MS028552 (gene) Bitter gourd (TR) v1

Overview
NameMS028552
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold29: 338188 .. 341123 (+)
RNA-Seq ExpressionMS028552
SyntenyMS028552
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTGGCCGAACCTTTGGCTCTGATACCACTTGTCATGGCGCTAAGTCCTTCAAGCCCACAAACCGCGGCACCCTGCGAACCTAACGGTCCGCTGTAGCAGAGTAAGCTGAAAAAGCCCTTTCGAGATTCTTAGTCAAGCCTCAACGCCCTGCAATCTTTCTAAAGCGCTAACGCCTTTACGCCGTCGACGATAATACTCTAATTAATAAGGGCGTATTAGAGTCGACGGCTTTCGCGCAGCTCAATCCCTTGCTTTGTTCGAGAGTAAGGGGCCTTTTCTTGCAGGATGCCAGGTGCGCAGGAACGCCCAACCGGGTTTCCGCCTTCATTTTGTCGTGCTGCTATGATGTAACGTGCAGTCGTCCCGAGGCAGCAGGATGTATGGTATAGGGCTCCCTATTTTCTCTCCCAACAAGTCCTTGATAGATTTCGAGTCGGGAATAGAGCTGTGGCTTATTCGGCGCTATATCACAATTCATTCATTTTCGGGCATAGCAGTTCACGAAACGTGGCATGGGACATCTGTCGGCGGCGGGAGTCTGACATCCGAGCGAGAGGTCAGACCAATCCAATTCATCCTGGTCCGATCCGAACGGATCTTGTTGAATGAATTGATCCATTGTTGTATGCCCTACTTCTTAGTGAATTTTTTCCTACTTGGACCCGCCGTACTTCCTTTGACGACTCCTGAGATATAGTGGAAACATTTTGTTATGGTGGAGAGTGGGGAGTGAAAACACCAATGCAGCAGAGAACGACCGCATGAATCGGAATCCACAACGAGAAAGACAGACGACCGAGAAAGAAAGGCTCCACGTTCTCCAAGTGGTTGATCTTAGCGTGCTAGCCGCAGCTTCATTTCGTATAGTGATAACGCTTTCTCTTTCTTAGCGCTCCGCCCCCCCTTGTATAGTAAGGGGAACTCTGGTTGCGCGGCTTTCTCTTATCTTATAGGGGTCTATTTTCTCTGACTTGACTCAGCTTGACCTACTTGACTCAGCGGTTAGAGTATCGCTTTCATACGGCGAGAGTCATTGGTTCAAATCCAATAGTAGGTAAAACCGGCCGAAACCCCTGCTTTTGCCAGCATGACAGCAAGCACAGACTGGCAGCAAGGAGTCAACTGAATGACCAAAGCATCGGTTGCTTCCACTTGTGGCCTTCTTCGACCGCCTTGACGCCTTAATATCAAGGAACCCCCCTCTCTTCTTCTCTTCATGTATGTGGGCTGCCTGCCCCGTCCCGAATAGACGAACAGGAACAAGCTGAAGAAAGGCACGAGAGAGAGAGTTGATACTCAACTCACCTCCCCTCTTCCACAATTAGGTGAAGACCAGGGGAGGGGGGCCGGAAACCCCAACGGGAAACCTTTCACCGCGCCACACGATTCTTTCGCGAAGCGCTCTCTCAGACGTTTCCACTCCTGCCCCCGCAAGCAAAGAGGTTTCATTCAAGATACCAGGCGACCAAATGAAAGTGAACAGCCCCGAGCAAATCTTCTAGAGAGCGTACCCTTTGTTTCGACTCTTTCTCTCTTCTAAAAAAAAAACGAAAAAGAAAAAGAATAATATTTGGATTCTATGGACCCCTTGGACCTCCGACCAATGAGGTGATGACACATGCATGCGTGCACATGAACTTATAAAAAGTGGGTTCCAAACCTGGGTGGCACTATGTAACTCAATCCATGAGAGGGCGTTGGGTGGATTTTTTTTAATTTTAGAATAGACTCTGATCTCGAGGAGACTTTAAGGAGATTTTGTCGAGATAAGGACTTGCAAAAGTCGAGTAGTCGCAGAAGTAAGGTCTCAGACTCGCAGAAGACAAGTGAAAAGTATCTCGAGGTTTCGCCGTGGGAATTTCGCGAGAGTTTTCGCCGCTTTGAAACAATAAGTTTCAAAATCTCGCAAAAATGCAGCGTGGTTTTTCTCTAAAAACTCGGAAGGTTCCGCCAGAAATAGTTTGGGATTCAATCGTTTGGTCTTTTGAAGTTCCCTGATTGGTTTGAGAACCTGATTGAAGAAGACCTGCATTTTTGAATACACGTAGATCTGCAGATCCAGTGTTTGAAGTTATTATAGTGTGTTTCGATTCCACAGTTCAGACAGAGACATTGTTGAGTATGTGGCTTGACTTACTCCAAGGTGACTCAAGTCTTGATTGAGCAGTCATTTTTCGTAGTCACGGGTCCTGCTTTAGCACTGTTTCACATTTGAAACTGTAGAGGGCGGTTTGTGACCTTCCAATTTTCTAGTGACGGGGGTCGTGAGAGATAGCAAAAGGATGCATCCATTTCTAGGCTAATTCAGTGTCTTGTGGATGCTATCTATGAGGTAGTTAGACACGCCCCTTGCTTGGGGGATCTGTTGGGTCTTTTAAAAGGACTCCATCTGCAGGGCACAAACAAATGAAGGGAAAGCATGCTGTTTTTCTGAGGTTGGGTTTTGAGATGAGAGTAGGATACACACGTCGAAGAAATCCGTTGTCTAGAGAGAGTGGAGTGATCTCAAAGAGTTTTCGATTTTCATATTTCAAACGTCGACTTTGATATTGAGAGAAATATATATTATATATCGTTTTTCGAATCAAATCAAACGATATTTCTCATTTGCTGCCACTCAACAACAGCAGGTCTCAGCTCTGCACATTCCTAGAAATTTGTTCTTTCTTTCAGCTAAAGATTGTTATCATCTGGTATGAGAGTCCAGGTTATGCAGATATGGTAGCGATACAATCTTCTGGATCTATAGTTGCTGATATGATTACTGCATTAACGCATACGATTGTCAAGGATCGCAAAATGGAACCTCTAAATGTAGATGTTTGGAAGATGAGAATGCAGTTGCTTCTCAAAGAACAGGATCTTTTTTTTTCATTCTTGAGAAAAGAGAAGCCCGCAGATCTGGCGCTAATGGCTTCTTCAATCAAGTGA

