MS028020 (gene) Bitter gourd (TR) v1

Overview


Name	MS028020
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	la-related protein 1B-like
Location	scaffold290: 492338 .. 493941 (+)
RNA-Seq Expression	MS028020
Synteny	MS028020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACGAGGAAGTTCGAGCAATGGATCAGATGATTATGAGATTAAGGTACAAAATATATTTTTATATTTATATAGTTTATATTAATAAATAAGAAGTTCCTTTGATCTTAGAAAATGTGGTATTATTTTGAAATTATTTATGAAAAAATATACGCCTAAATTTTGGAGGGGCGATTGTTCATAGGGTTTTTAATTTTTGTTTGTTGCTTTTAGGGTAAATTTTGAATGATATATTGAATTAAAATAAATATTTGGTATAATAAATTAAGAATATTTATTTTATATTCGAAGAGATCACTAATTTCATATATTTACATATATTTGTGACGATTATTTTTCAGGAAAAAATTAGGAATGGTGGGTTTGAACACTATCATATTGACAATCAAATATGGTATTCTCATTCCAATGGCTATGGTTGGGAATTTTGCACCCCCATCGACCCTCCACCTTATTCAGGTATCGATCTCTCGACCATAATTGAAACTTATTCCAAATTCTACTCGTTTCAAAACAAGTTAATAATCTCTCGACCATAATTGAAACTTATTCCAAATTCTACTCGTTTCAAAACAAGTTAATAATCTCTCGACCATAATTGAAACTTATTCCAAATTCTACTCGTTTCAAAACAAGTTCTTTTTCTCGTTCTTTATATATTAGAATGATTAATTACTTTTGCTTTCTTTGGCATTGTTAGGATACGTACTTTCGAATCCTCAAAATCCCATGGCATATTATATTTCTCCAAATTTTGGACCATCTAACTACATGTATAATTCTTGTTCACCGTCGCCGCCGCCGCCACCGCCCTCGCCGCCAATATATCATCCTTTTCCTACTAAAGAGCTATATTGGAAAATAATAAATCAAGTCAATTATTATTTCAGGTACTACTCTTATCAATCTTCAGTTTTTTTTTTTAATTATTATTTTAAGTAAATTATATTATAAATATAAATGATTATCAAATAAATCTTTTTGGTTTTGCAGCGACGAAAATTTAAGGCATGATACATTCCTAAAGAAGCATATGGATGTTGATGGATGGGTTCCCATTCAGTTGATTGCTACTTTTAATAGAGTAAGTTAAATTAATTTTGTTTATGTGTTCAAATATTTTATGGTTGAATTTCTATTTTGTTCTTCCAAATTTTTTAAAATTGATTTTAATCTCAGTTTTAATTTTTAAAATTTTGATATCTATTATAAATTTGATAATAGTAAGGTTATATTACATTATTTAAAAAGGGACTAAATTGAAATTTTAAAAATCTTTATTATTATTATTTTTTTTTTTTGACAGATGCGAATATTGACAAATGATATTGAATACATCTTGTTTGCATTACATGGCTCCAGTGTTGTTGAAGTACAGGTATACATATATCCATTACTTATACGTATTTCATAACTTTATTTTAATTATTTTTTTAAAATTTTGAGAGTGCAATTTGAAACACTAATTTAAATTTGTTAAAATTCTAATTTTTTTTTTTAAATATCAATAGAGTCTCTTGTCATATTATATAAATCACTTTGTTTCTTATTTAGATTATTTTTTCCTTGTATCAGGATGATAAAGTAAGGAGGAAGAAATAA

mRNA sequence

ATGGCACGAGGAAGTTCGAGCAATGGATCAGATGATTATGAGATTAAGGAAAAAATTAGGAATGGTGGGTTTGAACACTATCATATTGACAATCAAATATGGTATTCTCATTCCAATGGCTATGGTTGGGAATTTTGCACCCCCATCGACCCTCCACCTTATTCAGGATACGTACTTTCGAATCCTCAAAATCCCATGGCATATTATATTTCTCCAAATTTTGGACCATCTAACTACATGTATAATTCTTGTTCACCGTCGCCGCCGCCGCCACCGCCCTCGCCGCCAATATATCATCCTTTTCCTACTAAAGAGCTATATTGGAAAATAATAAATCAAGTCAATTATTATTTCAGCGACGAAAATTTAAGGCATGATACATTCCTAAAGAAGCATATGGATGTTGATGGATGGGTTCCCATTCAGTTGATTGCTACTTTTAATAGAATGCGAATATTGACAAATGATATTGAATACATCTTGTTTGCATTACATGGCTCCAGTGTTGTTGAAGTACAGGATGATAAAGTAAGGAGGAAGAAATAA

Coding sequence (CDS)

ATGGCACGAGGAAGTTCGAGCAATGGATCAGATGATTATGAGATTAAGGAAAAAATTAGGAATGGTGGGTTTGAACACTATCATATTGACAATCAAATATGGTATTCTCATTCCAATGGCTATGGTTGGGAATTTTGCACCCCCATCGACCCTCCACCTTATTCAGGATACGTACTTTCGAATCCTCAAAATCCCATGGCATATTATATTTCTCCAAATTTTGGACCATCTAACTACATGTATAATTCTTGTTCACCGTCGCCGCCGCCGCCACCGCCCTCGCCGCCAATATATCATCCTTTTCCTACTAAAGAGCTATATTGGAAAATAATAAATCAAGTCAATTATTATTTCAGCGACGAAAATTTAAGGCATGATACATTCCTAAAGAAGCATATGGATGTTGATGGATGGGTTCCCATTCAGTTGATTGCTACTTTTAATAGAATGCGAATATTGACAAATGATATTGAATACATCTTGTTTGCATTACATGGCTCCAGTGTTGTTGAAGTACAGGATGATAAAGTAAGGAGGAAGAAATAA

Protein sequence

MARGSSSNGSDDYEIKEKIRNGGFEHYHIDNQIWYSHSNGYGWEFCTPIDPPPYSGYVLSNPQNPMAYYISPNFGPSNYMYNSCSPSPPPPPPSPPIYHPFPTKELYWKIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQDDKVRRKK

Homology

[Close]

BLAST of MS028020 vs. NCBI nr
Match: XP_022145446.1 (la-related protein 1B-like [Momordica charantia])

HSP 1 Score: 379.0 bits (972), Expect = 2.3e-101
Identity = 180/181 (99.45%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 1   MARGSSSNGSDDYEIKEKIRNGGFEHYHIDNQIWYSHSNGYGWEFCTPIDPPPYSGYVLS 60
           MARGSSSNGSDDYEIKEKIRNGGFEHYHIDNQIWYSHSNGYGWEFCTPIDPPPYSGYVLS
Sbjct: 1   MARGSSSNGSDDYEIKEKIRNGGFEHYHIDNQIWYSHSNGYGWEFCTPIDPPPYSGYVLS 60

Query: 61  NPQNPMAYYISPNFGPSNYMYNSCSPSPPPPPPSPPIYHPFPTKELYWKIINQVNYYFSD 120
           NPQNPMAYYISPNFGPSNYMYNSCSPS PPPPPSPPIYHPFPTKELYWKIINQVNYYFSD
Sbjct: 61  NPQNPMAYYISPNFGPSNYMYNSCSPS-PPPPPSPPIYHPFPTKELYWKIINQVNYYFSD 120

Query: 121 ENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQDDKVRRK 180
           ENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQDDKVRRK
Sbjct: 121 ENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQDDKVRRK 180

Query: 181 K 182
           K
Sbjct: 181 K 180

[Close]

BLAST of MS028020 vs. NCBI nr
Match: XP_031739211.1 (la-related protein 1C-like [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-28
Identity = 85/177 (48.02%), Postives = 108/177 (61.02%), Query Frame = 0


Query: 6   SSNGSDDYEIKEKIRNGGFEHYHIDNQIWYSHSNGYGWEFCTPIDPPPYSGYVLSNPQNP 65
           S N    Y  + +      E+Y+I N+IW S  +G  W +  P+  P  SG++      P
Sbjct: 49  SRNNKSYYHHQRRAAMNRIEYYNIQNEIWCSSYHG-AWGYSIPLPMPHPSGFL-----PP 108

Query: 66  MAYYISPNFGPSNYMYNSCSPSPPPPPPSPPIYHP--FPTKELYWKIINQVNYYFSDENL 125
           M +YI+  +     MYN      P  PP P IY P  +  K+LYW+IINQVNYYFSDENL
Sbjct: 109 MVHYINEPYN----MYN------PYVPPMPQIYQPPYYYDKKLYWRIINQVNYYFSDENL 168

Query: 126 RHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQDDKVRRK 181
             DTFLK++MD  GWV I LIA+F R++ LTNDIE+ILFAL GSS VEV   K+RRK
Sbjct: 169 FKDTFLKRNMDDHGWVWITLIASFPRIQQLTNDIEFILFALKGSSFVEVWGYKIRRK 209

[Close]

BLAST of MS028020 vs. NCBI nr
Match: KAE9596564.1 (putative winged helix-turn-helix DNA-binding domain-containing protein [Lupinus albus])

HSP 1 Score: 109.0 bits (271), Expect = 4.3e-20
Identity = 80/204 (39.22%), Postives = 107/204 (52.45%), Query Frame = 0


Query: 4   GSSSNGSDDYEIKEKIRNGG-------FEHYHIDN---QIWYSHSNGYGWEFCTP----- 63
           G  SN         + RNGG         H+   N   Q W +H N  G E   P     
Sbjct: 209 GFVSNDHQQQRNSYRNRNGGPHQRGNDAHHHSYGNRRGQEWNTHRNFNGRETHIPPSAVP 268

Query: 64  --IDPPPYSGYVLSNPQNPMAYYISPNFGPSNYMYNSCSPSPPPPPPS----------PP 123
             I PPP S   + +P  PM  + SP   P         P PPPPP S          PP
Sbjct: 269 RFIRPPPNSAQFIHSP--PMRPFGSPAGFPELAPAVVFVPGPPPPPDSLTGVSFMPQMPP 328

Query: 124 IYHPFPTKELYWKIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTND 181
           ++   P  +L+ K++NQ++YYFS+ENL  DTFL+++MD  GWVPI+LIA FN++  LT+ 
Sbjct: 329 LFFTGPDPQLHAKVVNQIDYYFSNENLVKDTFLRQNMDSQGWVPIKLIAGFNKVLQLTDS 388

[Close]

BLAST of MS028020 vs. NCBI nr
Match: TXG59846.1 (hypothetical protein EZV62_014419 [Acer yangbiense])

HSP 1 Score: 108.6 bits (270), Expect = 5.7e-20
Identity = 77/213 (36.15%), Postives = 110/213 (51.64%), Query Frame = 0


Query: 5   SSSNGSDDYEIKEKIRNGGFEHYHID----------------NQIWYSHSNGYGWE---- 64
           S +N    +    K RNGG  H   D                NQ W+SH N  G +    
Sbjct: 271 SGNNDHSQHRTSYKNRNGGTHHPRGDGSHHHNYGGKRDQDRGNQDWHSHRNFNGRDAPMQ 330

Query: 65  -------FCTPIDPPPYSGYVLSNPQNPMAYYIS----PNFGPSNYMYNSCSPSPPPPPP 124
                  F     PPP  G     P  P+  +++    P++G + Y      P P    P
Sbjct: 331 QQRVVQRFMRHPPPPPPPGSTPFIPPGPLRPFVNHIGFPDYGAALYYVAPPIPDPLRGVP 390

Query: 125 ----SPP--IYHPFPTKELYWKIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATF 181
               SPP  +Y   P  +L+ +I+NQ++YYFS+ENL  DT+L+++MD  GWVPI+LIA F
Sbjct: 391 FIGQSPPHAVYFHAPDPQLHSRIVNQIDYYFSNENLIKDTYLRQNMDEQGWVPIKLIAGF 450

[Close]

BLAST of MS028020 vs. NCBI nr
Match: XP_034595161.1 (la-related protein 1A [Setaria viridis] >TKW12678.1 hypothetical protein SEVIR_5G050800v2 [Setaria viridis])

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-19
Identity = 64/144 (44.44%), Postives = 83/144 (57.64%), Query Frame = 0


Query: 45  FCTPIDPPPYSGYV----LSNPQNPMAYY----ISPNFGPSNYMYNSCSPSPPPPPPSPP 104
           F  P+ PPP  GY+       P +PM YY    + P  GP  Y+ N  +PSP   P +  
Sbjct: 263 FVRPMVPPPL-GYINGPPYPGPMHPMYYYMPAPMEPMRGPQRYIQNQPTPSPVLSPKA-- 322

Query: 105 IYHPFPTKELYWKIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTND 164
                   EL  KI+ QV YYFSD NL  D FLK  MD +GWVP+  +A FNR++ +T D
Sbjct: 323 -------AELRSKILTQVEYYFSDTNLERDDFLKSLMDENGWVPVSKVADFNRLKKMTTD 382

Query: 165 IEYILFALHGSSVVEVQDDKVRRK 181
           I  I+ AL  SS++EVQDDK+RR+
Sbjct: 383 IHLIVDALANSSLLEVQDDKIRRR 396

[Close]

BLAST of MS028020 vs. ExPASy Swiss-Prot
Match: Q940X9 (La-related protein 1A OS=Arabidopsis thaliana OX=3702 GN=LARP1A PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.7e-15
Identity = 49/124 (39.52%), Postives = 74/124 (59.68%), Query Frame = 0


Query: 72  PNF-GPSNYMYNSCSPSPPPPP---PSPPIYHPFPTK-----------ELYWKIINQVNY 131
           P F GP  Y+     P PPP     P PP + P+P             +L  +++ QV Y
Sbjct: 234 PGFPGPVYYL-----PGPPPGAIRGPYPPRFAPYPVNQGPPILSPEKLDLRDRVLKQVEY 293

Query: 132 YFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQDDK 181
           YFSDENL +D +L   MD +GWVP ++IA F R++ +T D+++I++AL  S+ VEVQ D+
Sbjct: 294 YFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDFIVYALGFSNSVEVQGDQ 352

[Close]

BLAST of MS028020 vs. ExPASy Swiss-Prot
Match: Q8RWR2 (La-related protein 1B OS=Arabidopsis thaliana OX=3702 GN=LARP1B PE=1 SV=2)

HSP 1 Score: 82.0 bits (201), Expect = 7.5e-15
Identity = 68/203 (33.50%), Postives = 94/203 (46.31%), Query Frame = 0


Query: 3   RGSSSN-GSDDYEIKEKIRNGGFEHYHIDNQIWYSHSNGYGWEFCTPIDPPPYSGYVLSN 62
           R S  N  S  Y   E + +G   +Y   NQ  +SH N  G +    +   P  G  +  
Sbjct: 210 RNSQRNRNSSSYPRGEGLHHGNRRNYEHGNQSGFSHRNYSGRD----MHLQPQRGVGMIR 269

Query: 63  PQNPMA----------YYISPNFGP-------SNYMYNSCSPSPPPPP-------PSPPI 122
           PQ  M           Y  +P  G         +Y  +   P P P P       P  P+
Sbjct: 270 PQMLMGPPSFPASSAQYMAAPQLGSYGGPIIYPDYAQHVFMPHPSPDPMGLVGPFPLQPM 329

Query: 123 YHPFPTKELYWKIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDI 181
           Y       LY KI+ QV YYFS +NL  D  L+  M+ +GWVP+++IA F R+  LTN+I
Sbjct: 330 YFRNFDAILYNKILTQVEYYFSADNLSRDEHLRDQMNDEGWVPVRVIAAFRRLAELTNNI 389

[Close]

BLAST of MS028020 vs. ExPASy Swiss-Prot
Match: Q6PKG0 (La-related protein 1 OS=Homo sapiens OX=9606 GN=LARP1 PE=1 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 3.7e-14
Identity = 38/72 (52.78%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 110 IINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSV 169
           I  Q+ YYFS +NL  D FL++ MD DG++PI LIA+F+R++ LT DI  I  AL  S V
Sbjct: 407 IKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKV 466

Query: 170 VEVQDDKVRRKK 182
           VE+ D+KVRR++
Sbjct: 467 VEIVDEKVRRRE 478

[Close]

BLAST of MS028020 vs. ExPASy Swiss-Prot
Match: Q6ZQ58 (La-related protein 1 OS=Mus musculus OX=10090 GN=Larp1 PE=1 SV=3)

HSP 1 Score: 77.4 bits (189), Expect = 1.8e-13
Identity = 37/72 (51.39%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 110 IINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSV 169
           I  Q+ YYFS +NL  D FL++ MD DG++PI LIA+F+R++ LT DI  I  AL  S V
Sbjct: 382 IKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKV 441

Query: 170 VEVQDDKVRRKK 182
           VE+ ++KVRR++
Sbjct: 442 VEMVEEKVRRRE 453

[Close]

BLAST of MS028020 vs. ExPASy Swiss-Prot
Match: J9VT60 (La RNA-binding domain-containing protein LHP1 OS=Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) OX=235443 GN=LHP1 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.7e-11
Identity = 41/99 (41.41%), Postives = 62/99 (62.63%), Query Frame = 0


Query: 80  MYNSCSPSPPPPPPSPPIYHPFPTKELYWKIINQVNYYFSDENLRHDTFLKKHMDVDGWV 139
           MY S S  PPPP P   + +  P   L + ++ QV YYFS +NL  D FL++ MD +GW+
Sbjct: 690 MYKSAS-MPPPPMPQTVVPNLDP---LRFYVLGQVEYYFSMQNLAMDFFLRQQMDSEGWI 749

Query: 140 PIQLIATFNRMRILTNDIEYILFALHGSSVVEVQDDKVR 179
            I +IA+FNR++ LT +   +   +  S+ +EV++DKVR
Sbjct: 750 DIAMIASFNRIKSLTPETSIVRECMILSNYLEVREDKVR 784

[Close]

BLAST of MS028020 vs. ExPASy TrEMBL
Match: A0A6J1CWB8 (la-related protein 1B-like OS=Momordica charantia OX=3673 GN=LOC111014890 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 1.1e-101
Identity = 180/181 (99.45%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 1   MARGSSSNGSDDYEIKEKIRNGGFEHYHIDNQIWYSHSNGYGWEFCTPIDPPPYSGYVLS 60
           MARGSSSNGSDDYEIKEKIRNGGFEHYHIDNQIWYSHSNGYGWEFCTPIDPPPYSGYVLS
Sbjct: 1   MARGSSSNGSDDYEIKEKIRNGGFEHYHIDNQIWYSHSNGYGWEFCTPIDPPPYSGYVLS 60

Query: 61  NPQNPMAYYISPNFGPSNYMYNSCSPSPPPPPPSPPIYHPFPTKELYWKIINQVNYYFSD 120
           NPQNPMAYYISPNFGPSNYMYNSCSPS PPPPPSPPIYHPFPTKELYWKIINQVNYYFSD
Sbjct: 61  NPQNPMAYYISPNFGPSNYMYNSCSPS-PPPPPSPPIYHPFPTKELYWKIINQVNYYFSD 120

Query: 121 ENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQDDKVRRK 180
           ENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQDDKVRRK
Sbjct: 121 ENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQDDKVRRK 180

Query: 181 K 182
           K
Sbjct: 181 K 180

[Close]

BLAST of MS028020 vs. ExPASy TrEMBL
Match: A0A6A4P7P9 (Putative winged helix-turn-helix DNA-binding domain-containing protein OS=Lupinus albus OX=3870 GN=Lalb_Chr16g0377401 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.1e-20
Identity = 80/204 (39.22%), Postives = 107/204 (52.45%), Query Frame = 0


Query: 4   GSSSNGSDDYEIKEKIRNGG-------FEHYHIDN---QIWYSHSNGYGWEFCTP----- 63
           G  SN         + RNGG         H+   N   Q W +H N  G E   P     
Sbjct: 209 GFVSNDHQQQRNSYRNRNGGPHQRGNDAHHHSYGNRRGQEWNTHRNFNGRETHIPPSAVP 268

Query: 64  --IDPPPYSGYVLSNPQNPMAYYISPNFGPSNYMYNSCSPSPPPPPPS----------PP 123
             I PPP S   + +P  PM  + SP   P         P PPPPP S          PP
Sbjct: 269 RFIRPPPNSAQFIHSP--PMRPFGSPAGFPELAPAVVFVPGPPPPPDSLTGVSFMPQMPP 328

Query: 124 IYHPFPTKELYWKIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTND 181
           ++   P  +L+ K++NQ++YYFS+ENL  DTFL+++MD  GWVPI+LIA FN++  LT+ 
Sbjct: 329 LFFTGPDPQLHAKVVNQIDYYFSNENLVKDTFLRQNMDSQGWVPIKLIAGFNKVLQLTDS 388

[Close]

BLAST of MS028020 vs. ExPASy TrEMBL
Match: A0A5C7HU74 (HTH La-type RNA-binding domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_014419 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.7e-20
Identity = 77/213 (36.15%), Postives = 110/213 (51.64%), Query Frame = 0


