MS028520 (gene) Bitter gourd (TR) v1

Overview


Name	MS028520
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Gemini_AL1 domain-containing protein
Location	scaffold29: 182614 .. 184229 (+)
RNA-Seq Expression	MS028520
Synteny	MS028520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGGGGTATGCCTCCAAGCATACTGCCACTAAGAAGATAAGAGAGTGCTTTACCGAGTGGGAGGGCAGAGCACTCGATGTGAAATTTCACAAGGCCTGGGCTCCCATATGGTTGTATCTCATCAAAGAAGATAAGGAGCTGCTTGTCTGGGGGGAATACACATTAGAAGAAATAATAGAAATTGTAGACACTAGGAAAAAGCGCAAGAAGTCTCAGAAGAGTCAGCCAGAGCAAGTCATAGACAAGCTTCTCAAATGTCACGATTGGTACCAAATCTATAAGGATCCGGTCTTAAGGAAGCTTGCCGTGCTGTCCTATGAGAGCATTCGGAATCTATACGAGGATCCGCAGGTAGTTCGAGATATGCAAACCACTTTGGGAGAGATATTTCTATATTCTTTTTAGAGACATGGACAACCGGAGGAGTATGAGTTCGAAGAGCTAGAAGAGATCGATATTCACTCACTTATTTATAAAAATCTTCCGCCCCAGCCCAACCTAACTATTAAATAAAATGAAAGCACTGTGATTATGACATTTTGTTTTGGTCTTGACGTGCTTTGAAAAACATAGAGATATGATTTGCACTAGAACACTTACGATAGACCCACCGGGAACACATTCACTACTGGGCATTGACATCTTAATGCGTTGCAATCTGGACATTGATCGATCTTTATGCTTCCCAGCAGCTATACAATCCGAATCGGCTACCACTATAAATAAAGACCGCTCGAGTTCTTGAGACCGGGGAGGGGCACCCCGAGTGCTGGGCCAATTTCTGTGCCGGTTGGAGACCAGGTTCGAGATGCATATCGTCGAAAGAGAGCCATCACCTCGCCTCCTTTTCAATAGTAAATTCGAGAGCCAAATCCAATTAAGAAGCTGTTGATCTTGATCCAATTCACGATGCATGGGGCGAAATGCTGGTTGAAGCCCCCGAATGGGAACCTATCGAACGGGAATTAGTAGTAGTGCTGCTTGCTAACAATCTCTTTTGGAGGACAGCGGACGTCAGAAATTAATGTGAATTATGAATCTTCTTCGATTTTTGGATAACAACAATAAAGTGGGAAAACGATTTCAAAAGATGCTTTCGAAGTGAAAGTGAATTATATCAGATGAACGCTACTCTTCAAAAGAAATGGCGTGATTTGCCTACCTATATTCATAGCATGACGAACAGGAGGATTAAAGATTCTCGAAGGATGATATTGAAATCTTACTAGAAAAAGAAAGACGGAAAAAAAAATTTAATTTTGCAGTGAAAGTTGCGGATCTCTTCGCCCCCCTCTCCCGACTCAGTCACATGCAACCAGGCTTGAAACCCGGCCCACTCTCCCTTCTGTGCCCCCAGACCAAAAAAAAGTATGGTCTTTCTGAGAAGAAAGAAGAGCATATCTACCTTGAAGACCTTCTGGAAAGTCGCCTATGGAAAGAGCATACCCAACCAATATGAGCCTGTCCGAGACTTGCCATTCCCATGGAAGAGAGTTTCCCTGCGTATTGATTCATTACCGACTGAACGGGAAATGCTTGCTTCTATTCTTTCTCTCCGAGCGATGAACCGTGGTTGTCTAGCTGTACGGAATCCCTGGGGAGTGAAGGGATAG

mRNA sequence

ATGCGGGGGTATGCCTCCAAGCATACTGCCACTAAGAAGATAAGAGAGTGCTTTACCGAGTGGGAGGGCAGAGCACTCGATGTGAAATTTCACAAGGCCTGGGCTCCCATATGGTTGTATCTCATCAAAGAAGATAAGGAGCTGCTTGTCTGGGGGGAATACACATTAGAAGAAATAATAGAAATTGTAGACACTAGGAAAAAGCGCAAGAAGTCTCAGAAGAGTCAGCCAGAGCAAGTCATAGACAAGCTTCTCAAATGTCACGATTGGTACCAAATCTATAAGGATCCGGTCTTAAGGAAGCTTGCCGTGCTGTCCTATGAGAGCATTCGGAATCTATACGAGGATCCGCAGACCTTCTGGAAAGTCGCCTATGGAAAGAGCATACCCAACCAATATGAGCCTGTCCGAGACTTGCCATTCCCATGGAAGAGAGTTTCCCTGCGTATTGATTCATTACCGACTGAACGGGAAATGCTTGCTTCTATTCTTTCTCTCCGAGCGATGAACCGTGGTTGTCTAGCTGTACGGAATCCCTGGGGAGTGAAGGGATAG

