MS028027 (gene) Bitter gourd (TR) v1

Overview
NameMS028027
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold290: 1389430 .. 1390935 (-)
RNA-Seq ExpressionMS028027
SyntenyMS028027
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGTGAAGCAAAAAGCAATCAATCTCTTAGGTAATTTCTCCCCATCTCTAATATGTTTTAATCTCTTCATTTTATTTATTGTTTATTTAAGTTTACTTTAATTACCACTATGTATTTTTAGATTAGATTATGATACGATATGAATCTTCGTGCATAATTATGGATGTTAATTTAAAAATAGCTCAAAAGATAAGGTACCTATTATCATCTTAAAAGTATCGATTCTTCGCCTTAACAAGTGTTCCTATTCATAAGAAACAACATTATTTGATTCTTGTTTCCATGTAATAATTAGTAACTAATATAGATATTGAAAAAAGAAAAACTTTTTTTCCAAAACAAGAAGGGAGAGAGAAATTTCTAGGGGTTAAGAATGTTTTCCTTTAAATATTTCATGGTATTTGATTCCATGTCATTAAGTGTTTTTCAAAATGTTTTTATTAAAAGATTAAAACTTATTGGATAAAAAAAAAATCAAGGTATACCTTAAAATATTCTTAATATTTTTAAAATTAATAAAAAGAGGTCTAATAGTAAATTTGCCATGATTTAAATCAATATAGGCATACAAGTAGTGATTCTATATTATTTTATTTTATTTTTGAAATGATATATCCACAGTTACTTTTAAAATATATATATATTCTTTACGATAAGTGGGATAGAGATTCGAACTCATAACCAATTGATCTGTGAGAGTTACTAATTACTGCTGAGTTAAGTTCATTTAAAATATATATATTTAAATTTTCCAAAAAACCAATAATATATATTTTTGTTTTTTTGTTTTTTTGTTTCTATTTAGTGCGGCAGGAATTGGGAAGGCATATTGCAAATGTGGGGAAGGTTGGAAATGTGAGATCAAAATGACACAAGGCCCTGATGCTGGCAAGACCTTTGTTAATTGTGGCAACAACTGCATCTGTATAATGTAAGTCAAACCCGTCATTTCCTTAAATCATCGATAGACGACCTAAAAGTTTTAGTCGATAAGTTAGAATAAATTTGAGCATATAAGCTTGAATCAACCTGACCTCAAGAAAGGAAGTTATATATATTGCTTTTACCACTGAGTTAATGCTTTACCTATGAGCTTTAAATTCACAATTTCTCTAACTTTTGTCCAATAACTCAAATACATGTTTACATAAATTCAAAAATTTTAATCTCAAACTTCATAAATCCAGATTTACTACCACCATGAACCAAACGTCCCTTTAGTTTGATGAATTGAGATAAAGTTCAATCTCTTAAATGCATGATCAGTCGGATTATTTTAGATTTCGGGTTTTGGATTTAGGGTTTTCTCACACCATTGATTTTGAACAGAGAAGGGACAGCTGAAGGGGAAGTGAAGTTGCAGCAATTGGCAGAGGAGAGCAATTTGGAAGGGGCAACTTGTGAGTGTGGTGAAGGATGGAGCTGCACCATCTCCAAGATTGAAGCCACCAAGTCCTTTGCCAAGTGTGCTGGAGATTGTTCCTGCATCACTATTGCTTGA

mRNA sequence

ATGGAGAGTGAAGCAAAAAGCAATCAATCTCTTAGTGCGGCAGGAATTGGGAAGGCATATTGCAAATGTGGGGAAGGTTGGAAATGTGAGATCAAAATGACACAAGGCCCTGATGCTGGCAAGACCTTTGTTAATTGTGGCAACAACTGCATCTGTATAATAGAAGGGACAGCTGAAGGGGAAGTGAAGTTGCAGCAATTGGCAGAGGAGAGCAATTTGGAAGGGGCAACTTGTGAGTGTGGTGAAGGATGGAGCTGCACCATCTCCAAGATTGAAGCCACCAAGTCCTTTGCCAAGTGTGCTGGAGATTGTTCCTGCATCACTATTGCTTGA

Coding sequence (CDS)