mRNA sequence

ATGGCTTGGCCGAACCTTTGGCTCTGATACCACTTGTCATGGCGCTAAGTCCTTCAAGCCCACAAACCGCGGCACCCTGCGAACCTAACGGTCCGCTGTAGCAGAGATGCCAGGTGCGCAGGAACGCCCAACCGGGTTTCCGCCTTCATTTTGTCGTGCTGCTATGATGTAACGTGCAGTCGTCCCGAGGCAGCAGGATGTATGCTAAAGATTGTTATCATCTGGTATGAGAGTCCAGGTTATGCAGATATGGTAGCGATACAATCTTCTGGATCTATAGTTGCTGATATGATTACTGCATTAACGCATACGATTGTCAAGGATCGCAAAATGGAACCTCTAAATGTAGATGTTTGGAAGATGAGAATGCAGTTGCTTCTCAAAGAACAGGATCTTTTTTTTTCATTCTTGAGAAAAGAGAAGCCCGCAGATCTGGCGCTAATGGCTTCTTCAATCAAGTGA

Coding sequence (CDS)

ATGGCTTGGCCGAACCTTTGGCTCTGATACCACTTGTCATGGCGCTAAGTCCTTCAAGCCCACAAACCGCGGCACCCTGCGAACCTAACGGTCCGCTGTAGCAGAGATGCCAGGTGCGCAGGAACGCCCAACCGGGTTTCCGCCTTCATTTTGTCGTGCTGCTATGATGTAACGTGCAGTCGTCCCGAGGCAGCAGGATGTATGCTAAAGATTGTTATCATCTGGTATGAGAGTCCAGGTTATGCAGATATGGTAGCGATACAATCTTCTGGATCTATAGTTGCTGATATGATTACTGCATTAACGCATACGATTGTCAAGGATCGCAAAATGGAACCTCTAAATGTAGATGTTTGGAAGATGAGAATGCAGTTGCTTCTCAAAGAACAGGATCTTTTTTTTTCATTCTTGAGAAAAGAGAAGCCCGCAGATCTGGCGCTAATGGCTTCTTCAATCAAGTGA

