MS028626 (gene) Bitter gourd (TR) v1

Overview


Name	MS028626
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Polyprotein
Location	scaffold101: 24393 .. 24659 (-)
RNA-Seq Expression	MS028626
Synteny	MS028626

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACACGGAAATGAAGAGTCATTATCCTCAACCATCCCCTCCTGACCTAGGATGGGACGATCTCCGCCATGATCAACGTGCTTATGACGAATCGTCAATAGTTACTTGGAATATCGACGGATATTCTGAAGCTCAAATGATGAATGCTTTTCAAGAAATGATGATGGCAGCTACAGCATTCAGCACCAAAAAGTCGGTTTTACAGACCGCCCATATCTTAATCTCTGGTTTCTCTGGAAACCTAAGGAGCTGGTGGCATAACTAG

mRNA sequence

ATGCACACGGAAATGAAGAGTCATTATCCTCAACCATCCCCTCCTGACCTAGGATGGGACGATCTCCGCCATGATCAACGTGCTTATGACGAATCGTCAATAGTTACTTGGAATATCGACGGATATTCTGAAGCTCAAATGATGAATGCTTTTCAAGAAATGATGATGGCAGCTACAGCATTCAGCACCAAAAAGTCGGTTTTACAGACCGCCCATATCTTAATCTCTGGTTTCTCTGGAAACCTAAGGAGCTGGTGGCATAACTAG

Coding sequence (CDS)

ATGCACACGGAAATGAAGAGTCATTATCCTCAACCATCCCCTCCTGACCTAGGATGGGACGATCTCCGCCATGATCAACGTGCTTATGACGAATCGTCAATAGTTACTTGGAATATCGACGGATATTCTGAAGCTCAAATGATGAATGCTTTTCAAGAAATGATGATGGCAGCTACAGCATTCAGCACCAAAAAGTCGGTTTTACAGACCGCCCATATCTTAATCTCTGGTTTCTCTGGAAACCTAAGGAGCTGGTGGCATAACTAG

Protein sequence

MHTEMKSHYPQPSPPDLGWDDLRHDQRAYDESSIVTWNIDGYSEAQMMNAFQEMMMAATAFSTKKSVLQTAHILISGFSGNLRSWWHN

Homology

[Close]

BLAST of MS028626 vs. NCBI nr
Match: XP_022151716.1 (uncharacterized protein LOC111019629 [Momordica charantia])

HSP 1 Score: 169.5 bits (428), Expect = 1.3e-38
Identity = 77/88 (87.50%), Postives = 82/88 (93.18%), Query Frame = 0


Query: 1   MHTEMKSHYPQPSPPDLGWDDLRHDQRAYDESSIVTWNIDGYSEAQMMNAFQEMMMAATA 60
           MHTE+K+HYP+PSPPD+GWDDLRHDQR YDESSI+TWNIDGYSEAQMMN FQEMMMAATA
Sbjct: 134 MHTEVKNHYPRPSPPDMGWDDLRHDQRTYDESSIITWNIDGYSEAQMMNTFQEMMMAATA 193

Query: 61  FSTKKSVLQTAHILISGFSGNLRSWWHN 89
           FSTKK VLQTA ILIS  SGNLRSWWHN
Sbjct: 194 FSTKKPVLQTAQILISSLSGNLRSWWHN 221

[Close]

BLAST of MS028626 vs. NCBI nr
Match: TYJ98087.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 1.1e-32
Identity = 65/85 (76.47%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 4   EMKSHYPQPSPPDLGWDDLRHDQRAYDESSIVTWNIDGYSEAQMMNAFQEMMMAATAFST 63
           +MK+HYPQPSPPDLGWDDL H++R YD  S++TWNIDGYSEAQMMN FQEM++AATA+ST
Sbjct: 615 DMKNHYPQPSPPDLGWDDLHHEKRTYDGQSLITWNIDGYSEAQMMNTFQEMLLAATAYST 674

