGDEKTEEEIMETVLGRRSNYIIGMGYGPKPTRNKGSSSKYSDEYVESLE 60
           MITLKAYHASQGDEKTEEEIMETVLG+RSNY+IGMGYGPKPTRNKGSSSKYSDEYVESLE
Sbjct: 112 MITLKAYHASQGDEKTEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSSSKYSDEYVESLE 171

Query: 61  ARLQKHEEELATQRKANEDQQIATQEQIQKALEAQSQEFNRKLLEMQQMFLSGPGSSSNS 120
           ARLQKHEEE+A            TQEQIQKALEAQSQEFNRKLLEMQQMFLSG GSSS S
Sbjct: 172 ARLQKHEEEMAR----------TTQEQIQKALEAQSQEFNRKLLEMQQMFLSGGGSSSTS 231

Query: 121 KE-RKIWVGVMRLC--VCIEYVCF 142
           K  R+I   V  LC  V   YVCF
Sbjct: 232 KVCREISFLVFWLCAQVLNVYVCF 245

[Close]

BLAST of MS028758 vs. NCBI nr
Match: XP_022143616.1 (uncharacterized protein LOC111013476 [Momordica charantia])

HSP 1 Score: 193.4 bits (490), Expect = 1.5e-45
Identity = 104/122 (85.25%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 1   MITLKAYHASQGDEKTEEEIMETVLGRRSNYIIGMGYGPKPTRNKGSSSKYSDEYVESLE 60
           MITLKAYHASQGDEKTEEEIMETVLG+RSNY+IGMGYGPKPTRNKGSSSKYSDEYVESLE
Sbjct: 107 MITLKAYHASQGDEKTEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSSSKYSDEYVESLE 166

Query: 61  ARLQKHEEELATQRKANEDQQIATQEQIQKALEAQSQEFNRKLLEMQQMFLSGPGSSSNS 120
           ARLQKHEEE+A            TQEQIQKALEAQSQEFNRKLLEMQQMFLSG GSSS S
Sbjct: 167 ARLQKHEEEMAR----------TTQEQIQKALEAQSQEFNRKLLEMQQMFLSGGGSSSTS 218

Query: 121 KE 123
           K+
Sbjct: 227 KD 218

[Close]

BLAST of MS028758 vs. NCBI nr
Match: XP_022153681.1 (uncharacterized protein LOC111021138 [Momordica charantia])

HSP 1 Score: 84.3 bits (207), Expect = 9.6e-13
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 1   MITLKAYHASQGDEKTEEEIMETVLGRRSNYIIGMGYGPKP 42
           MITLKA HASQGDEKTEEEIMETVLGRRSNYIIGMGYGPKP
Sbjct: 107 MITLKANHASQGDEKTEEEIMETVLGRRSNYIIGMGYGPKP 147

[Close]

BLAST of MS028758 vs. NCBI nr
Match: KAG5576495.1 (hypothetical protein H5410_056629 [Solanum commersonii])

HSP 1 Score: 55.1 bits (131), Expect = 6.3e-04
Identity = 28/65 (43.08%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 1   MITLKAYHASQGDEKTEEEIMETVLGRRSNYIIGMGYGPKPTRNKGSSSKYSDEYVESLE 60
           MI LKA + S     T +EI++ +LG++S YI G+GYGPKP  N+ ++ + + E  +SLE
Sbjct: 152 MIDLKALYTSGESSMTIDEIVDAILGKKSGYIKGLGYGPKPNTNR-ATQRRTTELEDSLE 211

Query: 61  ARLQK 66
            R +K
Sbjct: 212 RRRRK 215

[Close]

BLAST of MS028758 vs. ExPASy TrEMBL
Match: A0A6J1D6S9 (uncharacterized protein LOC111017461 OS=Momordica charantia OX=3673 GN=LOC111017461 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 6.4e-47
Identity = 114/144 (79.17%), Postives = 118/144 (81.94%), Query Frame = 0