ATGGAGAGTGAAGCAAAAAGCAATCAATCTCTTAGTGCGGCAGGAATTGGGAAGGCATATTGCAAATGTGGGGAAGGTTGGAAATGTGAGATCAAAATGACACAAGGCCCTGATGCTGGCAAGACCTTTGTTAATTGTGGCAACAACTGCATCTGTATAATAGAAGGGACAGCTGAAGGGGAAGTGAAGTTGCAGCAATTGGCAGAGGAGAGCAATTTGGAAGGGGCAACTTGTGAGTGTGGTGAAGGATGGAGCTGCACCATCTCCAAGATTGAAGCCACCAAGTCCTTTGCCAAGTGTGCTGGAGATTGTTCCTGCATCACTATTGCTTGA

Protein sequence

MESEAKSNQSLSAAGIGKAYCKCGEGWKCEIKMTQGPDAGKTFVNCGNNCICIIEGTAEGEVKLQQLAEESNLEGATCECGEGWSCTISKIEATKSFAKCAGDCSCITIA
Homology
BLAST of MS028027 vs. NCBI nr
Match: XP_022145399.1 (uncharacterized protein LOC111014857 [Momordica charantia])

HSP 1 Score: 231.9 bits (590), Expect = 2.7e-57
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0

Query: 1   MESEAKSNQSLSAAGIGKAYCKCGEGWKCEIKMTQGPDAGKTFVNCGNNCICIIEGTAEG 60
           MESEAKSNQSL AAGIGKAYCKCGEGWKCEIKMTQGPDAGKTFVNCGNNCICIIEGTAEG
Sbjct: 1   MESEAKSNQSLGAAGIGKAYCKCGEGWKCEIKMTQGPDAGKTFVNCGNNCICIIEGTAEG 60

Query: 61  EVKLQQLAEESNLEGATCECGEGWSCTISKIEATKSFAKCAGDCSCITIA 111
           EVKLQQLAEESNLEGATCECGEGWSCTISKIEATKSFAKCAGDCSCITIA
Sbjct: 61  EVKLQQLAEESNLEGATCECGEGWSCTISKIEATKSFAKCAGDCSCITIA 110

BLAST of MS028027 vs. NCBI nr
Match: XP_023540550.1 (uncharacterized protein LOC111800878 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 195.3 bits (495), Expect = 2.8e-46
Identity = 95/123 (77.24%), Postives = 101/123 (82.11%), Query Frame = 0

Query: 1   MESEAKSNQSLSAAG----------IGKAYCKCGEGWKCEIKMTQGPDAGKTFVNCGNNC 60
           MESEAK+ QSLS+ G          +GKAYCKCGEGWKCEIK TQGPDAGKTFVNCGNNC
Sbjct: 1   MESEAKAIQSLSSVGSEVEVGAKGVLGKAYCKCGEGWKCEIKRTQGPDAGKTFVNCGNNC 60

Query: 61  ICIIEGTAEGEVKLQQLAEESNLEGATCECGEGWSCTISKIEA---TKSFAKCAGDCSCI 111
           +CIIEGTAEG VKLQQLA E   EGA+CECGEGWSCTISKIE    TKSFAKCAGDCSCI
Sbjct: 61  VCIIEGTAEGAVKLQQLAGEGGFEGASCECGEGWSCTISKIEGPQDTKSFAKCAGDCSCI 120

BLAST of MS028027 vs. NCBI nr
Match: KAG6596727.1 (hypothetical protein SDJN03_09907, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194.5 bits (493), Expect = 4.8e-46
Identity = 94/118 (79.66%), Postives = 99/118 (83.90%), Query Frame = 0

Query: 1   MESEAKSNQSLSAAG-----IGKAYCKCGEGWKCEIKMTQGPDAGKTFVNCGNNCICIIE 60
           MESEAK+ QSLS        +GKAYCKCGEGWKCEIK TQGPDAGKTFVNCGNNC+CIIE
Sbjct: 1   MESEAKAIQSLSVGSGEKGVLGKAYCKCGEGWKCEIKRTQGPDAGKTFVNCGNNCVCIIE 60

Query: 61  GTAEGEVKLQQLAEESNLEGATCECGEGWSCTISKIEA---TKSFAKCAGDCSCITIA 111
           GTAEG VKLQQLA E   EGA+CECGEGWSCTISKIE    TKSFAKCAGDCSCIT+A
Sbjct: 61  GTAEGAVKLQQLAGEGGFEGASCECGEGWSCTISKIEGPQDTKSFAKCAGDCSCITVA 118

BLAST of MS028027 vs. NCBI nr
Match: XP_022924877.1 (uncharacterized protein LOC111432244 [Cucurbita moschata])

HSP 1 Score: 194.5 bits (493), Expect = 4.8e-46
Identity = 94/118 (79.66%), Postives = 99/118 (83.90%), Query Frame = 0

