MS028240 (gene) Bitter gourd (TR) v1

Overview
NameMS028240
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-binding protein HEXBP
Locationscaffold47: 938166 .. 938624 (+)
RNA-Seq ExpressionMS028240
SyntenyMS028240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGATCATCAAGGGGCCCATGCAATCCCTGCTCATATGGCCAAGCTGCTGGCAGTTCCTGCACACAACGTCCCGATAACCACCACCGCTGCCGCCACGCACACTGCCACCGCCACTGCCAATGCCCCGGTCTACCCGGTCACTGAGGATGTTGGATTTTGGACACTGTCTGGCCACATGCCCGGATACATTACACAAGTTGCAAATTGGGTCATTTGGACAATCGCGAGCAAGATGGCCTGTCTTCCTGCAATTGTTGCAGGCCTTCTCGTTAGTACAGTCAGCTGCTATATGACCCTGCTTATAGCAATTATTGCACAGCCTCAAGTCCCCCGGTGGCAGCGGAGGAGCGGTGCATTCCCTAGCCCGATGTCCTGCCTTACCACAGGTGTGGCAGATGCCTTCATTGGGACAGCTATTTGCCATGTGACCTGGTTCTCGACAATTCCAACATAG

mRNA sequence

ATGGCAGATCATCAAGGGGCCCATGCAATCCCTGCTCATATGGCCAAGCTGCTGGCAGTTCCTGCACACAACGTCCCGATAACCACCACCGCTGCCGCCACGCACACTGCCACCGCCACTGCCAATGCCCCGGTCTACCCGGTCACTGAGGATGTTGGATTTTGGACACTGTCTGGCCACATGCCCGGATACATTACACAAGTTGCAAATTGGGTCATTTGGACAATCGCGAGCAAGATGGCCTGTCTTCCTGCAATTGTTGCAGGCCTTCTCGTTAGTACAGTCAGCTGCTATATGACCCTGCTTATAGCAATTATTGCACAGCCTCAAGTCCCCCGGTGGCAGCGGAGGAGCGGTGCATTCCCTAGCCCGATGTCCTGCCTTACCACAGGTGTGGCAGATGCCTTCATTGGGACAGCTATTTGCCATGTGACCTGGTTCTCGACAATTCCAACATAG

Coding sequence (CDS)

ATGGCAGATCATCAAGGGGCCCATGCAATCCCTGCTCATATGGCCAAGCTGCTGGCAGTTCCTGCACACAACGTCCCGATAACCACCACCGCTGCCGCCACGCACACTGCCACCGCCACTGCCAATGCCCCGGTCTACCCGGTCACTGAGGATGTTGGATTTTGGACACTGTCTGGCCACATGCCCGGATACATTACACAAGTTGCAAATTGGGTCATTTGGACAATCGCGAGCAAGATGGCCTGTCTTCCTGCAATTGTTGCAGGCCTTCTCGTTAGTACAGTCAGCTGCTATATGACCCTGCTTATAGCAATTATTGCACAGCCTCAAGTCCCCCGGTGGCAGCGGAGGAGCGGTGCATTCCCTAGCCCGATGTCCTGCCTTACCACAGGTGTGGCAGATGCCTTCATTGGGACAGCTATTTGCCATGTGACCTGGTTCTCGACAATTCCAACATAG

Protein sequence

MADHQGAHAIPAHMAKLLAVPAHNVPITTTAAATHTATATANAPVYPVTEDVGFWTLSGHMPGYITQVANWVIWTIASKMACLPAIVAGLLVSTVSCYMTLLIAIIAQPQVPRWQRRSGAFPSPMSCLTTGVADAFIGTAICHVTWFSTIPT
Homology
BLAST of MS028240 vs. NCBI nr
Match: CAN63952.1 (hypothetical protein VITISV_020990 [Vitis vinifera])

HSP 1 Score: 146.4 bits (368), Expect = 2.1e-31
Identity = 77/148 (52.03%), Postives = 97/148 (65.54%), Query Frame = 0

Query: 5   QGAHAIPAHMAKLLAVPAHNVPITTTAAATHTATATANAPVYPVTEDVGFWTLSGHMPGY 64
           QG HAIPAHM  L+A PA N+  T+ A            P  P+++++G W L  HMP Y
Sbjct: 12  QGNHAIPAHMTHLVAAPADNISKTSVA-----------TPTTPLSKNLGLWALPSHMPSY 71

Query: 65  ITQVANWVIWTIASKMACLPAIVAGLLVSTVSCYMTLLIAIIAQPQVPRWQRRSGAFPSP 124
           + QVANW I T+   +A LPA++A L++ TVSC MTLL+A+IAQPQVPRWQ RS A    
Sbjct: 72  VAQVANWFILTVTCYVASLPAVLACLIICTVSCNMTLLVAVIAQPQVPRWQPRSWAVSGT 131

Query: 125 MSCLTTGVADAFIGTAICHVTWFSTIPT 153
           M+ L   +AD+ IGT   HVTWFSTIPT
Sbjct: 132 MTSLIARMADSLIGTVAGHVTWFSTIPT 148

BLAST of MS028240 vs. NCBI nr
Match: ACN35989.1 (unknown [Zea mays])

HSP 1 Score: 58.5 bits (140), Expect = 5.7e-05
Identity = 50/142 (35.21%), Postives = 66/142 (46.48%), Query Frame = 0

