MS028179 (gene) Bitter gourd (TR) v1

Overview


Name	MS028179
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Phospholipid scramblase
Location	scaffold348: 147031 .. 147342 (-)
RNA-Seq Expression	MS028179
Synteny	MS028179

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGGAAAATCTCGTCGTCGGCGCCGGTGTCCGCAACTTGGGGGAGACCGGCGGCGGCCCAATACTCCATTCCGGCGTCTGGGGCGCCTGCGAGAAACCCCAACTTCAAGTGCTGCGATGGGGCGCCTGAGGGGCTTTGCAGCGCATGCGTGTGCTGCGTGTGCTGCCCACTGGCTCTGGTGTGGGGATGCCTCAGGCTGCCATGGAGGGCCGCGAAGCAAGCCAAGAAATGGGTCGGCGGCGGATCTGAAGAGAAGCCGTTGGCGTATTCTTCCTTTTCTGACATTGATTCCAGCGGTGAAGTTTAG

mRNA sequence

ATGGAGAGGAAAATCTCGTCGTCGGCGCCGGTGTCCGCAACTTGGGGGAGACCGGCGGCGGCCCAATACTCCATTCCGGCGTCTGGGGCGCCTGCGAGAAACCCCAACTTCAAGTGCTGCGATGGGGCGCCTGAGGGGCTTTGCAGCGCATGCGTGTGCTGCGTGTGCTGCCCACTGGCTCTGGTGTGGGGATGCCTCAGGCTGCCATGGAGGGCCGCGAAGCAAGCCAAGAAATGGGTCGGCGGCGGATCTGAAGAGAAGCCGTTGGCGTATTCTTCCTTTTCTGACATTGATTCCAGCGGTGAAGTTTAG

Coding sequence (CDS)

ATGGAGAGGAAAATCTCGTCGTCGGCGCCGGTGTCCGCAACTTGGGGGAGACCGGCGGCGGCCCAATACTCCATTCCGGCGTCTGGGGCGCCTGCGAGAAACCCCAACTTCAAGTGCTGCGATGGGGCGCCTGAGGGGCTTTGCAGCGCATGCGTGTGCTGCGTGTGCTGCCCACTGGCTCTGGTGTGGGGATGCCTCAGGCTGCCATGGAGGGCCGCGAAGCAAGCCAAGAAATGGGTCGGCGGCGGATCTGAAGAGAAGCCGTTGGCGTATTCTTCCTTTTCTGACATTGATTCCAGCGGTGAAGTTTAG

Protein sequence

MERKISSSAPVSATWGRPAAAQYSIPASGAPARNPNFKCCDGAPEGLCSACVCCVCCPLALVWGCLRLPWRAAKQAKKWVGGGSEEKPLAYSSFSDIDSSGEV

Homology

[Close]

BLAST of MS028179 vs. NCBI nr
Match: KAF3438596.1 (hypothetical protein FNV43_RR21359 [Rhamnella rubrinervis])

HSP 1 Score: 86.3 bits (212), Expect = 1.7e-13
Identity = 52/107 (48.60%), Postives = 62/107 (57.94%), Query Frame = 0


Query: 1   MERK--ISSSAPVSATWGRPAAAQYSIPASGAPARNPNFKCCDGAPEGLCSACVCCVCCP 60
           MERK  +   A V +  GRP +            RNPN  CCD   E LCSAC+ C+CCP
Sbjct: 1   MERKSVLEQKAKVKSHEGRPPSTSCDSKMISCAKRNPN--CCDKVTEFLCSACLLCICCP 60

Query: 61  LALVWGCLRLP----WRAAKQAKKWVGGGSEEKPL--AYSSFSDIDS 100
           L +VW C+++P    WRAAK AK W    S EK +  AYSSFSDIDS
Sbjct: 61  LCIVWCCIKVPCKIGWRAAKHAKNWSCCASSEKKIYAAYSSFSDIDS 105

[Close]

BLAST of MS028179 vs. NCBI nr
Match: KAG6672932.1 (hypothetical protein I3842_16G083700 [Carya illinoinensis])

HSP 1 Score: 84.3 bits (207), Expect = 6.5e-13
Identity = 42/72 (58.33%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 33  RNPNFKCCDGAPEGLCSACVCCVCCPLALVWGCLRLP----WRAAKQAKKWVGGGSEEKP 92
           R+ + +CCD   E LCSAC+ CVCCPLA+VWGC++LP    W AAK+AK W   GS+ + 
Sbjct: 39  RHQDSQCCDKTTECLCSACLLCVCCPLAVVWGCVKLPCKIGWHAAKRAKHWACCGSDTRD 98

Query: 93  LA-YSSFSDIDS 100
            A YSSFSDIDS
Sbjct: 99  FASYSSFSDIDS 110

[Close]

BLAST of MS028179 vs. NCBI nr
Match: XP_042964072.1 (uncharacterized protein LOC122298409 [Carya illinoinensis] >KAG2664592.1 hypothetical protein I3760_16G089100 [Carya illinoinensis] >KAG6625341.1 hypothetical protein CIPAW_16G089000 [Carya illinoinensis] >KAG7942146.1 hypothetical protein I3843_16G085000 [Carya illinoinensis])

HSP 1 Score: 84.3 bits (207), Expect = 6.5e-13
Identity = 42/72 (58.33%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 33  RNPNFKCCDGAPEGLCSACVCCVCCPLALVWGCLRLP----WRAAKQAKKWVGGGSEEKP 92
           R+ + +CCD   E LCSAC+ CVCCPLA+VWGC++LP    W AAK+AK W   GS+ + 
Sbjct: 39  RHQDSQCCDKTTECLCSACLLCVCCPLAVVWGCVKLPCKIGWHAAKRAKHWACCGSDTRD 98

Query: 93  LA-YSSFSDIDS 100
            A YSSFSDIDS
Sbjct: 99  FASYSSFSDIDS 110

[Close]

BLAST of MS028179 vs. NCBI nr
Match: XP_030949871.1 (uncharacterized protein LOC115973770 [Quercus lobata])

HSP 1 Score: 81.6 bits (200), Expect = 4.2e-12
Identity = 43/67 (64.18%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 38  KCCDGAPEGLCSACVCCVCCPLALVWGCLRLP----WRAAKQAKKWVGGGSEEKPLA-YS 97
           +CCD   E LCSAC+ CVCCPLA+VWGC +LP    WRAAK AKKW   GS  K  A YS
Sbjct: 58  QCCDKTTECLCSACLLCVCCPLAVVWGCFKLPCQIGWRAAKHAKKWTCCGSGMKGFAEYS 117

Query: 98  SFSDIDS 100
           SFSD DS
Sbjct: 118 SFSDNDS 124

[Close]

BLAST of MS028179 vs. NCBI nr
Match: XP_023927456.1 (uncharacterized protein LOC112038835 isoform X1 [Quercus suber] >XP_023927457.1 uncharacterized protein LOC112038835 isoform X2 [Quercus suber])

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-11
Identity = 42/67 (62.69%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 38  KCCDGAPEGLCSACVCCVCCPLALVWGCLRLP----WRAAKQAKKWVGGGSEEKPLA-YS 97
           +CCD   E LCSAC+ CVCCPLA+VWGC +LP    WRAAK AK+W   GS  K  A YS
Sbjct: 45  QCCDKTTECLCSACLLCVCCPLAVVWGCFKLPCKIGWRAAKHAKQWTCCGSGMKGFAEYS 104

Query: 98  SFSDIDS 100
           SFSD DS
Sbjct: 105 SFSDNDS 111

[Close]

BLAST of MS028179 vs. ExPASy TrEMBL
Match: A0A2N9I0D5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45351 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 9.2e-13
Identity = 45/82 (54.88%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 24  SIPASGAPARNPNFKCCDGAPEGLCSACVCCVCCPLALVWGCLRLP----WRAAKQAKKW 83
           S   S   +     KCCD   E LCSACV CVCCP+A++WGC++LP    WRAAK AK+W
Sbjct: 33  SCSCSSCSSSTRGSKCCDKTTECLCSACVLCVCCPVAVLWGCIKLPCKLGWRAAKHAKRW 92

Query: 84  VGGGSEEKPLA-YSSFSDIDSS 101
              GSE K  A YSSFSD D S
Sbjct: 93  ACCGSEMKGFADYSSFSDNDIS 114

[Close]

BLAST of MS028179 vs. ExPASy TrEMBL
Match: A0A7N2MNY9 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.0e-12
Identity = 43/67 (64.18%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 38  KCCDGAPEGLCSACVCCVCCPLALVWGCLRLP----WRAAKQAKKWVGGGSEEKPLA-YS 97
           +CCD   E LCSAC+ CVCCPLA+VWGC +LP    WRAAK AKKW   GS  K  A YS
Sbjct: 58  QCCDKTTECLCSACLLCVCCPLAVVWGCFKLPCQIGWRAAKHAKKWTCCGSGMKGFAEYS 117

Query: 98  SFSDIDS 100
           SFSD DS
Sbjct: 118 SFSDNDS 124

[Close]

