MS028009 (gene) Bitter gourd (TR) v1

Overview
NameMS028009
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold382: 381681 .. 381968 (-)
RNA-Seq ExpressionMS028009
SyntenyMS028009
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGTTGGCGCTACGCCTTGGTCTGAAGCATGTTTTGATCGAGTCTGATTATTTGGAGGCAATAAACTTGATTATTGGAGATCTTGATTGGAGAGGTGAAGAGGCTAATTGGATTTTGGACATCAAAGAGCTTTCTCACGCATTCTCTCTGGTCTTGTTTCATCATATGTATAGGGAATCAAACCAGGGAGCTCACTCCTTGGCAAGGGAAGCTCTCAAGGTTAGGGCAAGCTTATCTATGGCTTTCCAATTTTCCTCTTTGCGTTCGTCAGCGTGTTGTTGCTGA

mRNA sequence

ATGCGGTTGGCGCTACGCCTTGGTCTGAAGCATGTTTTGATCGAGTCTGATTATTTGGAGGCAATAAACTTGATTATTGGAGATCTTGATTGGAGAGGTGAAGAGGCTAATTGGATTTTGGACATCAAAGAGCTTTCTCACGCATTCTCTCTGGTCTTGTTTCATCATATGTATAGGGAATCAAACCAGGGAGCTCACTCCTTGGCAAGGGAAGCTCTCAAGGTTAGGGCAAGCTTATCTATGGCTTTCCAATTTTCCTCTTTGCGTTCGTCAGCGTGTTGTTGCTGA

Coding sequence (CDS)

ATGCGGTTGGCGCTACGCCTTGGTCTGAAGCATGTTTTGATCGAGTCTGATTATTTGGAGGCAATAAACTTGATTATTGGAGATCTTGATTGGAGAGGTGAAGAGGCTAATTGGATTTTGGACATCAAAGAGCTTTCTCACGCATTCTCTCTGGTCTTGTTTCATCATATGTATAGGGAATCAAACCAGGGAGCTCACTCCTTGGCAAGGGAAGCTCTCAAGGTTAGGGCAAGCTTATCTATGGCTTTCCAATTTTCCTCTTTGCGTTCGTCAGCGTGTTGTTGCTGA

Protein sequence

MRLALRLGLKHVLIESDYLEAINLIIGDLDWRGEEANWILDIKELSHAFSLVLFHHMYRESNQGAHSLAREALKVRASLSMAFQFSSLRSSACCC
Homology
BLAST of MS028009 vs. NCBI nr
Match: XP_022158489.1 (uncharacterized protein LOC111024968 [Momordica charantia])

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-08
Identity = 33/85 (38.82%), Postives = 50/85 (58.82%), Query Frame = 0

Query: 1   MRLALRLGLKHVLIESDYLEAINLIIGDLDWRGEEANWILDIKELSHAFSLVLFHHMYRE 60
           + LA RLG+  V++E+D LEA+NLI     W+GE  +W+ DI+  +  F  + F H++RE
Sbjct: 126 LSLATRLGVHRVVVETDSLEALNLIGDKSPWKGEAVSWVEDIRAFARDFQEICFQHVFRE 185

Query: 61  SNQGAHSLAREALKVRASLSMAFQF 86
           SN  A+ L RE + +R        F
Sbjct: 186 SNAVAYHLGRETISLRCGFLWRLDF 210

BLAST of MS028009 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 57.8 bits (138), Expect = 6.0e-05
Identity = 26/70 (37.14%), Postives = 43/70 (61.43%), Query Frame = 0

Query: 1    MRLALRLGLKHVLIESDYLEAINLIIGDLDWRGEEANWILDIKELSHAFSLVLFHHMYRE 60
            ++ A      H+ +ESD L AI LI  ++  RG+E NW+++I+ L+  F+ + F H  R+
Sbjct: 1354 LKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQ 1413

Query: 61   SNQGAHSLAR 71
             N+ AH LA+
Sbjct: 1414 CNRAAHGLAK 1423

BLAST of MS028009 vs. NCBI nr
Match: XP_023889265.1 (uncharacterized protein LOC112001321 [Quercus suber])

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-04
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 0