Protein sequence

MAWPNLWLUYHLSWRUVLQAHKPRHPANLTVRCSRDARCAGTPNRVSAFILSCCYDVTCSRPEAAGCMLKIVIIWYESPGYADMVAIQSSGSIVADMITALTHTIVKDRKMEPLNVDVWKMRMQLLLKEQDLFFSFLRKEKPADLALMASSIK
Homology
[Close]
BLAST of MS028552 vs. NCBI nr
Match: XP_030439504.1 (uncharacterized protein LOC115661349 [Syzygium oleosum])

HSP 1 Score: 139.8 bits (351), Expect = 1.9e-29
Identity = 72/81 (88.89%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 69  LKIVIIWYESPGYADMVAIQSSGSIVADMITALTHTIVKDRKMEPLNVDVWKMRMQLLLK 128
           LKIVIIWYESPG  DMV IQSSGS+VADMITALTHTIVK RK+ P NVDVWKMRMQ LLK
Sbjct: 323 LKIVIIWYESPGCEDMVVIQSSGSMVADMITALTHTIVKHRKIFPRNVDVWKMRMQFLLK 382

Query: 129 EQDLFFSFLRKEKPADLALMA 150
           EQDLFFSFLRKEKPADLALMA
Sbjct: 383 EQDLFFSFLRKEKPADLALMA 403

[Close]
BLAST of MS028552 vs. NCBI nr
Match: KAF3452167.1 (hypothetical protein FNV43_RR08265 [Rhamnella rubrinervis])

HSP 1 Score: 122.1 bits (305), Expect = 4.2e-24
Identity = 63/74 (85.14%), Postives = 66/74 (89.19%), Query Frame = 0 

Query: 69  LKIVIIWYESPGYADMVAIQSSGSIVADMITALTHTIVKDRKMEPLNVDVWKMRMQLLLK 128
           LKIVIIWYESPG ADMVAIQSSGS+VADMITALTHTIVK RKMEPLNVDVWKMRMQLLLK
Sbjct: 148 LKIVIIWYESPGCADMVAIQSSGSMVADMITALTHTIVKHRKMEPLNVDVWKMRMQLLLK 207

Query: 129 EQDLFFSFLRKEKP 143
           EQDL  +  +K  P
Sbjct: 208 EQDLLKNEKKKRSP 221

[Close]
BLAST of MS028552 vs. NCBI nr
Match: TQE06473.1 (hypothetical protein C1H46_007972 [Malus baccata])

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-08
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 84  MVAIQSSGSIVADMITALTHTIVKDRKMEPLNVDVWKM 122
           MVAIQSSGS+VADMIT LTHTIVK RKMEPLNVDVWKM
Sbjct: 39  MVAIQSSGSMVADMITPLTHTIVKHRKMEPLNVDVWKM 76

[Close]
BLAST of MS028552 vs. ExPASy TrEMBL
Match: A0A540N7F5 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_007972 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 7.0e-09
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 84  MVAIQSSGSIVADMITALTHTIVKDRKMEPLNVDVWKM 122
           MVAIQSSGS+VADMIT LTHTIVK RKMEPLNVDVWKM
Sbjct: 39  MVAIQSSGSMVADMITPLTHTIVKHRKMEPLNVDVWKM 76

The following BLAST results are available for this feature:
BLAST of MS028552 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_030439504.11.9e-2988.89uncharacterized protein LOC115661349 [Syzygium oleosum][more]
KAF3452167.14.2e-2485.14hypothetical protein FNV43_RR08265 [Rhamnella rubrinervis][more]
TQE06473.11.4e-0892.11hypothetical protein C1H46_007972 [Malus baccata][more]
BLAST of MS028552 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS028552 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A540N7F57.0e-0992.11Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_007972 PE=4 SV=1[more]
BLAST of MS028552 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS028552.1MS028552.1mRNA