MS028741 (gene) Bitter gourd (TR) v1

Overview


Name	MS028741
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Plus3 domain-containing protein
Location	scaffold155: 138040 .. 139608 (-)
RNA-Seq Expression	MS028741
Synteny	MS028741

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGCATTTTTTGTCAGCCACAAACTTGGCCCCATCTCAGCTTGTCCCTAACGGACAGGCTACCTTGCTGGGTTTATACTACACCTGGTGGGGCTTCAGTGCAGGTGAGGCTGACCTGCTGCTAGATGTGGGCCAAATTTTAGCGACTCACCTGATAAAGTCTTACATGGAGTTTCCGGGTCTGTACTATATATCGACTCGGAACACCTTCGCCGAAGTCATCCATACTCCTTCAACTAACAAATTTTGGAGGGATAAATGGTTCCTCGTCTCGGGGGGTTGGCTGGCCACCGTGAATGGGGAGCCATGCTGCCAAGTCCCAACCGAATTTGGGGAAGTAGGTAAGTCCTTAGTGGTCGGTCTTTCTTAAGGCTCAACTCACCATGGAATATCTAACGGTCCTCTTTTCTTTTGCAGCACTCTCGCGCCTCCACCTCGGATCAGCGGATATTATTTGGAAGTCAAAGAGATGGTGCGAAAATTAGACAAACTCTAGTACGAGGACATCTTAGACGACATCAACCTCCATCAATGCAGGCTAGCTCAGCTTGACCACCAACGTACAGAGAGACTAGACACCATGGTTTTGAAACTATACACCTCCATGAATCGGCAATGTCTAGGAGACCAATCAATGCCTTGCGAGACATCTCAAAAGCATGGGAGATCAGGCACAGCTCCACGTGGGTCTGAGGGACCGTCTCGCCCTCTCCGAGCTGACCACCTGCAGACTGTGCTGGCCTTTCCCTCATCATAGGGAAAGAGTCAATCCTCAACCGACTCGAAGGGAAAGCGATCGGATAGGGCCTCATCCCGATCTCCTCCAAAACCAATTAGCATCCACTCCCAAGATGATGCTCAGCCTCGGACCCTGCCAAATAAGGACTTCTCATACCCTTTCAAGTCAAGTTTTGCTGGGGAGTCTGTGCGCGAGGCTGCTGTGAAGGCTTACAAGACAAGCTCGTCTCGAATGCTTCAGAAGAACGAGAATGTCTTCTGGGGACTACCTCCTATGTCTGATAGATTAGATGGATCGACTTCACTTCATGGTCTGCCATGCTGTGGCGTTCGTCAGTCAATAGCTAACAGCTCGCAAGGTTAGCTTCATTCGAGAACGTGAGGCCACTAAACAGACCTAGGAGCTGAAGGCCGAGTTGGCTAAGGCTTGGACAGGATTGAGGAATTGACTTGATCAACCTCCGCTCTGGAAAACTTCATTAGTCAGGCTAGGATAGACATCAAAACGGCTGAGACGAGGGCTAAAGAGGCGAAGGAGCAAGCTGAGAAGGAGGCTACGGAGCGAGCTGCTGAAAGGTTGATTATGAGACCAAAATAAAAAATTTTGATGTCCTTGAATCCGCCATGAAGGAGCTCCCATAATTCGACGACCTGGTGCGGGACCTGGTTGACAAAAGGTTCGACATCACCGTCGCTGAGGTGAAAAAAGCTTGCCCCCAATCTGGACCTCGCCCTAGCATATCAGGCATTCGAGGCCTCCATGGAGGAGGACGAGGGCAAAGCTTCAGTTAAAGAGGTCGATGGTGTCCGTGTGACCAGCAGGGGCTGA

mRNA sequence

ATGCAGCATTTTTTGTCAGCCACAAACTTGGCCCCATCTCAGCTTGTCCCTAACGGACAGGCTACCTTGCTGGGTTTATACTACACCTGGTGGGGCTTCAGTGCAGGTGAGGCTGACCTGCTGCTAGATGTGGGCCAAATTTTAGCGACTCACCTGATAAAGTCTTACATGGAGTTTCCGGGTCTGTACTATATATCGACTCGGAACACCTTCGCCGAAGTCATCCATACTCCTTCAACTAACAAATTTTGGAGGGATAAATGGTTCCTCGTCTCGGGGGGTTGGCTGGCCACCGTGAATGGGGAGCCATGCTGCCAAGTCCCAACCGAATTTGGGGAAGGAAAGAGTCAATCCTCAACCGACTCGAAGGGAAAGCGATCGGATAGGGCCTCATCCCGATCTCCTCCAAAACCAATTAGCATCCACTCCCAAGATGATGCTCAGCCTCGGACCCTGCCAAATAAGGACTTCTCATACCCTTTCAAGTCAAGTTTTGCTGGGGAGTCTGTGCGCGAGGCTGCTGTGAAGGCTTACAAGACAAGCTCGTCTCGAATGCTTCAGAAGAACGAGAATGTCTTCTGGGGACTACCTCCTATGTCTGATAGATTAGATGGATCGACTTCACTTCATGGTCTGCCATGCTGTGGCGTTCGTCAGTCAATAGCTAACAGCTCGCAAGCATATCAGGCATTCGAGGCCTCCATGGAGGAGGACGAGGGCAAAGCTTCAGTTAAAGAGGTCGATGGTGTCCGTGTGACCAGCAGGGGCTGA

Coding sequence (CDS)

ATGCAGCATTTTTTGTCAGCCACAAACTTGGCCCCATCTCAGCTTGTCCCTAACGGACAGGCTACCTTGCTGGGTTTATACTACACCTGGTGGGGCTTCAGTGCAGGTGAGGCTGACCTGCTGCTAGATGTGGGCCAAATTTTAGCGACTCACCTGATAAAGTCTTACATGGAGTTTCCGGGTCTGTACTATATATCGACTCGGAACACCTTCGCCGAAGTCATCCATACTCCTTCAACTAACAAATTTTGGAGGGATAAATGGTTCCTCGTCTCGGGGGGTTGGCTGGCCACCGTGAATGGGGAGCCATGCTGCCAAGTCCCAACCGAATTTGGGGAAGGAAAGAGTCAATCCTCAACCGACTCGAAGGGAAAGCGATCGGATAGGGCCTCATCCCGATCTCCTCCAAAACCAATTAGCATCCACTCCCAAGATGATGCTCAGCCTCGGACCCTGCCAAATAAGGACTTCTCATACCCTTTCAAGTCAAGTTTTGCTGGGGAGTCTGTGCGCGAGGCTGCTGTGAAGGCTTACAAGACAAGCTCGTCTCGAATGCTTCAGAAGAACGAGAATGTCTTCTGGGGACTACCTCCTATGTCTGATAGATTAGATGGATCGACTTCACTTCATGGTCTGCCATGCTGTGGCGTTCGTCAGTCAATAGCTAACAGCTCGCAAGCATATCAGGCATTCGAGGCCTCCATGGAGGAGGACGAGGGCAAAGCTTCAGTTAAAGAGGTCGATGGTGTCCGTGTGACCAGCAGGGGCTGA

Protein sequence

MQHFLSATNLAPSQLVPNGQATLLGLYYTWWGFSAGEADLLLDVGQILATHLIKSYMEFPGLYYISTRNTFAEVIHTPSTNKFWRDKWFLVSGGWLATVNGEPCCQVPTEFGEGKSQSSTDSKGKRSDRASSRSPPKPISIHSQDDAQPRTLPNKDFSYPFKSSFAGESVREAAVKAYKTSSSRMLQKNENVFWGLPPMSDRLDGSTSLHGLPCCGVRQSIANSSQAYQAFEASMEEDEGKASVKEVDGVRVTSRG

Homology

[Close]

BLAST of MS028741 vs. NCBI nr
Match: TXG53679.1 (hypothetical protein EZV62_018935 [Acer yangbiense])

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-05
Identity = 38/113 (33.63%), Postives = 55/113 (48.67%), Query Frame = 0