Query: 3   LALRLGLKHVLIESDYLEAINLIIGDLDWRGEEANWILDIKELSHAFSLVLFHHMYRESN 62
           LAL LG+ HV++ESD L  I  I  D+ + GE  + + +IK++S +FS   F H+ R  N
Sbjct: 193 LALELGISHVIVESDALSIIQAINEDV-FGGELGHIVQNIKDISSSFSWCSFQHLIRSGN 252

Query: 63  QGAHSLAREA 73
           + AH LAR A
Sbjct: 253 RAAHELARAA 261

BLAST of MS028009 vs. NCBI nr
Match: XP_023894347.1 (uncharacterized protein LOC112006297 [Quercus suber])

HSP 1 Score: 54.3 bits (129), Expect = 6.7e-04
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 0

Query: 3   LALRLGLKHVLIESDYLEAINLIIGDLDWRGEEANWILDIKELSHAFSLVLFHHMYRESN 62
           LAL LG+ HV+++SD L  I  I  D+   GE  + + +IK++S +FS  LF H+ R  N
Sbjct: 420 LALELGISHVILKSDALSIIQDINEDV-LGGELGHIVQNIKDISSSFSWCLFQHLNRSGN 479

Query: 63  QGAHSLAREA 73
           + AH LAR A
Sbjct: 480 RAAHELARVA 488

BLAST of MS028009 vs. ExPASy TrEMBL
Match: A0A6J1DZK3 (uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024968 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.4e-09
Identity = 33/85 (38.82%), Postives = 50/85 (58.82%), Query Frame = 0

Query: 1   MRLALRLGLKHVLIESDYLEAINLIIGDLDWRGEEANWILDIKELSHAFSLVLFHHMYRE 60
           + LA RLG+  V++E+D LEA+NLI     W+GE  +W+ DI+  +  F  + F H++RE
Sbjct: 126 LSLATRLGVHRVVVETDSLEALNLIGDKSPWKGEAVSWVEDIRAFARDFQEICFQHVFRE 185

Query: 61  SNQGAHSLAREALKVRASLSMAFQF 86
           SN  A+ L RE + +R        F
Sbjct: 186 SNAVAYHLGRETISLRCGFLWRLDF 210

BLAST of MS028009 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.9e-05
Identity = 26/70 (37.14%), Postives = 43/70 (61.43%), Query Frame = 0

Query: 1    MRLALRLGLKHVLIESDYLEAINLIIGDLDWRGEEANWILDIKELSHAFSLVLFHHMYRE 60
            ++ A      H+ +ESD L AI LI  ++  RG+E NW+++I+ L+  F+ + F H  R+
Sbjct: 1354 LKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQ 1413

Query: 61   SNQGAHSLAR 71
             N+ AH LA+
Sbjct: 1414 CNRAAHGLAK 1423

BLAST of MS028009 vs. ExPASy TrEMBL
Match: A0A6P9EME2 (uncharacterized protein LOC118348173 OS=Juglans regia OX=51240 GN=LOC118348173 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 9.4e-04
Identity = 29/75 (38.67%), Postives = 44/75 (58.67%), Query Frame = 0

Query: 1   MRLALRLGLKHVLIESDYLEAINLIIGDLDWRGEEANWILDIKELSHAFSLVLFHHMYRE 60
           M+  + +G+ H+++ESD L +I+ +  D            +IK+L+  F L LF H+YRE
Sbjct: 364 MQQCVTMGVSHLVVESDSLLSIDALNDDSMTNSLLGVIYYEIKKLASCFVLCLFSHVYRE 423

Query: 61  SNQGAHSLAREALKV 76
            N+ AH LAR A KV
Sbjct: 424 GNRVAHKLARNACKV 438

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158489.11.5e-0838.82uncharacterized protein LOC111024968 [Momordica charantia][more]
XP_022158377.16.0e-0537.14uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_023889265.11.0e-0444.29uncharacterized protein LOC112001321 [Quercus suber][more]
XP_023894347.16.7e-0444.29uncharacterized protein LOC112006297 [Quercus suber][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DZK37.4e-0938.82uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1DX302.9e-0537.14uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6P9EME29.4e-0438.67uncharacterized protein LOC118348173 OS=Juglans regia OX=51240 GN=LOC118348173 P... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 1..72
e-value: 8.3E-14
score: 51.5
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..83
e-value: 5.2E-9
score: 38.0
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 1..70
e-value: 3.75246E-13
score: 58.4796

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS028009.1MS028009.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity