MS028521 (gene) Bitter gourd (TR) v1

Overview
NameMS028521
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNADH-ubiquinone oxidoreductase chain 5
Locationscaffold29: 199108 .. 201544 (-)
RNA-Seq ExpressionMS028521
SyntenyMS028521
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCGTGGCCGCCTGCCTGGTGGGGGCGGCTCCTCCGTTGTGGGTAAACGGGAAACCCGACTCTACGAACCCGAGGAAAGGCTGCACAGCAGTAGTAAGGGCGTTAAGACCGGAGCTTTTTGTAGTGCTAGCAGTAATGCAAGTGAATGAATCCCATCCCCTATCAAGTGAAGTGCTTACGCCCCTTTAGAGATAGGGGCGAGCAAAAGAGCTCGTTCTTCTATTTTGAGATCTTTAGATTCGTAAGATCATGATAGAGTCCCCTTTACTTGATATTCAATTATTAAAGCTCCCGCCGCCCTACAACTAGTATAGTATAGCAGAGCTGCCAGCTTCAAAGCTGACCTTCTTATTAGAGAAAGGGGCGCGCTAGGCTAGCGCTAGAATAATATACATATACAAGGTTAGGGGGCTGAAAAGCTGTTGTTTGCTGTCTACTTCGCGAGCCTTCACAGCCCCGTTCTGTAACTTCCCTTCTTTCGTCCGTCCACGAGGCTGTAAAAAGAGAGAAAGGGGCGGCTATCTAGTGGGAGTCGTTTCGGTTGTATGCCACGAGGTCCCTATGGACAAGGGGACAAGTGAATCATCGCTTTTGGGCGCAGGCAGCCCTCTACCATCCATCCCATTGCATTCCATCGTCTCGTATTGCTTTACTAAGCCGTATCAGACCAGATACATCTATTGAGTGAGAGAAAGGGAGAAAACTCTAAATATTCTTCATTTTTCTATTGATAGGGATCCCCATTCATTCCTAGATTCCCGTCACTACGGATTGATTGTCCCTACCTAACTACATGGTAGTGGTCTAGGGAGCGCAATTGCTAGAGCACGGGAGAATTAAGAGTAATGATTTCAGCAAGAGCAGCCGGACGGACTACTATAGTGAGTCTAGTGACTACTAGAGTCGGTCGAGTTGAGTCAAAAGGTATGGTATAGCAGCCTTTCCGAGCGAGCCTCTGGGATCTCCTGTAAACCCCCATGATGTGGTAAAGGGAGGATATTAGGGGAAGCAGTGAGTGGAGATTCCCCTGCAGAGAGCCGGATGAGGGGAGACCTTCACGTCCGGTTCGGAGGGCGGGGATATCCCGACCCTACTATCATTATGCCTTTGCAATGTTACTTGGTTTAACTCTATTTGTGACCTTTTCTCGTATGTGGGACTCTCTATCTTCTTGGGTAGATAATCGATCGTCTTTCATTTTGATAGTGAGTCGTTTTTATAATAATAAGTAAAGTCAAGAATAATAATAGAACTGGAGGAGCTTGCCAGGATGGCTTGGTAAGCAAGCAACCTGTTATGTAGGCGCCAACTCCAAGTTCTTTCTCTTCTTTCTTTTTTAGTTTAGTGAGAGTTCATCAAAACAATTGCCCAAGATTGCTAGATCGAGCACGCGACGCGCATAGTCTTAAGTTCAAGAGCGGGTTGTCTCCTCTTCAACATTTCGACTACTACTTCCTTGCCTTCCCTTTTCAGAGATCTCCTTGTTCTCTTCCCAGATTTTCCTCCATACCTTCCCTCTTCTTTCTTTGTGGCTTCTTCATCATGTTGTTCCATCCTTCAGGGATGTTCGGTAGGTGTCCGGGCCTCCTAAAAAATCCTTCCGACAAGAATGCTGCTTGAACATTGTAAGACATTGAACCGTCTTGCTCTTGTGAACACTGATCATAAGTGGCAAAAGCCGCCGGAATCCTCATTTTTTGTCCATAAGCTCTCCTCGCTACTGTAATAATTTCAAATGTCTTTTTATACACTGGCGCGGATGATTGCCCCTAAGGCACCGATGGACCAAGGCCTTCGTCTATCACCCGAATTTCTTGATTCACGGCGTCGAGTATTTGCACTTTCGATTTCGTGACTCGACCTGTAGACGGTGATACCGCCACCTTCGGAGACGTGATCCTCTCTTATTCACTTGTGCTGGTGCTCATGAAAAGCTTGGAGGTCGGCGCCTGTGTTCTGGCTCTGGGGGGGTGTTCCCTTTCTCAATTATGACGTACTAGGTTAGGTTGCCATCTAGGTCTCGGTCGGGGGTGACTTCAAAATTCTGGTAACATTCTTCCCTTCCCTTGATTCACGATCCTTGCTGCTGAATTAATCCCCCATGTGTCGGGACCTGAACCGTGGTGGTGCTCTTCTACAGCTTCTTCAATTACATAGATAACAGCTCCTCCACTTCTGGAATTGATAAAGGAAACCTTTCCAAGCCCGAACAAGATCGGAAGAACTGATTGCTTTCTACAATAACAAAATAGTTATCTACTAGCCATGTTTTCTTTCTGTGAGAATGCCGTAGGACTCCAGGAATTTTTGAAGCTGAACATGCTCAAAAGATGCCTGCCTAAAGCATTTCGCTTTGATCATTCGACTGTCCACCGAGTGAAACGGTATCCTCGTATGGACTTGACAGCTTCAGCGTACAAGGACCCGGGCTGA