Query: 1   MQHFLSATNLAPSQLVPNGQATLLGLYYTWWGFSAGEADLLLDVGQILATHLIKSYMEFP 60
           +++ LS    AP+QL PN    L+G Y  W      E    L   +    + +K + +  
Sbjct: 418 LRYMLSHLQCAPAQLSPNAWRALIGTYIIWKQCQFPE----LTFREFQQLYQLKIHPKSH 477

Query: 61  GLYYIST-RNTFAEVIHTPSTNKFWRDKWFLVSGGWLATVNGEPC-CQVPTEF 112
           G Y +ST     A VI +PS+NK W+ KWF  SG W A  N +    ++PT F
Sbjct: 478 GWYCLSTWPGKEAMVIDSPSSNKNWKKKWFFASGHWEADPNEQDLEHRIPTAF 526

[Close]

BLAST of MS028741 vs. NCBI nr
Match: TXG53676.1 (hypothetical protein EZV62_018932 [Acer yangbiense])

HSP 1 Score: 57.4 bits (137), Expect = 2.1e-04
Identity = 42/145 (28.97%), Postives = 65/145 (44.83%), Query Frame = 0


Query: 1   MQHFLSATNLAPSQLVPNGQATLLGLYYTWWGFSAGEADLLLDVGQILATHLIKSYMEFP 60
           +++ L   N AP+QL PN    L+G Y  W      E    L   + +  + +KS   + 
Sbjct: 416 LRYMLRRLNCAPAQLGPNVWRALIGTYIIWKQCQLPE----LTFREFMNLYQLKSIPNYH 475

Query: 61  GLYYIST-RNTFAEVIHTPSTNKFWRDKWFLVSGGWLATVNGEPC-CQVPTEFGE----- 120
           G YY+S        V   PS+NK W++KWF  SG W A  + +    ++PT F       
Sbjct: 476 GWYYVSAWPGKEVMVTDNPSSNKDWKNKWFFASGHWGAQPSEQVFEHRIPTRFSNQVGAA 535

Query: 121 -GKSQSSTDSKGKRSDRASSRSPPK 138
             K +     + KR+ + +S  P K
Sbjct: 536 YWKKKPMVTEEQKRNIKIASAIPQK 556

[Close]

BLAST of MS028741 vs. ExPASy TrEMBL
Match: A0A5C7HA73 (Plus3 domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_018935 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.1e-06
Identity = 38/113 (33.63%), Postives = 55/113 (48.67%), Query Frame = 0


Query: 1   MQHFLSATNLAPSQLVPNGQATLLGLYYTWWGFSAGEADLLLDVGQILATHLIKSYMEFP 60
           +++ LS    AP+QL PN    L+G Y  W      E    L   +    + +K + +  
Sbjct: 418 LRYMLSHLQCAPAQLSPNAWRALIGTYIIWKQCQFPE----LTFREFQQLYQLKIHPKSH 477

Query: 61  GLYYIST-RNTFAEVIHTPSTNKFWRDKWFLVSGGWLATVNGEPC-CQVPTEF 112
           G Y +ST     A VI +PS+NK W+ KWF  SG W A  N +    ++PT F
Sbjct: 478 GWYCLSTWPGKEAMVIDSPSSNKNWKKKWFFASGHWEADPNEQDLEHRIPTAF 526

[Close]

BLAST of MS028741 vs. ExPASy TrEMBL
Match: A0A5C7HBX5 (Plus3 domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_018932 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.0e-04
Identity = 42/145 (28.97%), Postives = 65/145 (44.83%), Query Frame = 0


Query: 1   MQHFLSATNLAPSQLVPNGQATLLGLYYTWWGFSAGEADLLLDVGQILATHLIKSYMEFP 60
           +++ L   N AP+QL PN    L+G Y  W      E    L   + +  + +KS   + 
Sbjct: 416 LRYMLRRLNCAPAQLGPNVWRALIGTYIIWKQCQLPE----LTFREFMNLYQLKSIPNYH 475

Query: 61  GLYYIST-RNTFAEVIHTPSTNKFWRDKWFLVSGGWLATVNGEPC-CQVPTEFGE----- 120
           G YY+S        V   PS+NK W++KWF  SG W A  + +    ++PT F       
Sbjct: 476 GWYYVSAWPGKEVMVTDNPSSNKDWKNKWFFASGHWGAQPSEQVFEHRIPTRFSNQVGAA 535