Query: 64  KKSVLQTAHILISGFSGNLRSWWHN 89
           KKS  +TA ILI GF+GNLRSWWHN
Sbjct: 675 KKSTYETAQILILGFNGNLRSWWHN 699

[Close]

BLAST of MS028626 vs. NCBI nr
Match: TYJ97599.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 1.1e-32
Identity = 65/85 (76.47%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 4   EMKSHYPQPSPPDLGWDDLRHDQRAYDESSIVTWNIDGYSEAQMMNAFQEMMMAATAFST 63
           +MK+HYPQPSPPDLGWDDL H++R YD  S++TWNIDGYSEAQMMN FQEM++AATA+ST
Sbjct: 616 DMKNHYPQPSPPDLGWDDLHHEKRTYDGQSLITWNIDGYSEAQMMNTFQEMLLAATAYST 675

Query: 64  KKSVLQTAHILISGFSGNLRSWWHN 89
           KKS  +TA ILI GF+GNLRSWWHN
Sbjct: 676 KKSTYETAQILILGFNGNLRSWWHN 700

[Close]

BLAST of MS028626 vs. NCBI nr
Match: KAA0056776.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 1.1e-32
Identity = 65/85 (76.47%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 4   EMKSHYPQPSPPDLGWDDLRHDQRAYDESSIVTWNIDGYSEAQMMNAFQEMMMAATAFST 63
           +MK+HYPQPSPPDLGWDDL H++R YD  S++TWNIDGYSEAQMMN FQEM++AATA+ST
Sbjct: 616 DMKNHYPQPSPPDLGWDDLHHEKRTYDGQSLITWNIDGYSEAQMMNTFQEMLLAATAYST 675

Query: 64  KKSVLQTAHILISGFSGNLRSWWHN 89
           KKS  +TA ILI GF+GNLRSWWHN
Sbjct: 676 KKSTYETAQILILGFNGNLRSWWHN 700

[Close]

BLAST of MS028626 vs. NCBI nr
Match: KAA0052109.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 1.1e-32
Identity = 65/85 (76.47%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 4   EMKSHYPQPSPPDLGWDDLRHDQRAYDESSIVTWNIDGYSEAQMMNAFQEMMMAATAFST 63
           +MK+HYPQPSPPDLGWDDL H++R YD  S++TWNIDGYSEAQMMN FQEM++AATA+ST
Sbjct: 615 DMKNHYPQPSPPDLGWDDLHHEKRTYDGQSLITWNIDGYSEAQMMNTFQEMLLAATAYST 674

Query: 64  KKSVLQTAHILISGFSGNLRSWWHN 89
           KKS  +TA ILI GF+GNLRSWWHN
Sbjct: 675 KKSTYETAQILILGFNGNLRSWWHN 699

[Close]

BLAST of MS028626 vs. ExPASy TrEMBL
Match: A0A6J1DFI7 (uncharacterized protein LOC111019629 OS=Momordica charantia OX=3673 GN=LOC111019629 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 6.4e-39
Identity = 77/88 (87.50%), Postives = 82/88 (93.18%), Query Frame = 0


Query: 1   MHTEMKSHYPQPSPPDLGWDDLRHDQRAYDESSIVTWNIDGYSEAQMMNAFQEMMMAATA 60
           MHTE+K+HYP+PSPPD+GWDDLRHDQR YDESSI+TWNIDGYSEAQMMN FQEMMMAATA
Sbjct: 134 MHTEVKNHYPRPSPPDMGWDDLRHDQRTYDESSIITWNIDGYSEAQMMNTFQEMMMAATA 193

Query: 61  FSTKKSVLQTAHILISGFSGNLRSWWHN 89
           FSTKK VLQTA ILIS  SGNLRSWWHN
Sbjct: 194 FSTKKPVLQTAQILISSLSGNLRSWWHN 221

[Close]

