MS028555 (gene) Bitter gourd (TR) v1

Overview


Name	MS028555
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	NADH-ubiquinone oxidoreductase chain 5
Location	scaffold29: 352000 .. 353732 (+)
RNA-Seq Expression	MS028555
Synteny	MS028555

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGNAGTCCTCAACCGAATTTGCTCCATTTTGCTCAGTTGAGGGAGCGGAGGTACGCTCGAGCGGTGGCTGGGCAGTGATCTTTGTGGTAGCGGGGGTCGAACTCGGAAGGCTGGCCGGGGTTGTGTTCTTCCGAGCGGACGAGGTCGGCTCGGTGACCGNCAAGTTGAGTCGACTGTGATTCTTCTTGTTCCGCTGTGAATGGTCTCGTTATCGTATTCAGTCGTTTTCCCGGCTTCCGTACCTTCTTCTTAGTCTTCGGCTTTCACTGGATTCACTACTCTAAGTGAAGGAACCCGAGAGGAAGAATCCGATCTTTGAAGGGGAAGAAAATCAGCGATGCCATTTAGCTGTTGGAGTACGGGCATTAGGAGATTAGGACTCAGGGCATGGCATTAGAAGATTAGGGAAATGCTCTTTTGAACGAATCCTAAGAACAATTGGAATGCTTTCAATGGCCAGAAGGGAAGAAAGGATCCCCGGTTATATGATTGTTGGTTAGGAGTTTCATTGTTAGCAAGATCCCCAGCTATTGAATCTGTTGTCGACTTTGCCAGGTTCTAGGGGTTCCCCTTCTTCTTCTTTCGAAATGGGAAGAATAGCGTAGTCAAAGTAGGCCAAGTCGGTAGCCTTTTCTTCCACTCTTGGGAGAAGGGCATGAATATGACTAAATAGTTGGCGCCTTAGCTAGGCCCTTTTCTTGCAGTCACCGATCTTCGACCAATCAGTAAAGGGGTGCCTTAGGGTTGATTCCACCAGTGTCTGTTTAGGGTGAGGCGGTCTCGAGTACCCATTCCATTAAAGGTCGTTCGAGCGCATGGGTGACTTCAGCGACAGGTTGAGAGATATCAATAATTGAACAAGCAGGTCGTACCAGATGTCAAATTCAACTAAACTACACAACAATGGGGCGGCCAAGAACAACTACGGTAGAGCGGTTTATGTATGAATGTCTCCCGGTGGACTTTCTTCTTTCTTTTACAAAAGATGAAGATTATTATCTCTCTCGTTGGAGAAGTTCTTTGTGCCAAAGCCATTTATAAGCCCTCAAGTAGGTAACCCCGAAAGAGGGAAGAGATTTTCGAGTACGNGTGAACAAAGACCCCGGTTGAATATTTTTGTTACTGATCGAACAAATAGATAGGCATAAGATTGAGAAGTGCTTCCCCCGCGTTCTCGTTCACTATATCGAACAAGGTCGGAGGGTTTAGAACATAGAAGCTTGGGTGGCCAAATCACTAATAGATCTCTCAACGAGAGCCTCATTCGATCTCGAGGAAATTGCTTCGGTGGATCCAGTTGATTAAGTCGTTATGTCCGTCGATACCCACTTGCTTGGAGTGCGGGTAAGGGCTCACCTGTTGATTGTGTTGTTGCATGCTTTTTGGTAGAGCCGCCACCTCCCACGGCTACAGCCAGCACCAGGATGGTGCCTATATATATATAAAGGTATAGGCACCAGTTCATTCAGTCAATGAAGCTGCAGTCGGTTCTGATGATTATGCCGTTGATTCGGTAGATGAGTCAGTCGGTTCGGAAGTTGGTTCAGCGATATCTGTCGTCGATGGGGTAGAGGGTCTGCAGATACTCGTCGAGCTCCTCATTGCCCCAATCTTCCCTGTAGGCTCCCTGCTCCGCCAGCGCGACAACTGTCAAAATCATTTGACGCTTCTTCTCACTGAGCAGCCCCTCGACTTACACTTCAGGTTTGGGGAGCTCCGGCAGGGGGNTTGA

mRNA sequence

ATGNAGTCCTCAACCGAATTTGCTCCATTTTGCTCAGTTGAGGGAGCGGAGGTACGCTCGAGCGGTGGCTGGGCAGTGATCTTTGTGGTAGCGGGGGTCGAACTCGGAAGGCTGGCCGGGGTTGTGTTCTTCCGAGCGGACGAGGTCGGCTCGGTGACCGNCAAAGCCGCCACCTCCCACGGCTACAGCCAGCACCAGGATGATGAGTCAGTCGGTTCGGAAGTTGGTTCAGCGATATCTGTCGTCGATGGGGTAGAGGGTCTGCAGATACTCGTCGAGCTCCTCATTGCCCCAATCTTCCCTGTAGGCTCCCTGCTCCGCCAGCGCGACAACTGTCAAAATCATTTGACGCTTCTTCTCACTGAGCAGCCCCTCGACTTACACTTCAGGTTTGGGGAGCTCCGGCAGGGGGNTTGA

Coding sequence (CDS)