mRNA sequence

ATGACCCGTGGCCGCCTGCCTGGTGGGGGCGGCTCCTCCGTTGTGGGTAAACGGGAAACCCGACTCTACGAACCCGAGGAAAGGCTGCACAGCAGTAGTAAGGGCGTTAAGACCGGAGCTTTTTGTAGTGCTAGCAGTAATGCAAGACTCCAGGAATTTTTGAAGCTGAACATGCTCAAAAGATGCCTGCCTAAAGCATTTCGCTTTGATCATTCGACTGTCCACCGAGTGAAACGGTATCCTCGTATGGACTTGACAGCTTCAGCGTACAAGGACCCGGGCTGA

Coding sequence (CDS)

ATGACCCGTGGCCGCCTGCCTGGTGGGGGCGGCTCCTCCGTTGTGGGTAAACGGGAAACCCGACTCTACGAACCCGAGGAAAGGCTGCACAGCAGTAGTAAGGGCGTTAAGACCGGAGCTTTTTGTAGTGCTAGCAGTAATGCAAGACTCCAGGAATTTTTGAAGCTGAACATGCTCAAAAGATGCCTGCCTAAAGCATTTCGCTTTGATCATTCGACTGTCCACCGAGTGAAACGGTATCCTCGTATGGACTTGACAGCTTCAGCGTACAAGGACCCGGGCTGA

Protein sequence

MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNARLQEFLKLNMLKRCLPKAFRFDHSTVHRVKRYPRMDLTASAYKDPG
Homology
[Close]
BLAST of MS028521 vs. NCBI nr
Match: TKS02723.1 (NADH dehydrogenase subunit 5 [Populus alba])

HSP 1 Score: 96.3 bits (238), Expect = 1.5e-16
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0 

Query: 1   MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA 49
           MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSAS NA
Sbjct: 170 MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASRNA 217

[Close]
BLAST of MS028521 vs. NCBI nr
Match: KAG6383881.1 (hypothetical protein SASPL_156294 [Salvia splendens] >KAG6384644.1 hypothetical protein SASPL_155487 [Salvia splendens])

HSP 1 Score: 95.5 bits (236), Expect = 2.6e-16
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0 

Query: 1   MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA 49
           MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSS+GVKTGAFCSAS NA
Sbjct: 96  MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSRGVKTGAFCSASKNA 143

[Close]
BLAST of MS028521 vs. NCBI nr
Match: KAF9626616.1 (hypothetical protein IFM89_036477 [Coptis chinensis])

HSP 1 Score: 95.5 bits (236), Expect = 2.6e-16
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0 

Query: 1  MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA 49
          MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSS+GVKTGAFCSAS NA
Sbjct: 1  MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSRGVKTGAFCSASKNA 48

[Close]
BLAST of MS028521 vs. NCBI nr
Match: PPS15510.1 (hypothetical protein GOBAR_AA05069 [Gossypium barbadense])

HSP 1 Score: 87.8 bits (216), Expect = 5.4e-14
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 1   MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA 49
           +TRGRLPGGGGSSVVGKRETRLYEP+ERLHSSSKG+K  AFCSAS NA
Sbjct: 102 ITRGRLPGGGGSSVVGKRETRLYEPKERLHSSSKGIKARAFCSASRNA 149

