MS028545 (gene) Bitter gourd (TR) v1

Overview
NameMS028545
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNADH-ubiquinone oxidoreductase chain 2
Locationscaffold29: 328824 .. 329129 (-)
RNA-Seq ExpressionMS028545
SyntenyMS028545
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGCGGCAAAGACCCGCAACTCTCGAAGAGGAAGAGGCCACCAACCGCCCGAATCACTGTAGCAAACCCTCCCTTTACTCAATGGATAGCGCTTTTATCCTCTTTCAAGGGAAAAAAGAAGAAATGACGGAGAAACTAGTGATGATTGCCATGAATGCAGCCTTCGAGGACGTGTACAAGAAGGTCTTTGCCGATTCCTATCAACATGGTGCACCTCTCAGTAGAGGGGCCCGTGGAGACTTTGACCGAATGAATAGGGATCAATTTCTCGACATTTTTATTGAGGAAGAGAATCCAGGATGA

mRNA sequence

ATGCAGCGGCAAAGACCCGCAACTCTCGAAGAGGAAGAGGCCACCAACCGCCCGAATCACTGTAGCAAACCCTCCCTTTACTCAATGGATAGCGCTTTTATCCTCTTTCAAGGGAAAAAAGAAGAAATGACGGAGAAACTAGTGATGATTGCCATGAATGCAGCCTTCGAGGACGTGTACAAGAAGGTCTTTGCCGATTCCTATCAACATGGTGCACCTCTCAGTAGAGGGGCCCGTGGAGACTTTGACCGAATGAATAGGGATCAATTTCTCGACATTTTTATTGAGGAAGAGAATCCAGGATGA

Coding sequence (CDS)

ATGCAGCGGCAAAGACCCGCAACTCTCGAAGAGGAAGAGGCCACCAACCGCCCGAATCACTGTAGCAAACCCTCCCTTTACTCAATGGATAGCGCTTTTATCCTCTTTCAAGGGAAAAAAGAAGAAATGACGGAGAAACTAGTGATGATTGCCATGAATGCAGCCTTCGAGGACGTGTACAAGAAGGTCTTTGCCGATTCCTATCAACATGGTGCACCTCTCAGTAGAGGGGCCCGTGGAGACTTTGACCGAATGAATAGGGATCAATTTCTCGACATTTTTATTGAGGAAGAGAATCCAGGATGA

Protein sequence

MQRQRPATLEEEEATNRPNHCSKPSLYSMDSAFILFQGKKEEMTEKLVMIAMNAAFEDVYKKVFADSYQHGAPLSRGARGDFDRMNRDQFLDIFIEEENPG
Homology
BLAST of MS028545 vs. NCBI nr
Match: KZM91154.1 (hypothetical protein DCAR_021481 [Daucus carota subsp. sativus])

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-07
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 0

Query: 45 EKLVMIAMNAAFEDVYKKVFADSYQHGAPLSRG 78
          EKLVMIAMNAA EDVYKKVFADSYQHGAPLSRG
Sbjct: 29 EKLVMIAMNAALEDVYKKVFADSYQHGAPLSRG 61

BLAST of MS028545 vs. NCBI nr
Match: EEF24045.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-07
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 0

Query: 45  EKLVMIAMNAAFEDVYKKVFADSYQHGAPLSRGA 79
           +K+VMIAMNAA EDVYKKVFADSYQHGAPLSRGA
Sbjct: 120 DKVVMIAMNAALEDVYKKVFADSYQHGAPLSRGA 153

BLAST of MS028545 vs. NCBI nr
Match: KAG8362757.1 (hypothetical protein BUALT_BualtUnG0039200 [Buddleja alternifolia] >KAG8363178.1 hypothetical protein BUALT_BualtMtG0006100 [Buddleja alternifolia])

HSP 1 Score: 65.9 bits (159), Expect = 2.4e-07
Identity = 32/34 (94.12%), Postives = 32/34 (94.12%), Query Frame = 0

Query: 45  EKLVMIAMNAAFEDVYKKVFADSYQHGAPLSRGA 79
           EKLVMIAMNAA EDVYKKVFADSYQHGA LSRGA
Sbjct: 119 EKLVMIAMNAALEDVYKKVFADSYQHGASLSRGA 152

BLAST of MS028545 vs. NCBI nr
Match: KJB09758.1 (hypothetical protein B456_001G164800, partial [Gossypium raimondii])