BLAST of MS028179 vs. ExPASy TrEMBL
Match: A0A6A1VIT7 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR5G001029 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.8e-12
Identity = 42/67 (62.69%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 38  KCCDGAPEGLCSACVCCVCCPLALVWGCLRLP----WRAAKQAKKWVGGGSEEKPL-AYS 97
           KCC    E LCSAC+ CVCCPL++VW C+RLP    WRAAK AK+WV  GSE +   AYS
Sbjct: 51  KCCHKTTECLCSACLLCVCCPLSVVWVCVRLPCKLGWRAAKHAKRWVCCGSEMRDFAAYS 110

Query: 98  SFSDIDS 100
           SFSD DS
Sbjct: 111 SFSDDDS 117

[Close]

BLAST of MS028179 vs. ExPASy TrEMBL
Match: A0A2P5AQX8 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308600 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.3e-10
Identity = 49/104 (47.12%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 2   ERK--ISSSAPVSATWGRPAAAQYSIPASGAPARNPNFKCCDGAPEGLCSACVCCVCCPL 61
           ERK  I     V    GRP  ++   P+S +P  +    CC  A E LCSAC+ CVCCPL
Sbjct: 16  ERKSVIEEKTEVKHLEGRPNTSKEGKPSSSSPESS---NCCCKATEFLCSACLLCVCCPL 75

Query: 62  ALVWGCLRLP----WRAAKQAKKWVGGGSEEKPL-AYSSFSDID 99
           A++W C++LP    W+AAKQA      GSE++ + AYSSFSDID
Sbjct: 76  AILWCCIKLPCKLGWQAAKQAIHRACCGSEKRIVAAYSSFSDID 116

[Close]

BLAST of MS028179 vs. ExPASy TrEMBL
Match: A0A2P5FVU0 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_021900 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.3e-10
Identity = 44/89 (49.44%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 16  GRPAAAQYSIPASGAPARNPNFKCCDGAPEGLCSACVCCVCCPLALVWGCLRLP----WR 75
           GRP  ++    +S +P  +    CC  A E LCSAC+ CVCCPLA++W C++LP    W+
Sbjct: 32  GRPNTSKEGKTSSSSPESS---NCCCKATEFLCSACLLCVCCPLAILWCCIKLPCKLGWQ 91

Query: 76  AAKQAKKWVGGGSEEKPL-AYSSFSDIDS 100
           AAKQA      GSE + + AYSSFSDIDS
Sbjct: 92  AAKQASHRACCGSETRIVAAYSSFSDIDS 117

[Close]

BLAST of MS028179 vs. TAIR 10
Match: AT1G48745.1 (unknown protein; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 4.5e-04
Identity = 27/63 (42.86%), Postives = 35/63 (55.56%), Query Frame = 0


Query: 49  SACVCCVCCPLALVWGCLRLP----WRAAKQAKKWVGGGS------EEKPLA--YSSFSD 100
           + C  CV CPL ++W C++ P    WRA   AK+ + G S        + LA  YSSFSD
Sbjct: 48  NVCCLCVYCPLCVLWCCIKQPCTIGWRAILNAKRRLSGCSGCGRSFSRRVLAADYSSFSD 107

The following BLAST results are available for this feature:

BLAST of MS028179 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3438596.1	1.7e-13	48.60	hypothetical protein FNV43_RR21359 [Rhamnella rubrinervis]	[more]
KAG6672932.1	6.5e-13	58.33	hypothetical protein I3842_16G083700 [Carya illinoinensis]	[more]
XP_042964072.1	6.5e-13	58.33	uncharacterized protein LOC122298409 [Carya illinoinensis] >KAG2664592.1 hypothe...	[more]
XP_030949871.1	4.2e-12	64.18	uncharacterized protein LOC115973770 [Quercus lobata]	[more]
XP_023927456.1	1.2e-11	62.69	uncharacterized protein LOC112038835 isoform X1 [Quercus suber] >XP_023927457.1 ...	[more]

BLAST of MS028179 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS028179 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9I0D5	9.2e-13	54.88	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45351 PE=4 SV=1	[more]
A0A7N2MNY9	2.0e-12	64.18	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A6A1VIT7	7.8e-12	62.69	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR5G001029 PE=4 SV=1	[more]
A0A2P5AQX8	3.3e-10	47.12	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308600 PE...	[more]
A0A2P5FVU0	7.3e-10	49.44	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_021900 PE=4 SV...	[more]

BLAST of MS028179 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48745.1	4.5e-04	42.86	unknown protein; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacter...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS028179.1	MS028179.1	mRNA