MS028551 (gene) Bitter gourd (TR) v1

Overview
NameMS028551
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMaturase-related protein
Locationscaffold29: 337497 .. 337973 (+)
RNA-Seq ExpressionMS028551
SyntenyMS028551
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTCTGTTATCATTTCCAGTTGGACGACATTAATCCAATTTGAGGAAGAAACGAACTCTTTCCATTTTTTTTTAGGGCTTGGAGCAGATGAAGCCTTCCTTCTTTCTTCTCGGTCCGCTTCTTTGGCTCCTGATCTTGAGCTCGCTTTTCTTGGCCTCAGGCTTGGCTTATTCTTGGAGTCCTTGCCTTTTCGATACTTTAGGCCCTTGCCCTTGGCCTGGTCTCGACTCCCCCTGGCTAAGTACTTTCAATCTAGCAGGCTAGCTGCCTGTTCCGCCCCTAAGTCTTGGACATTTTGGCGTAGGTTGGAGCCCCTTCATTCAATCGAAGAGCCGGTCCTCTTCCGTCATATCAAAAATGTCCAGGGAGAACTACGAAAGATGGCCTTCACATACTCGCGTATGGAGCCTGTTTGCTTCAGGCTCATCAACATGTCGGACCACAACCGGGCAGGAACCCTCCATTCTGCCTGA

mRNA sequence

ATGCATTCTGTTATCATTTCCAGTTGGACGACATTAATCCAATTTGAGGAAGAAACGAACTCTTTCCATTTTTTTTTAGGGCTTGGAGCAGATGAAGCCTTCCTTCTTTCTTCTCGGTCCGCTTCTTTGGCTCCTGATCTTGAGCTCGCTTTTCTTGGCCTCAGGCTTGGCTTATTCTTGGAGTCCTTGCCTTTTCGATACTTTAGGCCCTTGCCCTTGGCCTGGTCTCGACTCCCCCTGGCTAAGTACTTTCAATCTAGCAGGCTAGCTGCCTGTTCCGCCCCTAAGTCTTGGACATTTTGGCGTAGGTTGGAGCCCCTTCATTCAATCGAAGAGCCGGTCCTCTTCCGTCATATCAAAAATGTCCAGGGAGAACTACGAAAGATGGCCTTCACATACTCGCGTATGGAGCCTGTTTGCTTCAGGCTCATCAACATGTCGGACCACAACCGGGCAGGAACCCTCCATTCTGCCTGA

Coding sequence (CDS)

ATGCATTCTGTTATCATTTCCAGTTGGACGACATTAATCCAATTTGAGGAAGAAACGAACTCTTTCCATTTTTTTTTAGGGCTTGGAGCAGATGAAGCCTTCCTTCTTTCTTCTCGGTCCGCTTCTTTGGCTCCTGATCTTGAGCTCGCTTTTCTTGGCCTCAGGCTTGGCTTATTCTTGGAGTCCTTGCCTTTTCGATACTTTAGGCCCTTGCCCTTGGCCTGGTCTCGACTCCCCCTGGCTAAGTACTTTCAATCTAGCAGGCTAGCTGCCTGTTCCGCCCCTAAGTCTTGGACATTTTGGCGTAGGTTGGAGCCCCTTCATTCAATCGAAGAGCCGGTCCTCTTCCGTCATATCAAAAATGTCCAGGGAGAACTACGAAAGATGGCCTTCACATACTCGCGTATGGAGCCTGTTTGCTTCAGGCTCATCAACATGTCGGACCACAACCGGGCAGGAACCCTCCATTCTGCCTGA

Protein sequence

MHSVIISSWTTLIQFEEETNSFHFFLGLGADEAFLLSSRSASLAPDLELAFLGLRLGLFLESLPFRYFRPLPLAWSRLPLAKYFQSSRLAACSAPKSWTFWRRLEPLHSIEEPVLFRHIKNVQGELRKMAFTYSRMEPVCFRLINMSDHNRAGTLHSA
Homology
[Close]
BLAST of MS028551 vs. NCBI nr
Match: BBN70348.1 (hypothetical protein Prudu_1460S000900 [Prunus dulcis])

HSP 1 Score: 190.3 bits (482), Expect = 1.3e-44
Identity = 103/129 (79.84%), Postives = 103/129 (79.84%), Query Frame = 0 

Query: 27  GLGADEAFLLSSRSASLAPDLELAFLGLRLGLFLESLPFRYFRPLPLAWSR-LPLAKYFQ 86
           GLGADEAFLLSSRSA LAPDLELAFLGLRLG FLESLPFRYFRPLPLAWSR  PLAKYFQ
Sbjct: 28  GLGADEAFLLSSRSA-LAPDLELAFLGLRLGFFLESLPFRYFRPLPLAWSRPPPLAKYFQ 87

Query: 87  SSRLAACSAPKSWTFWRRLEPLHSIEEPVLFRHIKNVQGELRKMAFTYSRMEPVCFRLIN 146
           SSRLAA SAPKSWTFWRRLEPLH IEEPVLFRH         K           CFRLIN
Sbjct: 88  SSRLAAYSAPKSWTFWRRLEPLHEIEEPVLFRH--KCPARTTKEGLHILAYGACCFRLIN 147

Query: 147 MSDHNRAGT 155
           MSDHNRAGT
Sbjct: 148 MSDHNRAGT 153

[Close]
BLAST of MS028551 vs. NCBI nr
Match: KAF5939466.1 (hypothetical protein HYC85_023725 [Camellia sinensis])

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-07
Identity = 39/46 (84.78%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 27  GLGADEAFLLSSRSASLAPDLELAFLGLRLGLFLESLPFRYFRPLP 73
           GLGADEAFLLSSRSA LAPDLELA L LRL   +ESLPFRYFRPLP
Sbjct: 283 GLGADEAFLLSSRSA-LAPDLELAVLDLRL---VESLPFRYFRPLP 324

[Close]
BLAST of MS028551 vs. NCBI nr
Match: YP_009526582.1 (maturase-related protein [Ammopiptanthus mongolicus] >AXV54341.1 maturase-related protein [Ammopiptanthus mongolicus])

HSP 1 Score: 58.2 bits (139), Expect = 7.7e-05
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 26  LGLGADEAFLLSSRSASLAPDLELAFLGLRLGLFL 61
           +GLGADEAFLLSSRSA LAPDLELAFLGLRLG FL
Sbjct: 843 MGLGADEAFLLSSRSA-LAPDLELAFLGLRLGFFL 876

[Close]
BLAST of MS028551 vs. ExPASy TrEMBL
Match: A0A5H2XR91 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_1460S000900 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 6.3e-45
Identity = 103/129 (79.84%), Postives = 103/129 (79.84%), Query Frame = 0 

Query: 27  GLGADEAFLLSSRSASLAPDLELAFLGLRLGLFLESLPFRYFRPLPLAWSR-LPLAKYFQ 86
           GLGADEAFLLSSRSA LAPDLELAFLGLRLG FLESLPFRYFRPLPLAWSR  PLAKYFQ
Sbjct: 28  GLGADEAFLLSSRSA-LAPDLELAFLGLRLGFFLESLPFRYFRPLPLAWSRPPPLAKYFQ 87

Query: 87  SSRLAACSAPKSWTFWRRLEPLHSIEEPVLFRHIKNVQGELRKMAFTYSRMEPVCFRLIN 146
           SSRLAA SAPKSWTFWRRLEPLH IEEPVLFRH         K           CFRLIN
Sbjct: 88  SSRLAAYSAPKSWTFWRRLEPLHEIEEPVLFRH--KCPARTTKEGLHILAYGACCFRLIN 147

Query: 147 MSDHNRAGT 155
           MSDHNRAGT
Sbjct: 148 MSDHNRAGT 153

[Close]
BLAST of MS028551 vs. ExPASy TrEMBL
Match: A0A7J7GJ81 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_023725 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.0e-07
Identity = 39/46 (84.78%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 27  GLGADEAFLLSSRSASLAPDLELAFLGLRLGLFLESLPFRYFRPLP 73
           GLGADEAFLLSSRSA LAPDLELA L LRL   +ESLPFRYFRPLP
Sbjct: 283 GLGADEAFLLSSRSA-LAPDLELAVLDLRL---VESLPFRYFRPLP 324

[Close]
BLAST of MS028551 vs. ExPASy TrEMBL
Match: A0A385G2D4 (Maturase-related protein OS=Ammopiptanthus mongolicus OX=126911 GN=matR PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.7e-05
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 26  LGLGADEAFLLSSRSASLAPDLELAFLGLRLGLFL 61
           +GLGADEAFLLSSRSA LAPDLELAFLGLRLG FL
Sbjct: 843 MGLGADEAFLLSSRSA-LAPDLELAFLGLRLGFFL 876

The following BLAST results are available for this feature:
BLAST of MS028551 vs. NCBI nr
Match NameE-valueIdentityDescription
BBN70348.11.3e-4479.84hypothetical protein Prudu_1460S000900 [Prunus dulcis][more]
KAF5939466.12.2e-0784.78hypothetical protein HYC85_023725 [Camellia sinensis][more]
YP_009526582.17.7e-0591.43maturase-related protein [Ammopiptanthus mongolicus] >AXV54341.1 maturase-relate... [more]
BLAST of MS028551 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS028551 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5H2XR916.3e-4579.84Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_1460S000900 PE=4 SV=1[more]
A0A7J7GJ811.0e-0784.78Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_023725 PE=3 SV=1[more]
A0A385G2D43.7e-0591.43Maturase-related protein OS=Ammopiptanthus mongolicus OX=126911 GN=matR PE=4 SV=... [more]
BLAST of MS028551 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS028551.1MS028551.1mRNA