Coding sequence (CDS)

ATGCGGGGGTATGCCTCCAAGCATACTGCCACTAAGAAGATAAGAGAGTGCTTTACCGAGTGGGAGGGCAGAGCACTCGATGTGAAATTTCACAAGGCCTGGGCTCCCATATGGTTGTATCTCATCAAAGAAGATAAGGAGCTGCTTGTCTGGGGGGAATACACATTAGAAGAAATAATAGAAATTGTAGACACTAGGAAAAAGCGCAAGAAGTCTCAGAAGAGTCAGCCAGAGCAAGTCATAGACAAGCTTCTCAAATGTCACGATTGGTACCAAATCTATAAGGATCCGGTCTTAAGGAAGCTTGCCGTGCTGTCCTATGAGAGCATTCGGAATCTATACGAGGATCCGCAGACCTTCTGGAAAGTCGCCTATGGAAAGAGCATACCCAACCAATATGAGCCTGTCCGAGACTTGCCATTCCCATGGAAGAGAGTTTCCCTGCGTATTGATTCATTACCGACTGAACGGGAAATGCTTGCTTCTATTCTTTCTCTCCGAGCGATGAACCGTGGTTGTCTAGCTGTACGGAATCCCTGGGGAGTGAAGGGATAG

Protein sequence

MRGYASKHTATKKIRECFTEWEGRALDVKFHKAWAPIWLYLIKEDKELLVWGEYTLEEIIEIVDTRKKRKKSQKSQPEQVIDKLLKCHDWYQIYKDPVLRKLAVLSYESIRNLYEDPQTFWKVAYGKSIPNQYEPVRDLPFPWKRVSLRIDSLPTEREMLASILSLRAMNRGCLAVRNPWGVKG

Homology

[Close]

BLAST of MS028520 vs. NCBI nr
Match: KAF3452224.1 (hypothetical protein FNV43_RR08322 [Rhamnella rubrinervis])

HSP 1 Score: 135.2 bits (339), Expect = 5.8e-28
Identity = 67/129 (51.94%), Postives = 90/129 (69.77%), Query Frame = 0


Query: 1   MRGYASKHTATKKIRECFTEWEGRALDVKFHKAWAPIWLYLIKEDKELLVWGEYTLEEII 60
           + G ASK+TATKKIR+   EWEGR LDV+FH+ W  I  YL+KED + LVWGEY+LEEI+
Sbjct: 69  LNGDASKNTATKKIRQVLHEWEGRTLDVRFHRNWTSICKYLLKEDTQPLVWGEYSLEEIL 128

Query: 61  EI-VDTRKKRKKS------------QKSQPEQVIDKLLKCHDWYQIYKDPVLRKLAVLSY 117
            I     +K KK+            + + PE +I+KL +C+ WY+IY DP+LRKL+V SY
Sbjct: 129 AIAAGASQKNKKATTSTPAEQLQIMEATPPEIIIEKLERCNHWYEIYNDPILRKLSVHSY 188

[Close]

BLAST of MS028520 vs. NCBI nr
Match: TYK02125.1 (hypothetical protein E5676_scaffold83326G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-17
Identity = 49/122 (40.16%), Postives = 73/122 (59.84%), Query Frame = 0


Query: 5   ASKHTATKKIRECFTEWEGRALDVKFHKAWAPIWLYLIKEDKELLVWGEYTLEEIIEIVD 64
           ASK+ A  KIRE   EWEGR  DV FHK W  +  Y+ K+DK   VWG++T+ +++    
Sbjct: 214 ASKNQAIAKIREALEEWEGRQCDVSFHKTWKSLCAYITKQDKAPYVWGKFTINQVLAEAK 273

Query: 65  TRKKRKKSQKSQPE-------QVIDKLLKCHDWYQIYKDPVLRKLAVLSYESIRNLYEDP 120
             +  K ++K  PE       ++  KL +C+D+  + KDP L  L +L Y++IRNL+ED 
Sbjct: 274 AARDHKSTRKITPETGEDKNQRIYAKLRQCNDFLALRKDPELADLLLLKYQTIRNLWEDE 333

[Close]

BLAST of MS028520 vs. NCBI nr
Match: KAA0036662.1 (hypothetical protein E6C27_scaffold43296G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-17
Identity = 49/122 (40.16%), Postives = 73/122 (59.84%), Query Frame = 0