[Close]
BLAST of MS028521 vs. NCBI nr
Match: CAD1835902.1 (unnamed protein product [Ananas comosus var. bracteatus])

HSP 1 Score: 83.6 bits (205), Expect = 1.0e-12
Identity = 43/51 (84.31%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 1  MTRGRLP---GGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA 49
          M RGRLP   GGGGSSVVGKRETRLYEPEERLHS  +GVKTGAFCSAS NA
Sbjct: 1  MNRGRLPALVGGGGSSVVGKRETRLYEPEERLHSFRRGVKTGAFCSASRNA 51

[Close]
BLAST of MS028521 vs. ExPASy TrEMBL
Match: A0A4U5PYN4 (NADH dehydrogenase subunit 5 OS=Populus alba OX=43335 GN=D5086_0000161240 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 7.3e-17
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0 

Query: 1   MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA 49
           MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSAS NA
Sbjct: 170 MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASRNA 217

[Close]
BLAST of MS028521 vs. ExPASy TrEMBL
Match: A0A4D8YAI0 (NADH-ubiquinone oxidoreductase chain 5 OS=Salvia splendens OX=180675 GN=ND5 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.2e-16
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0 

Query: 1   MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA 49
           MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSS+GVKTGAFCSAS NA
Sbjct: 707 MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSRGVKTGAFCSASKNA 754

[Close]
BLAST of MS028521 vs. ExPASy TrEMBL
Match: A0A2P5YIU1 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA05069 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.6e-14
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 1   MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA 49
           +TRGRLPGGGGSSVVGKRETRLYEP+ERLHSSSKG+K  AFCSAS NA
Sbjct: 102 ITRGRLPGGGGSSVVGKRETRLYEPKERLHSSSKGIKARAFCSASRNA 149

[Close]
BLAST of MS028521 vs. ExPASy TrEMBL
Match: A0A7J0FM97 (NADH-ubiquinone oxidoreductase chain 5 OS=Actinidia rufa OX=165716 GN=Acr_13g0006900 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.9e-13
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 0 

Query: 7   PGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA 49
           PGGGGSSVVGKRETRLYEPEERLHSSS+GVKTGAFCSAS NA
Sbjct: 167 PGGGGSSVVGKRETRLYEPEERLHSSSRGVKTGAFCSASRNA 208

[Close]
BLAST of MS028521 vs. ExPASy TrEMBL
Match: A0A6V7PYE1 (Uncharacterized protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS19113 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.9e-13
Identity = 43/51 (84.31%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 1  MTRGRLP---GGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA 49
          M RGRLP   GGGGSSVVGKRETRLYEPEERLHS  +GVKTGAFCSAS NA
Sbjct: 1  MNRGRLPALVGGGGSSVVGKRETRLYEPEERLHSFRRGVKTGAFCSASRNA 51

The following BLAST results are available for this feature:
BLAST of MS028521 vs. NCBI nr
Match NameE-valueIdentityDescription
TKS02723.11.5e-1697.92NADH dehydrogenase subunit 5 [Populus alba][more]
KAG6383881.12.6e-1695.83hypothetical protein SASPL_156294 [Salvia splendens] >KAG6384644.1 hypothetical ... [more]
KAF9626616.12.6e-1695.83hypothetical protein IFM89_036477 [Coptis chinensis][more]
PPS15510.15.4e-1487.50hypothetical protein GOBAR_AA05069 [Gossypium barbadense][more]
CAD1835902.11.0e-1284.31unnamed protein product [Ananas comosus var. bracteatus][more]
BLAST of MS028521 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS028521 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A4U5PYN47.3e-1797.92NADH dehydrogenase subunit 5 OS=Populus alba OX=43335 GN=D5086_0000161240 PE=4 S... [more]
A0A4D8YAI01.2e-1695.83NADH-ubiquinone oxidoreductase chain 5 OS=Salvia splendens OX=180675 GN=ND5 PE=4... [more]
A0A2P5YIU12.6e-1487.50Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA05069 PE=4 SV... [more]
A0A7J0FM974.9e-1395.24NADH-ubiquinone oxidoreductase chain 5 OS=Actinidia rufa OX=165716 GN=Acr_13g000... [more]
A0A6V7PYE14.9e-1384.31Uncharacterized protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS... [more]
BLAST of MS028521 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..33
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS028521.1MS028521.1mRNA