Query: 5   SSSNGSDDYEIKEKIRNGGFEHYHID----------------NQIWYSHSNGYGWE---- 64
           S +N    +    K RNGG  H   D                NQ W+SH N  G +    
Sbjct: 271 SGNNDHSQHRTSYKNRNGGTHHPRGDGSHHHNYGGKRDQDRGNQDWHSHRNFNGRDAPMQ 330

Query: 65  -------FCTPIDPPPYSGYVLSNPQNPMAYYIS----PNFGPSNYMYNSCSPSPPPPPP 124
                  F     PPP  G     P  P+  +++    P++G + Y      P P    P
Sbjct: 331 QQRVVQRFMRHPPPPPPPGSTPFIPPGPLRPFVNHIGFPDYGAALYYVAPPIPDPLRGVP 390

Query: 125 ----SPP--IYHPFPTKELYWKIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATF 181
               SPP  +Y   P  +L+ +I+NQ++YYFS+ENL  DT+L+++MD  GWVPI+LIA F
Sbjct: 391 FIGQSPPHAVYFHAPDPQLHSRIVNQIDYYFSNENLIKDTYLRQNMDEQGWVPIKLIAGF 450

[Close]

BLAST of MS028020 vs. ExPASy TrEMBL
Match: A0A368R1D6 (HTH La-type RNA-binding domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_5G051400v2 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 6.1e-20
Identity = 64/144 (44.44%), Postives = 83/144 (57.64%), Query Frame = 0


Query: 45  FCTPIDPPPYSGYV----LSNPQNPMAYY----ISPNFGPSNYMYNSCSPSPPPPPPSPP 104
           F  P+ PPP  GY+       P +PM YY    + P  GP  Y+ N  +PSP   P +  
Sbjct: 263 FVRPMVPPPL-GYINGPPYPGPMHPMYYYMPAPMEPMRGPQRYIQNQPTPSPVLSPKA-- 322

Query: 105 IYHPFPTKELYWKIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTND 164
                   EL  KI+ QV YYFSD NL  D FLK  MD +GWVP+  +A FNR++ +T D
Sbjct: 323 -------AELRSKILTQVEYYFSDTNLERDDFLKSLMDENGWVPVSKVADFNRLKKMTTD 382

Query: 165 IEYILFALHGSSVVEVQDDKVRRK 181
           I  I+ AL  SS++EVQDDK+RR+
Sbjct: 383 IHLIVDALANSSLLEVQDDKIRRR 396

[Close]

BLAST of MS028020 vs. ExPASy TrEMBL
Match: K3XG47 (HTH La-type RNA-binding domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 6.1e-20
Identity = 64/144 (44.44%), Postives = 83/144 (57.64%), Query Frame = 0


Query: 45  FCTPIDPPPYSGYV----LSNPQNPMAYY----ISPNFGPSNYMYNSCSPSPPPPPPSPP 104
           F  P+ PPP  GY+       P +PM YY    + P  GP  Y+ N  +PSP   P +  
Sbjct: 263 FVRPMVPPPL-GYINGPPYPGPMHPMYYYMPAPMEPMRGPQRYIQNQPTPSPVLSPKA-- 322

Query: 105 IYHPFPTKELYWKIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTND 164
                   EL  KI+ QV YYFSD NL  D FLK  MD +GWVP+  +A FNR++ +T D
Sbjct: 323 -------AELRSKILTQVEYYFSDTNLERDDFLKSLMDENGWVPVSKVADFNRLKKMTTD 382

Query: 165 IEYILFALHGSSVVEVQDDKVRRK 181
           I  I+ AL  SS++EVQDDK+RR+
Sbjct: 383 IHLIVDALANSSLLEVQDDKIRRR 396

[Close]

BLAST of MS028020 vs. TAIR 10
Match: AT5G21160.1 (LA RNA-binding protein )

HSP 1 Score: 82.4 bits (202), Expect = 4.1e-16
Identity = 49/124 (39.52%), Postives = 74/124 (59.68%), Query Frame = 0


Query: 72  PNF-GPSNYMYNSCSPSPPPPP---PSPPIYHPFPTK-----------ELYWKIINQVNY 131
           P F GP  Y+     P PPP     P PP + P+P             +L  +++ QV Y
Sbjct: 234 PGFPGPVYYL-----PGPPPGAIRGPYPPRFAPYPVNQGPPILSPEKLDLRDRVLKQVEY 293