Query: 5   ASKHTATKKIRECFTEWEGRALDVKFHKAWAPIWLYLIKEDKELLVWGEYTLEEIIEIVD 64
           ASK+ A  KIRE   EWEGR  DV FHK W  +  Y+ K+DK   VWG++T+ +++    
Sbjct: 38  ASKNQAIAKIREALEEWEGRQCDVSFHKTWKSLCAYITKQDKAPYVWGKFTINQVLAEAK 97

Query: 65  TRKKRKKSQKSQPE-------QVIDKLLKCHDWYQIYKDPVLRKLAVLSYESIRNLYEDP 120
             +  K ++K  PE       ++  KL +C+D+  + KDP L  L +L Y++IRNL+ED 
Sbjct: 98  AARDHKSTRKITPETGEDKNQRIYAKLRQCNDFLALRKDPELADLLLLKYQTIRNLWEDE 157

[Close]

BLAST of MS028520 vs. NCBI nr
Match: EEF27325.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-14
Identity = 44/112 (39.29%), Postives = 68/112 (60.71%), Query Frame = 0


Query: 5   ASKHTATKKIRECFTEWEGRALDVKFHKAWAPIWLYLIKEDKELLVWGEYTLEEIIEIVD 64
           AS++TA K IR    E++G   DVKFH+ W  +  Y+ KEDK  +VWGEY+L++I+EI  
Sbjct: 34  ASRNTAAKIIRRALPEFDGAQCDVKFHRGWGILCSYVTKEDKNPVVWGEYSLDQIMEIAA 93

Query: 65  TRKKRKKSQKSQPEQVIDKLLKCHDWYQIYKDPVLRKLAVLSYESIRNLYED 117
             + R  +  +        L KC+DWY++Y+   L+   +  Y +IRN++ED
Sbjct: 94  PVRSRINTLPT-------GLYKCNDWYEVYEQDSLKDRLMRGYNNIRNVFED 138

[Close]

BLAST of MS028520 vs. NCBI nr
Match: TXG46227.1 (hypothetical protein EZV62_028258 [Acer yangbiense])

HSP 1 Score: 89.0 bits (219), Expect = 4.7e-14
Identity = 44/102 (43.14%), Postives = 59/102 (57.84%), Query Frame = 0


Query: 6   SKHTATKKIRECFTEWEGRALDVKFHKAWAPIWLYLIKEDKELLVWGEYTLEEIIEIVDT 65
           +KH A K IR  F E++G   +V+F K W  +  YL KEDK  LVWGEYT E+I++I + 
Sbjct: 86  AKHNAAKIIRSIFPEFDGVQCEVRFPKGWGRLCAYLTKEDKSPLVWGEYTREQILDISEC 145

Query: 66  RKKRKKSQKSQPEQVIDKLLKCHDWYQIYKDPVLRKLAVLSY 108
            +  KK      + V+D L KC DW+ IY + VL      SY
Sbjct: 146 SRHHKKDTTVPNQVVLDNLSKCEDWFDIYSNEVLVNRLFRSY 187

[Close]

BLAST of MS028520 vs. ExPASy TrEMBL
Match: A0A5A7SZR2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43296G00060 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.8e-18
Identity = 49/122 (40.16%), Postives = 73/122 (59.84%), Query Frame = 0


Query: 5   ASKHTATKKIRECFTEWEGRALDVKFHKAWAPIWLYLIKEDKELLVWGEYTLEEIIEIVD 64
           ASK+ A  KIRE   EWEGR  DV FHK W  +  Y+ K+DK   VWG++T+ +++    
Sbjct: 38  ASKNQAIAKIREALEEWEGRQCDVSFHKTWKSLCAYITKQDKAPYVWGKFTINQVLAEAK 97

Query: 65  TRKKRKKSQKSQPE-------QVIDKLLKCHDWYQIYKDPVLRKLAVLSYESIRNLYEDP 120
             +  K ++K  PE       ++  KL +C+D+  + KDP L  L +L Y++IRNL+ED 
Sbjct: 98  AARDHKSTRKITPETGEDKNQRIYAKLRQCNDFLALRKDPELADLLLLKYQTIRNLWEDE 157

[Close]

BLAST of MS028520 vs. ExPASy TrEMBL
Match: A0A5D3BSH0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83326G00020 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.8e-18
Identity = 49/122 (40.16%), Postives = 73/122 (59.84%), Query Frame = 0


Query: 5   ASKHTATKKIRECFTEWEGRALDVKFHKAWAPIWLYLIKEDKELLVWGEYTLEEIIEIVD 64
           ASK+ A  KIRE   EWEGR  DV FHK W  +  Y+ K+DK   VWG++T+ +++    
Sbjct: 214 ASKNQAIAKIREALEEWEGRQCDVSFHKTWKSLCAYITKQDKAPYVWGKFTINQVLAEAK 273