BLAST of MS028626 vs. ExPASy TrEMBL
Match: A0A5D3DC89 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00560 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.2e-33
Identity = 65/85 (76.47%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 4   EMKSHYPQPSPPDLGWDDLRHDQRAYDESSIVTWNIDGYSEAQMMNAFQEMMMAATAFST 63
           +MK+HYPQPSPPDLGWDDL H++R YD  S++TWNIDGYSEAQMMN FQEM++AATA+ST
Sbjct: 307 DMKNHYPQPSPPDLGWDDLHHEKRTYDGQSLITWNIDGYSEAQMMNTFQEMLLAATAYST 366

Query: 64  KKSVLQTAHILISGFSGNLRSWWHN 89
           KKS  +TA ILI GF+GNLRSWWHN
Sbjct: 367 KKSTYETAQILILGFNGNLRSWWHN 391

[Close]

BLAST of MS028626 vs. ExPASy TrEMBL
Match: A0A5D3BG41 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold565G00200 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.2e-33
Identity = 65/85 (76.47%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 4   EMKSHYPQPSPPDLGWDDLRHDQRAYDESSIVTWNIDGYSEAQMMNAFQEMMMAATAFST 63
           +MK+HYPQPSPPDLGWDDL H++R YD  S++TWNIDGYSEAQMMN FQEM++AATA+ST
Sbjct: 615 DMKNHYPQPSPPDLGWDDLHHEKRTYDGQSLITWNIDGYSEAQMMNTFQEMLLAATAYST 674

Query: 64  KKSVLQTAHILISGFSGNLRSWWHN 89
           KKS  +TA ILI GF+GNLRSWWHN
Sbjct: 675 KKSTYETAQILILGFNGNLRSWWHN 699

[Close]

BLAST of MS028626 vs. ExPASy TrEMBL
Match: A0A5D3BEY3 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold690G00300 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.2e-33
Identity = 65/85 (76.47%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 4   EMKSHYPQPSPPDLGWDDLRHDQRAYDESSIVTWNIDGYSEAQMMNAFQEMMMAATAFST 63
           +MK+HYPQPSPPDLGWDDL H++R YD  S++TWNIDGYSEAQMMN FQEM++AATA+ST
Sbjct: 616 DMKNHYPQPSPPDLGWDDLHHEKRTYDGQSLITWNIDGYSEAQMMNTFQEMLLAATAYST 675

Query: 64  KKSVLQTAHILISGFSGNLRSWWHN 89
           KKS  +TA ILI GF+GNLRSWWHN
Sbjct: 676 KKSTYETAQILILGFNGNLRSWWHN 700

[Close]

BLAST of MS028626 vs. ExPASy TrEMBL
Match: A0A5A7UR29 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold486G00660 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.2e-33
Identity = 65/85 (76.47%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 4   EMKSHYPQPSPPDLGWDDLRHDQRAYDESSIVTWNIDGYSEAQMMNAFQEMMMAATAFST 63
           +MK+HYPQPSPPDLGWDDL H++R YD  S++TWNIDGYSEAQMMN FQEM++AATA+ST
Sbjct: 616 DMKNHYPQPSPPDLGWDDLHHEKRTYDGQSLITWNIDGYSEAQMMNTFQEMLLAATAYST 675

Query: 64  KKSVLQTAHILISGFSGNLRSWWHN 89
           KKS  +TA ILI GF+GNLRSWWHN
Sbjct: 676 KKSTYETAQILILGFNGNLRSWWHN 700

The following BLAST results are available for this feature:

BLAST of MS028626 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151716.1	1.3e-38	87.50	uncharacterized protein LOC111019629 [Momordica charantia]	[more]
TYJ98087.1	1.1e-32	76.47	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]
TYJ97599.1	1.1e-32	76.47	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]
KAA0056776.1	1.1e-32	76.47	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]
KAA0052109.1	1.1e-32	76.47	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of MS028626 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS028626 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DFI7	6.4e-39	87.50	uncharacterized protein LOC111019629 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A5D3DC89	5.2e-33	76.47	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BG41	5.2e-33	76.47	Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold56...	[more]
A0A5D3BEY3	5.2e-33	76.47	Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold69...	[more]
A0A5A7UR29	5.2e-33	76.47	Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold48...	[more]

BLAST of MS028626 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS028626.1	MS028626.1	mRNA