Query: 132 YFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQDDK 181
           YFSDENL +D +L   MD +GWVP ++IA F R++ +T D+++I++AL  S+ VEVQ D+
Sbjct: 294 YFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDFIVYALGFSNSVEVQGDQ 352

[Close]

BLAST of MS028020 vs. TAIR 10
Match: AT5G21160.3 (LA RNA-binding protein )

HSP 1 Score: 82.4 bits (202), Expect = 4.1e-16
Identity = 49/124 (39.52%), Postives = 74/124 (59.68%), Query Frame = 0


Query: 72  PNF-GPSNYMYNSCSPSPPPPP---PSPPIYHPFPTK-----------ELYWKIINQVNY 131
           P F GP  Y+     P PPP     P PP + P+P             +L  +++ QV Y
Sbjct: 234 PGFPGPVYYL-----PGPPPGAIRGPYPPRFAPYPVNQGPPILSPEKLDLRDRVLKQVEY 293

Query: 132 YFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQDDK 181
           YFSDENL +D +L   MD +GWVP ++IA F R++ +T D+++I++AL  S+ VEVQ D+
Sbjct: 294 YFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDFIVYALGFSNSVEVQGDQ 352

[Close]

BLAST of MS028020 vs. TAIR 10
Match: AT5G21160.2 (LA RNA-binding protein )

HSP 1 Score: 82.4 bits (202), Expect = 4.1e-16
Identity = 49/124 (39.52%), Postives = 74/124 (59.68%), Query Frame = 0


Query: 72  PNF-GPSNYMYNSCSPSPPPPP---PSPPIYHPFPTK-----------ELYWKIINQVNY 131
           P F GP  Y+     P PPP     P PP + P+P             +L  +++ QV Y
Sbjct: 234 PGFPGPVYYL-----PGPPPGAIRGPYPPRFAPYPVNQGPPILSPEKLDLRDRVLKQVEY 293

Query: 132 YFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQDDK 181
           YFSDENL +D +L   MD +GWVP ++IA F R++ +T D+++I++AL  S+ VEVQ D+
Sbjct: 294 YFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDFIVYALGFSNSVEVQGDQ 352

[Close]

BLAST of MS028020 vs. TAIR 10
Match: AT5G66100.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 82.0 bits (201), Expect = 5.3e-16
Identity = 68/203 (33.50%), Postives = 94/203 (46.31%), Query Frame = 0


Query: 3   RGSSSN-GSDDYEIKEKIRNGGFEHYHIDNQIWYSHSNGYGWEFCTPIDPPPYSGYVLSN 62
           R S  N  S  Y   E + +G   +Y   NQ  +SH N  G +    +   P  G  +  
Sbjct: 211 RNSQRNRNSSSYPRGEGLHHGNRRNYEHGNQSGFSHRNYSGRD----MHLQPQRGVGMIR 270

Query: 63  PQNPMA----------YYISPNFGP-------SNYMYNSCSPSPPPPP-------PSPPI 122
           PQ  M           Y  +P  G         +Y  +   P P P P       P  P+
Sbjct: 271 PQMLMGPPSFPASSAQYMAAPQLGSYGGPIIYPDYAQHVFMPHPSPDPMGLVGPFPLQPM 330

Query: 123 YHPFPTKELYWKIINQVNYYFSDENLRHDTFLKKHMDVDGWVPIQLIATFNRMRILTNDI 181
           Y       LY KI+ QV YYFS +NL  D  L+  M+ +GWVP+++IA F R+  LTN+I
Sbjct: 331 YFRNFDAILYNKILTQVEYYFSADNLSRDEHLRDQMNDEGWVPVRVIAAFRRLAELTNNI 390

[Close]

BLAST of MS028020 vs. TAIR 10
Match: AT4G35890.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 68.2 bits (165), Expect = 7.9e-12
Identity = 39/108 (36.11%), Postives = 65/108 (60.19%), Query Frame = 0


Query: 76  PSNYMYNSCSPSPP---PPPPSPPIYHPFPTKELYWKIINQVNYYFSDENLRHDTFLKKH 135
           P+    +S  P  P   P P  P  ++ +    L+ K+  Q+ YYFSDENL  D +L+  
Sbjct: 336 PTELAQSSYYPRMPYMTPIPHGPQFFYHYQDPPLHMKLHKQIQYYFSDENLITDIYLRGF 395