Query: 65  TRKKRKKSQKSQPE-------QVIDKLLKCHDWYQIYKDPVLRKLAVLSYESIRNLYEDP 120
             +  K ++K  PE       ++  KL +C+D+  + KDP L  L +L Y++IRNL+ED 
Sbjct: 274 AARDHKSTRKITPETGEDKNQRIYAKLRQCNDFLALRKDPELADLLLLKYQTIRNLWEDE 333

[Close]

BLAST of MS028520 vs. ExPASy TrEMBL
Match: A0A7N0UNL0 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.1e-15
Identity = 42/113 (37.17%), Postives = 66/113 (58.41%), Query Frame = 0


Query: 5   ASKHTATKKIRECFTEWEGRALDVKFHKAWAPIWLYLIKEDKELLVWGEYTLEEIIEIVD 64
           ASK+   KKIR  F EW+GRA+ +  HK W  I  Y+ KED++ +VWGE+T ++I+ I +
Sbjct: 87  ASKNNLRKKIRSLFPEWKGRAIGISVHKGWGSICRYITKEDQKPIVWGEFTQQQILSIAE 146

Query: 65  TRKKRKKSQKSQPE-QVIDKLLKCHDWYQIYKDPVLRKLAVLSYESIRNLYED 117
             KK+K          ++ K+ +  DWYQ+Y+D +L    +     ++  YED
Sbjct: 147 AHKKKKAMNLEIGNLAILKKIEELEDWYQVYRDDILANRVLNHLPRMKEAYED 199

[Close]

BLAST of MS028520 vs. ExPASy TrEMBL
Match: B9T9Z5 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_2118790 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.0e-15
Identity = 44/112 (39.29%), Postives = 68/112 (60.71%), Query Frame = 0


Query: 5   ASKHTATKKIRECFTEWEGRALDVKFHKAWAPIWLYLIKEDKELLVWGEYTLEEIIEIVD 64
           AS++TA K IR    E++G   DVKFH+ W  +  Y+ KEDK  +VWGEY+L++I+EI  
Sbjct: 34  ASRNTAAKIIRRALPEFDGAQCDVKFHRGWGILCSYVTKEDKNPVVWGEYSLDQIMEIAA 93

Query: 65  TRKKRKKSQKSQPEQVIDKLLKCHDWYQIYKDPVLRKLAVLSYESIRNLYED 117
             + R  +  +        L KC+DWY++Y+   L+   +  Y +IRN++ED
Sbjct: 94  PVRSRINTLPT-------GLYKCNDWYEVYEQDSLKDRLMRGYNNIRNVFED 138

[Close]

BLAST of MS028520 vs. ExPASy TrEMBL
Match: A0A5C7GNV1 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027796 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.3e-14
Identity = 44/102 (43.14%), Postives = 59/102 (57.84%), Query Frame = 0


Query: 6   SKHTATKKIRECFTEWEGRALDVKFHKAWAPIWLYLIKEDKELLVWGEYTLEEIIEIVDT 65
           +KH A K IR  F E++G   +V+F K W  +  YL KEDK  LVWGEYT E+I++I + 
Sbjct: 86  AKHNAAKIIRSIFPEFDGVQCEVRFPKGWGRLCAYLTKEDKSPLVWGEYTREQILDISEC 145

Query: 66  RKKRKKSQKSQPEQVIDKLLKCHDWYQIYKDPVLRKLAVLSY 108
            +  KK      + V+D L KC DW+ IY + VL      SY
Sbjct: 146 SRHHKKDTTVPNQVVLDNLSKCEDWFDIYSNEVLVNRLFRSY 187

The following BLAST results are available for this feature:

BLAST of MS028520 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3452224.1	5.8e-28	51.94	hypothetical protein FNV43_RR08322 [Rhamnella rubrinervis]	[more]
TYK02125.1	1.2e-17	40.16	hypothetical protein E5676_scaffold83326G00020 [Cucumis melo var. makuwa]	[more]
KAA0036662.1	1.2e-17	40.16	hypothetical protein E6C27_scaffold43296G00060 [Cucumis melo var. makuwa]	[more]
EEF27325.1	1.2e-14	39.29	conserved hypothetical protein [Ricinus communis]	[more]
TXG46227.1	4.7e-14	43.14	hypothetical protein EZV62_028258 [Acer yangbiense]	[more]

BLAST of MS028520 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS028520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SZR2	5.8e-18	40.16	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BSH0	5.8e-18	40.16	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A7N0UNL0	2.1e-15	37.17	Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1	[more]
B9T9Z5	6.0e-15	39.29	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_2118790 PE=4 SV=1	[more]
A0A5C7GNV1	2.3e-14	43.14	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027796 PE=4 SV=1	[more]

BLAST of MS028520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS028520.1	MS028520.1	mRNA