Query: 1   MESEAKSNQSLSAAG-----IGKAYCKCGEGWKCEIKMTQGPDAGKTFVNCGNNCICIIE 60
           MESEAK+ QSLS        +GKAYCKCGEGWKCEIK TQGPDAGKTFVNCGNNC+CIIE
Sbjct: 1   MESEAKAVQSLSVGSGEKGVLGKAYCKCGEGWKCEIKRTQGPDAGKTFVNCGNNCVCIIE 60

Query: 61  GTAEGEVKLQQLAEESNLEGATCECGEGWSCTISKIEA---TKSFAKCAGDCSCITIA 111
           GTAEG VKLQQLA E   EGA+CECGEGWSCTISKIE    TKSFAKCAGDCSCIT+A
Sbjct: 61  GTAEGAVKLQQLAGEGGFEGASCECGEGWSCTISKIEGPQDTKSFAKCAGDCSCITVA 118

BLAST of MS028027 vs. NCBI nr
Match: XP_023540551.1 (uncharacterized protein LOC111800878 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 193.0 bits (489), Expect = 1.4e-45
Identity = 94/122 (77.05%), Postives = 99/122 (81.15%), Query Frame = 0

Query: 1   MESEAKSNQSLSAAG---------IGKAYCKCGEGWKCEIKMTQGPDAGKTFVNCGNNCI 60
           MESEAK+ QSLS            +GKAYCKCGEGWKCEIK TQGPDAGKTFVNCGNNC+
Sbjct: 1   MESEAKAIQSLSVGSEVEVGAKGVLGKAYCKCGEGWKCEIKRTQGPDAGKTFVNCGNNCV 60

Query: 61  CIIEGTAEGEVKLQQLAEESNLEGATCECGEGWSCTISKIEA---TKSFAKCAGDCSCIT 111
           CIIEGTAEG VKLQQLA E   EGA+CECGEGWSCTISKIE    TKSFAKCAGDCSCIT
Sbjct: 61  CIIEGTAEGAVKLQQLAGEGGFEGASCECGEGWSCTISKIEGPQDTKSFAKCAGDCSCIT 120

BLAST of MS028027 vs. ExPASy TrEMBL
Match: A0A6J1CV46 (uncharacterized protein LOC111014857 OS=Momordica charantia OX=3673 GN=LOC111014857 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.3e-57
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0

Query: 1   MESEAKSNQSLSAAGIGKAYCKCGEGWKCEIKMTQGPDAGKTFVNCGNNCICIIEGTAEG 60
           MESEAKSNQSL AAGIGKAYCKCGEGWKCEIKMTQGPDAGKTFVNCGNNCICIIEGTAEG
Sbjct: 1   MESEAKSNQSLGAAGIGKAYCKCGEGWKCEIKMTQGPDAGKTFVNCGNNCICIIEGTAEG 60

Query: 61  EVKLQQLAEESNLEGATCECGEGWSCTISKIEATKSFAKCAGDCSCITIA 111
           EVKLQQLAEESNLEGATCECGEGWSCTISKIEATKSFAKCAGDCSCITIA
Sbjct: 61  EVKLQQLAEESNLEGATCECGEGWSCTISKIEATKSFAKCAGDCSCITIA 110

BLAST of MS028027 vs. ExPASy TrEMBL
Match: A0A6J1EA88 (uncharacterized protein LOC111432244 OS=Cucurbita moschata OX=3662 GN=LOC111432244 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.3e-46
Identity = 94/118 (79.66%), Postives = 99/118 (83.90%), Query Frame = 0

Query: 1   MESEAKSNQSLSAAG-----IGKAYCKCGEGWKCEIKMTQGPDAGKTFVNCGNNCICIIE 60
           MESEAK+ QSLS        +GKAYCKCGEGWKCEIK TQGPDAGKTFVNCGNNC+CIIE
Sbjct: 1   MESEAKAVQSLSVGSGEKGVLGKAYCKCGEGWKCEIKRTQGPDAGKTFVNCGNNCVCIIE 60

Query: 61  GTAEGEVKLQQLAEESNLEGATCECGEGWSCTISKIEA---TKSFAKCAGDCSCITIA 111
           GTAEG VKLQQLA E   EGA+CECGEGWSCTISKIE    TKSFAKCAGDCSCIT+A
Sbjct: 61  GTAEGAVKLQQLAGEGGFEGASCECGEGWSCTISKIEGPQDTKSFAKCAGDCSCITVA 118