Query: 1   MITLKAYHASQGDEKTEEEIMETVLGRRSNYIIGMGYGPKPTRNKGSSSKYSDEYVESLE 60
           MITLKAYHASQGDEKTEEEIMETVLG+RSNY+IGMGYGPKPTRNKGSSSKYSDEYVESLE
Sbjct: 112 MITLKAYHASQGDEKTEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSSSKYSDEYVESLE 171

Query: 61  ARLQKHEEELATQRKANEDQQIATQEQIQKALEAQSQEFNRKLLEMQQMFLSGPGSSSNS 120
           ARLQKHEEE+A            TQEQIQKALEAQSQEFNRKLLEMQQMFLSG GSSS S
Sbjct: 172 ARLQKHEEEMAR----------TTQEQIQKALEAQSQEFNRKLLEMQQMFLSGGGSSSTS 231

Query: 121 KE-RKIWVGVMRLC--VCIEYVCF 142
           K  R+I   V  LC  V   YVCF
Sbjct: 232 KVCREISFLVFWLCAQVLNVYVCF 245

[Close]

BLAST of MS028758 vs. ExPASy TrEMBL
Match: A0A6J1CQT5 (uncharacterized protein LOC111013476 OS=Momordica charantia OX=3673 GN=LOC111013476 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 7.1e-46
Identity = 104/122 (85.25%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 1   MITLKAYHASQGDEKTEEEIMETVLGRRSNYIIGMGYGPKPTRNKGSSSKYSDEYVESLE 60
           MITLKAYHASQGDEKTEEEIMETVLG+RSNY+IGMGYGPKPTRNKGSSSKYSDEYVESLE
Sbjct: 107 MITLKAYHASQGDEKTEEEIMETVLGKRSNYVIGMGYGPKPTRNKGSSSKYSDEYVESLE 166

Query: 61  ARLQKHEEELATQRKANEDQQIATQEQIQKALEAQSQEFNRKLLEMQQMFLSGPGSSSNS 120
           ARLQKHEEE+A            TQEQIQKALEAQSQEFNRKLLEMQQMFLSG GSSS S
Sbjct: 167 ARLQKHEEEMAR----------TTQEQIQKALEAQSQEFNRKLLEMQQMFLSGGGSSSTS 218

Query: 121 KE 123
           K+
Sbjct: 227 KD 218

[Close]

BLAST of MS028758 vs. ExPASy TrEMBL
Match: A0A6J1DLF1 (uncharacterized protein LOC111021138 OS=Momordica charantia OX=3673 GN=LOC111021138 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.7e-13
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 1   MITLKAYHASQGDEKTEEEIMETVLGRRSNYIIGMGYGPKP 42
           MITLKA HASQGDEKTEEEIMETVLGRRSNYIIGMGYGPKP
Sbjct: 107 MITLKANHASQGDEKTEEEIMETVLGRRSNYIIGMGYGPKP 147

The following BLAST results are available for this feature:

BLAST of MS028758 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148911.1	1.3e-46	79.17	uncharacterized protein LOC111017461 [Momordica charantia]	[more]
XP_022143616.1	1.5e-45	85.25	uncharacterized protein LOC111013476 [Momordica charantia]	[more]
XP_022153681.1	9.6e-13	97.56	uncharacterized protein LOC111021138 [Momordica charantia]	[more]
KAG5576495.1	6.3e-04	43.08	hypothetical protein H5410_056629 [Solanum commersonii]	[more]

BLAST of MS028758 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS028758 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D6S9	6.4e-47	79.17	uncharacterized protein LOC111017461 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1CQT5	7.1e-46	85.25	uncharacterized protein LOC111013476 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DLF1	4.7e-13	97.56	uncharacterized protein LOC111021138 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]

BLAST of MS028758 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 56..83
None	No IPR available	COILS	Coil	Coil	coord: 89..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS028758.1	MS028758.1	mRNA