Query: 14  MAKLLAVPAHNVPITTTAAATHTATATANA----PVYPVTEDVGFWTLSGHMPGYITQVA 73
           MA L+A PA +V   TT    +T   +AN        P+ + +    L+G +   I QVA
Sbjct: 1   MANLVAGPADHVTEATTEGNANTTEGSANTMEGRRPTPLAQCIRLGALTGQVASNIAQVA 60

Query: 74  NWVIWTIASKMACLPAIVAGLLVSTVSCYMTLLIAIIAQPQVPRWQRRSGAFPSPMSCLT 133
           N +I  I   MA LPAIVAGLL+      M  L+A+ A+         S A    MS L 
Sbjct: 61  NRIIGAITGNMATLPAIVAGLLIGAFLTKMPWLVAVAAKDHFSWRHWWSSAVSCNMSGLA 120

Query: 134 TGVADAFIGTAICHVTWFSTIP 152
           T  A  FI  A+ HV     +P
Sbjct: 121 TVTAYPFIWAAVSHVARLFAVP 142

BLAST of MS028240 vs. ExPASy TrEMBL
Match: A5BX74 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_020990 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.0e-31
Identity = 77/148 (52.03%), Postives = 97/148 (65.54%), Query Frame = 0

Query: 5   QGAHAIPAHMAKLLAVPAHNVPITTTAAATHTATATANAPVYPVTEDVGFWTLSGHMPGY 64
           QG HAIPAHM  L+A PA N+  T+ A            P  P+++++G W L  HMP Y
Sbjct: 12  QGNHAIPAHMTHLVAAPADNISKTSVA-----------TPTTPLSKNLGLWALPSHMPSY 71

Query: 65  ITQVANWVIWTIASKMACLPAIVAGLLVSTVSCYMTLLIAIIAQPQVPRWQRRSGAFPSP 124
           + QVANW I T+   +A LPA++A L++ TVSC MTLL+A+IAQPQVPRWQ RS A    
Sbjct: 72  VAQVANWFILTVTCYVASLPAVLACLIICTVSCNMTLLVAVIAQPQVPRWQPRSWAVSGT 131

Query: 125 MSCLTTGVADAFIGTAICHVTWFSTIPT 153
           M+ L   +AD+ IGT   HVTWFSTIPT
Sbjct: 132 MTSLIARMADSLIGTVAGHVTWFSTIPT 148

BLAST of MS028240 vs. ExPASy TrEMBL
Match: A0A0A9A5G9 (DNA-binding protein HEXBP OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-09
Identity = 54/156 (34.62%), Postives = 79/156 (50.64%), Query Frame = 0

Query: 1   MADHQGA-HAIPAHMAKLLAVPAHNVPITTTAAATHTA----TATANAPVYPVTEDVGFW 60
           +ADH+GA HA+ AHMA L+A PA ++ + T   +T T     TAT      P+ + + F 
Sbjct: 45  VADHEGASHAVTAHMANLVAGPADHITVATMEGSTTTTEGSNTATEGRRSTPLIDCIRFG 104

Query: 61  TLSGHMPGYITQVANWVIWTIASKMACLPAIVAGLLVSTVSCYMTLLIAIIAQPQVPRWQ 120
            L+G M   I Q+AN +I  I   MA LP +VAGLL+      +   +A+ A+    R  
Sbjct: 105 ALTGQMASNIAQIANRIIGAITGNMATLPTVVAGLLIGAFLTKVPWFVAVAAENHFSRQH 164

Query: 121 RRSGAFPSPMSCLTTGVADAFIGTAICHVTWFSTIP 152
            RS A    ++ + T V   F+   I   T  S +P
Sbjct: 165 WRSSAVSCNVARIATVVTYPFVPADIFGRTLSSNVP 200

BLAST of MS028240 vs. ExPASy TrEMBL
Match: C0PLC3 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.7e-05
Identity = 50/142 (35.21%), Postives = 66/142 (46.48%), Query Frame = 0

Query: 14  MAKLLAVPAHNVPITTTAAATHTATATANA----PVYPVTEDVGFWTLSGHMPGYITQVA 73
           MA L+A PA +V   TT    +T   +AN        P+ + +    L+G +   I QVA
Sbjct: 1   MANLVAGPADHVTEATTEGNANTTEGSANTMEGRRPTPLAQCIRLGALTGQVASNIAQVA 60

Query: 74  NWVIWTIASKMACLPAIVAGLLVSTVSCYMTLLIAIIAQPQVPRWQRRSGAFPSPMSCLT 133
           N +I  I   MA LPAIVAGLL+      M  L+A+ A+         S A    MS L 
Sbjct: 61  NRIIGAITGNMATLPAIVAGLLIGAFLTKMPWLVAVAAKDHFSWRHWWSSAVSCNMSGLA 120

Query: 134 TGVADAFIGTAICHVTWFSTIP 152
           T  A  FI  A+ HV     +P
Sbjct: 121 TVTAYPFIWAAVSHVARLFAVP 142

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CAN63952.12.1e-3152.03hypothetical protein VITISV_020990 [Vitis vinifera][more]
ACN35989.15.7e-0535.21unknown [Zea mays][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A5BX741.0e-3152.03Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_020990 PE=4 SV=1[more]
A0A0A9A5G91.4e-0934.62DNA-binding protein HEXBP OS=Arundo donax OX=35708 PE=4 SV=1[more]
C0PLC32.7e-0535.21Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS028240.1MS028240.1mRNA