ATGNAGTCCTCAACCGAATTTGCTCCATTTTGCTCAGTTGAGGGAGCGGAGGTACGCTCGAGCGGTGGCTGGGCAGTGATCTTTGTGGTAGCGGGGGTCGAACTCGGAAGGCTGGCCGGGGTTGTGTTCTTCCGAGCGGACGAGGTCGGCTCGGTGACCGNCAAAGCCGCCACCTCCCACGGCTACAGCCAGCACCAGGATGATGAGTCAGTCGGTTCGGAAGTTGGTTCAGCGATATCTGTCGTCGATGGGGTAGAGGGTCTGCAGATACTCGTCGAGCTCCTCATTGCCCCAATCTTCCCTGTAGGCTCCCTGCTCCGCCAGCGCGACAACTGTCAAAATCATTTGACGCTTCTTCTCACTGAGCAGCCCCTCGACTTACACTTCAGGTTTGGGGAGCTCCGGCAGGGGGNTTGA

Protein sequence

MXSSTEFAPFCSVEGAEVRSSGGWAVIFVVAGVELGRLAGVVFFRADEVGSVTXKAATSHGYSQHQDDESVGSEVGSAISVVDGVEGLQILVELLIAPIFPVGSLLRQRDNCQNHLTLLLTEQPLDLHFRFGELRQGX

Homology

[Close]

BLAST of MS028555 vs. NCBI nr
Match: CAB4096857.1 (unnamed protein product [Lactuca saligna])

HSP 1 Score: 91.7 bits (226), Expect = 5.5e-15
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 92  VELLIAPIFPVGSLLRQRDNCQNHLTLLLTEQPLDLHFRFGELRQG 138
           VELLIAPIFPVGSLLRQRDNC NHLTLLLTEQPLD +FRFGELRQG
Sbjct: 22  VELLIAPIFPVGSLLRQRDNCPNHLTLLLTEQPLDFYFRFGELRQG 67

[Close]

BLAST of MS028555 vs. NCBI nr
Match: GER39048.1 (RNA-dependent RNA polymerase [Striga asiatica])

HSP 1 Score: 62.8 bits (151), Expect = 2.7e-06
Identity = 35/51 (68.63%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 20  SSGGWAVIFVVAGVELGRLAGVVFFRADEVGSVT-----XKAATSHGYSQH 66
           SSGGWAVIFVVAGVE GRLAGVV FRADEVGSVT      +   SHG  ++
Sbjct: 204 SSGGWAVIFVVAGVEFGRLAGVVSFRADEVGSVTEGLRCVEVLQSHGLGRY 254

[Close]

BLAST of MS028555 vs. NCBI nr
Match: GFY99289.1 (hypothetical protein Acr_13g0006900 [Actinidia rufa])

HSP 1 Score: 57.8 bits (138), Expect = 8.8e-05
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 69  ESVGSEVGSAISVVDGVEGLQILVELLIAPIFPVGSL 106
           +SV   VGSAI VVDGVEGLQILVELLIAPIFP G+L
Sbjct: 10  DSVDESVGSAIDVVDGVEGLQILVELLIAPIFPAGTL 46

[Close]

BLAST of MS028555 vs. ExPASy TrEMBL
Match: A0A6S7N740 (Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS24445 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.6e-15
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 92  VELLIAPIFPVGSLLRQRDNCQNHLTLLLTEQPLDLHFRFGELRQG 138
           VELLIAPIFPVGSLLRQRDNC NHLTLLLTEQPLD +FRFGELRQG
Sbjct: 22  VELLIAPIFPVGSLLRQRDNCPNHLTLLLTEQPLDFYFRFGELRQG 67

[Close]

BLAST of MS028555 vs. ExPASy TrEMBL
Match: A0A5A7Q2I0 (RNA-dependent RNA polymerase OS=Striga asiatica OX=4170 GN=STAS_15577 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-06
Identity = 35/51 (68.63%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 20  SSGGWAVIFVVAGVELGRLAGVVFFRADEVGSVT-----XKAATSHGYSQH 66
           SSGGWAVIFVVAGVE GRLAGVV FRADEVGSVT      +   SHG  ++
Sbjct: 204 SSGGWAVIFVVAGVEFGRLAGVVSFRADEVGSVTEGLRCVEVLQSHGLGRY 254

[Close]

BLAST of MS028555 vs. ExPASy TrEMBL
Match: A0A7J0FM97 (NADH-ubiquinone oxidoreductase chain 5 OS=Actinidia rufa OX=165716 GN=Acr_13g0006900 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.2e-05
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 69  ESVGSEVGSAISVVDGVEGLQILVELLIAPIFPVGSL 106
           +SV   VGSAI VVDGVEGLQILVELLIAPIFP G+L
Sbjct: 10  DSVDESVGSAIDVVDGVEGLQILVELLIAPIFPAGTL 46

The following BLAST results are available for this feature:

BLAST of MS028555 vs. NCBI nr


Match Name	E-value	Identity	Description
CAB4096857.1	5.5e-15	93.48	unnamed protein product [Lactuca saligna]	[more]
GER39048.1	2.7e-06	68.63	RNA-dependent RNA polymerase [Striga asiatica]	[more]
GFY99289.1	8.8e-05	81.08	hypothetical protein Acr_13g0006900 [Actinidia rufa]	[more]

BLAST of MS028555 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS028555 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6S7N740	2.6e-15	93.48	Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS24445 PE=4 SV=1	[more]
A0A5A7Q2I0	1.3e-06	68.63	RNA-dependent RNA polymerase OS=Striga asiatica OX=4170 GN=STAS_15577 PE=4 SV=1	[more]
A0A7J0FM97	4.2e-05	81.08	NADH-ubiquinone oxidoreductase chain 5 OS=Actinidia rufa OX=165716 GN=Acr_13g000...	[more]

BLAST of MS028555 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS028555.1	MS028555.1	mRNA