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-06
Identity = 33/35 (94.29%), Postives = 33/35 (94.29%), Query Frame = 0

Query: 45  EKLVMIAMNAAFEDV-YKKVFADSYQHGAPLSRGA 79
           EK VMIAMNAAFEDV YKKVFADSYQHGAPLSRGA
Sbjct: 275 EKDVMIAMNAAFEDVLYKKVFADSYQHGAPLSRGA 309

BLAST of MS028545 vs. NCBI nr
Match: XP_016652391.1 (PREDICTED: NADH-ubiquinone oxidoreductase chain 2 [Prunus mume])

HSP 1 Score: 62.4 bits (150), Expect = 2.6e-06
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 0

Query: 45 EKLVMIAMNAAFEDVYKKVFADSYQHGAPLSR 77
          +KLVMIAMNAA EDVYK+VFADSYQHGAPLSR
Sbjct: 55 DKLVMIAMNAALEDVYKRVFADSYQHGAPLSR 86

BLAST of MS028545 vs. ExPASy TrEMBL
Match: A0A164W1F3 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021481 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.1e-08
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 0

Query: 45 EKLVMIAMNAAFEDVYKKVFADSYQHGAPLSRG 78
          EKLVMIAMNAA EDVYKKVFADSYQHGAPLSRG
Sbjct: 29 EKLVMIAMNAALEDVYKKVFADSYQHGAPLSRG 61

BLAST of MS028545 vs. ExPASy TrEMBL
Match: B9TJC0 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1975680 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 6.7e-08
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 0

Query: 45  EKLVMIAMNAAFEDVYKKVFADSYQHGAPLSRGA 79
           +K+VMIAMNAA EDVYKKVFADSYQHGAPLSRGA
Sbjct: 120 DKVVMIAMNAALEDVYKKVFADSYQHGAPLSRGA 153

BLAST of MS028545 vs. ExPASy TrEMBL
Match: A0A0D2NA98 (Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_001G164800 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.7e-07
Identity = 33/35 (94.29%), Postives = 33/35 (94.29%), Query Frame = 0

Query: 45  EKLVMIAMNAAFEDV-YKKVFADSYQHGAPLSRGA 79
           EK VMIAMNAAFEDV YKKVFADSYQHGAPLSRGA
Sbjct: 275 EKDVMIAMNAAFEDVLYKKVFADSYQHGAPLSRGA 309

BLAST of MS028545 vs. ExPASy TrEMBL
Match: A0A6J5WLW5 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS43023 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-05
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 0

Query: 45 EKLVMIAMNAAFEDVYKKVFADSYQHGAPL 75
          +KLVMIAMNAA EDVYK+VFADSYQHGAPL
Sbjct: 55 DKLVMIAMNAALEDVYKRVFADSYQHGAPL 84

BLAST of MS028545 vs. ExPASy TrEMBL
Match: A0A2U1PN00 (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA134460 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.1e-05
Identity = 27/29 (93.10%), Postives = 27/29 (93.10%), Query Frame = 0

Query: 45 EKLVMIAMNAAFEDVYKKVFADSYQHGAP 74
          EKLVMIA NAA EDVYKKVFADSYQHGAP
Sbjct: 28 EKLVMIATNAALEDVYKKVFADSYQHGAP 56

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KZM91154.11.1e-0796.97hypothetical protein DCAR_021481 [Daucus carota subsp. sativus][more]
EEF24045.11.4e-0791.18conserved hypothetical protein [Ricinus communis][more]
KAG8362757.12.4e-0794.12hypothetical protein BUALT_BualtUnG0039200 [Buddleja alternifolia] >KAG8363178.1... [more]
KJB09758.11.2e-0694.29hypothetical protein B456_001G164800, partial [Gossypium raimondii][more]
XP_016652391.12.6e-0690.63PREDICTED: NADH-ubiquinone oxidoreductase chain 2 [Prunus mume][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A164W1F35.1e-0896.97Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021481 ... [more]
B9TJC06.7e-0891.18Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1975680 PE=4 SV=1[more]
A0A0D2NA985.7e-0794.29Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_001G1... [more]
A0A6J5WLW51.4e-0590.00Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS43023 PE=4 S... [more]
A0A2U1PN004.1e-0593.10Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA134460 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS028545.1MS028545.1mRNA