BLAST of MS028027 vs. ExPASy TrEMBL
Match: A0A6J1KZQ8 (uncharacterized protein LOC111498543 OS=Cucurbita maxima OX=3661 GN=LOC111498543 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.2e-44
Identity = 91/118 (77.12%), Postives = 96/118 (81.36%), Query Frame = 0

Query: 1   MESEAKSNQSLSAAG-----IGKAYCKCGEGWKCEIKMTQGPDAGKTFVNCGNNCICIIE 60
           MESEAK  QSLS        +GKAYCKCGEGWKCEIK TQGPDAGKTFVNCGNNC+CIIE
Sbjct: 1   MESEAKVIQSLSVGSGEKGVLGKAYCKCGEGWKCEIKRTQGPDAGKTFVNCGNNCVCIIE 60

Query: 61  GTAEGEVKLQQLAEESNLEGATCECGEGWSCTISKIEA---TKSFAKCAGDCSCITIA 111
           GTAEG VKLQQLA E   EGA+CECGEGWSC+ISKIE     K FAKCAGDCSCIT+A
Sbjct: 61  GTAEGAVKLQQLAGEGGFEGASCECGEGWSCSISKIEGPQDAKPFAKCAGDCSCITVA 118

BLAST of MS028027 vs. ExPASy TrEMBL
Match: A0A6J5X755 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS30938 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 9.5e-24
Identity = 60/122 (49.18%), Postives = 81/122 (66.39%), Query Frame = 0

Query: 1   MESEAKSNQ---SLSAAG----IGKAYCKCGEGWKCEIKMTQGPDAGKTFVNCGNNCICI 60
           ME+++   Q   S++AAG    I KA+C+CGEGWKC I  T+GPDAGK F NCG+NC C+
Sbjct: 1   MEAQSSGEQSVRSVAAAGGNSSISKAFCRCGEGWKCVITRTEGPDAGKAFFNCGDNCTCV 60

Query: 61  I--EGTAEGEVKLQQLAEESNLEGATCECGEGWSCTISKIE---ATKSFAKCAGDCSCIT 111
           I  +GT   +V  Q++ E+     A CECGEGW C ISK+E   A K F++C+  C+C+T
Sbjct: 61  IYADGTVTNDVVPQEV-EKVGASEAYCECGEGWKCVISKVEGPDAGKGFSECSNGCTCVT 120

BLAST of MS028027 vs. ExPASy TrEMBL
Match: A0A251P3A8 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G034700 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.1e-23
Identity = 59/122 (48.36%), Postives = 81/122 (66.39%), Query Frame = 0

Query: 1   MESEAKSNQ---SLSAAG----IGKAYCKCGEGWKCEIKMTQGPDAGKTFVNCGNNCICI 60
           ME+++   Q   S++AAG    I KA+C+CGEGWKC I  T+GPDAGK F NCG+NC C+
Sbjct: 1   METQSSGEQSVRSVAAAGGNSSISKAFCRCGEGWKCVITRTEGPDAGKAFFNCGDNCTCV 60

Query: 61  I--EGTAEGEVKLQQLAEESNLEGATCECGEGWSCTISKIE---ATKSFAKCAGDCSCIT 111
           I  +GT   +V  Q++ ++     A CECGEGW C ISK+E   A K F++C+  C+C+T
Sbjct: 61  IYADGTVTNDVVPQEV-DKVGASEAYCECGEGWKCVISKVEGPDAGKGFSECSNGCTCVT 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022145399.12.7e-5799.09uncharacterized protein LOC111014857 [Momordica charantia][more]
XP_023540550.12.8e-4677.24uncharacterized protein LOC111800878 isoform X1 [Cucurbita pepo subsp. pepo][more]
KAG6596727.14.8e-4679.66hypothetical protein SDJN03_09907, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022924877.14.8e-4679.66uncharacterized protein LOC111432244 [Cucurbita moschata][more]
XP_023540551.11.4e-4577.05uncharacterized protein LOC111800878 isoform X2 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CV461.3e-5799.09uncharacterized protein LOC111014857 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A6J1EA882.3e-4679.66uncharacterized protein LOC111432244 OS=Cucurbita moschata OX=3662 GN=LOC1114322... [more]
A0A6J1KZQ82.2e-4477.12uncharacterized protein LOC111498543 OS=Cucurbita maxima OX=3661 GN=LOC111498543... [more]
A0A6J5X7559.5e-2449.18Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS30938 PE=... [more]
A0A251P3A82.1e-2348.36Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G034700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS028027.1MS028027.1mRNA