Query: 121 -GKSQSSTDSKGKRSDRASSRSPPK 138
             K +     + KR+ + +S  P K
Sbjct: 536 YWKKKPMVTEEQKRNIKIASAIPQK 556

[Close]

BLAST of MS028741 vs. ExPASy TrEMBL
Match: A0A2N9IDF4 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49122 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.3e-04
Identity = 31/94 (32.98%), Postives = 48/94 (51.06%), Query Frame = 0


Query: 1   MQHFLSATNLAPSQLVPNGQATLLGLYYTWWGFSAGEADLLLDVGQILATHLIKSYMEFP 60
           M+  L   NLAP QL PN   T++G    W   S G+ DL LD  ++L  +        P
Sbjct: 231 MRELLDRLNLAPGQLAPNAWRTVVGSMVMWKVLSEGKDDLTLD--ELLFCYKPCQIPASP 290

Query: 61  GLYYISTRNTFAE-VIHTPSTNKFWRDKWFLVSG 94
           G + ++ R    + ++ TPS+N+ W+D +  V G
Sbjct: 291 GFWSLNMRQRGLKLIVGTPSSNREWKDNYVFVCG 322

[Close]

BLAST of MS028741 vs. ExPASy TrEMBL
Match: A0A2N9GI35 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27077 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.3e-04
Identity = 31/94 (32.98%), Postives = 48/94 (51.06%), Query Frame = 0


Query: 1   MQHFLSATNLAPSQLVPNGQATLLGLYYTWWGFSAGEADLLLDVGQILATHLIKSYMEFP 60
           M+  L   NLAP QL PN   T++G    W   S G+ DL LD  ++L  +        P
Sbjct: 115 MRELLDRLNLAPGQLAPNAWRTVVGSMVMWKVLSEGKDDLTLD--ELLFCYKPCQIPASP 174

Query: 61  GLYYISTRNTFAE-VIHTPSTNKFWRDKWFLVSG 94
           G + ++ R    + ++ TPS+N+ W+D +  V G
Sbjct: 175 GFWSLNMRQRGLKLIVGTPSSNREWKDNYVFVCG 206

[Close]

BLAST of MS028741 vs. ExPASy TrEMBL
Match: A0A2N9GN06 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28652 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.3e-04
Identity = 31/94 (32.98%), Postives = 48/94 (51.06%), Query Frame = 0


Query: 1   MQHFLSATNLAPSQLVPNGQATLLGLYYTWWGFSAGEADLLLDVGQILATHLIKSYMEFP 60
           M+  L   NLAP QL PN   T++G    W   S G+ DL LD  ++L  +        P
Sbjct: 272 MRELLDRLNLAPGQLAPNAWRTVVGSMVMWKVLSEGKDDLTLD--ELLFCYKPCQIPASP 331

Query: 61  GLYYISTRNTFAE-VIHTPSTNKFWRDKWFLVSG 94
           G + ++ R    + ++ TPS+N+ W+D +  V G
Sbjct: 332 GFWSLNMRQRGLKLIVGTPSSNREWKDNYVFVCG 363

The following BLAST results are available for this feature:

BLAST of MS028741 vs. NCBI nr


Match Name	E-value	Identity	Description
TXG53679.1	1.5e-05	33.63	hypothetical protein EZV62_018935 [Acer yangbiense]	[more]
TXG53676.1	2.1e-04	28.97	hypothetical protein EZV62_018932 [Acer yangbiense]	[more]

BLAST of MS028741 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS028741 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5C7HA73	7.1e-06	33.63	Plus3 domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_018935 PE...	[more]
A0A5C7HBX5	1.0e-04	28.97	Plus3 domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_018932 PE...	[more]
A0A2N9IDF4	2.3e-04	32.98	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49122 PE=4 SV=1	[more]
A0A2N9GI35	2.3e-04	32.98	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27077 PE=4 SV=1	[more]
A0A2N9GN06	2.3e-04	32.98	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28652 PE=4 SV=1	[more]

BLAST of MS028741 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 234..256
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS028741.1	MS028741.1	mRNA