Query: 136 MDVDGWVPIQLIATFNRMRILTNDIEYILFALHGSSVVEVQDDKVRRK 181
           M+ +G+VP++++A F ++  LT++I+ I+ AL  S  VEVQ D +R++
Sbjct: 396 MNNEGFVPLRVVAGFKKVAELTDNIQQIVEALQNSPHVEVQGDFIRKR 443

The following BLAST results are available for this feature:

BLAST of MS028020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145446.1	2.3e-101	99.45	la-related protein 1B-like [Momordica charantia]	[more]
XP_031739211.1	1.1e-28	48.02	la-related protein 1C-like [Cucumis sativus]	[more]
KAE9596564.1	4.3e-20	39.22	putative winged helix-turn-helix DNA-binding domain-containing protein [Lupinus ...	[more]
TXG59846.1	5.7e-20	36.15	hypothetical protein EZV62_014419 [Acer yangbiense]	[more]
XP_034595161.1	1.3e-19	44.44	la-related protein 1A [Setaria viridis] >TKW12678.1 hypothetical protein SEVIR_5...	[more]

BLAST of MS028020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940X9	5.7e-15	39.52	La-related protein 1A OS=Arabidopsis thaliana OX=3702 GN=LARP1A PE=1 SV=1	[more]
Q8RWR2	7.5e-15	33.50	La-related protein 1B OS=Arabidopsis thaliana OX=3702 GN=LARP1B PE=1 SV=2	[more]
Q6PKG0	3.7e-14	52.78	La-related protein 1 OS=Homo sapiens OX=9606 GN=LARP1 PE=1 SV=2	[more]
Q6ZQ58	1.8e-13	51.39	La-related protein 1 OS=Mus musculus OX=10090 GN=Larp1 PE=1 SV=3	[more]
J9VT60	1.7e-11	41.41	La RNA-binding domain-containing protein LHP1 OS=Cryptococcus neoformans var. gr...	[more]

BLAST of MS028020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CWB8	1.1e-101	99.45	la-related protein 1B-like OS=Momordica charantia OX=3673 GN=LOC111014890 PE=4 S...	[more]
A0A6A4P7P9	2.1e-20	39.22	Putative winged helix-turn-helix DNA-binding domain-containing protein OS=Lupinu...	[more]
A0A5C7HU74	2.7e-20	36.15	HTH La-type RNA-binding domain-containing protein OS=Acer yangbiense OX=1000413 ...	[more]
A0A368R1D6	6.1e-20	44.44	HTH La-type RNA-binding domain-containing protein OS=Setaria italica OX=4555 GN=...	[more]
K3XG47	6.1e-20	44.44	HTH La-type RNA-binding domain-containing protein OS=Setaria italica OX=4555 PE=...	[more]

BLAST of MS028020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G21160.1	4.1e-16	39.52	LA RNA-binding protein	[more]
AT5G21160.3	4.1e-16	39.52	LA RNA-binding protein	[more]
AT5G21160.2	4.1e-16	39.52	LA RNA-binding protein	[more]
AT5G66100.1	5.3e-16	33.50	winged-helix DNA-binding transcription factor family protein	[more]
AT4G35890.1	7.9e-12	36.11	winged-helix DNA-binding transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002344	Lupus La protein	PRINTS	PR00302	LUPUSLA	coord: 113..130 score: 59.09 coord: 168..181 score: 21.43
IPR006630	La-type HTH domain	SMART	SM00715	la	coord: 104..180 e-value: 1.5E-28 score: 110.9
IPR006630	La-type HTH domain	PFAM	PF05383	La	coord: 110..164 e-value: 1.0E-22 score: 79.9
IPR006630	La-type HTH domain	PROSITE	PS50961	HTH_LA	coord: 100..181 score: 27.364201
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 99..181 e-value: 2.5E-30 score: 106.1
None	No IPR available	PANTHER	PTHR22792:SF132	LA-RELATED PROTEIN 1B	coord: 43..180
None	No IPR available	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 43..180
None	No IPR available	CDD	cd07323	LAM	coord: 109..179 e-value: 2.46002E-36 score: 119.174
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 96..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS028020.1	MS028020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005634	nucleus
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003723	RNA binding