MS027792 (gene) Bitter gourd (TR) v1

Overview
NameMS027792
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibose-phosphate pyrophosphokinase 1-like
Locationscaffold22: 222763 .. 222987 (+)
RNA-Seq ExpressionMS027792
SyntenyMS027792
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGCTACAAACAGGCTTTCTGCAATTGCTTGCCGAAATGGGGCAACTGCAAAATCAAATTCAAGAACGCCTAGGAGTGTTAGAACACTGGATCCTGCCTTGAAAGAAGCGTGCATTCGCGATGCCAGAAAGCGTATCGAGGATTTGGAGGGGAGGCAGCAAGCGCTGCGGGCGGAGCAGCAAGCACTCTATTTCATGTTTCTTCAACAAATGTTGGATTGA

mRNA sequence

ATGGATGCTACAAACAGGCTTTCTGCAATTGCTTGCCGAAATGGGGCAACTGCAAAATCAAATTCAAGAACGCCTAGGAGTGTTAGAACACTGGATCCTGCCTTGAAAGAAGCGTGCATTCGCGATGCCAGAAAGCGTATCGAGGATTTGGAGGGGAGGCAGCAAGCGCTGCGGGCGGAGCAGCAAGCACTCTATTTCATGTTTCTTCAACAAATGTTGGATTGA

Coding sequence (CDS)

ATGGATGCTACAAACAGGCTTTCTGCAATTGCTTGCCGAAATGGGGCAACTGCAAAATCAAATTCAAGAACGCCTAGGAGTGTTAGAACACTGGATCCTGCCTTGAAAGAAGCGTGCATTCGCGATGCCAGAAAGCGTATCGAGGATTTGGAGGGGAGGCAGCAAGCGCTGCGGGCGGAGCAGCAAGCACTCTATTTCATGTTTCTTCAACAAATGTTGGATTGA

Protein sequence

MDATNRLSAIACRNGATAKSNSRTPRSVRTLDPALKEACIRDARKRIEDLEGRQQALRAEQQALYFMFLQQMLD
Homology
BLAST of MS027792 vs. NCBI nr
Match: CAE5979087.1 (unnamed protein product [Arabidopsis arenosa])

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-08
Identity = 46/71 (64.79%), Postives = 47/71 (66.20%), Query Frame = 0

Query: 1  MDATNRLSAIACRNGATAKSNSRTP-------RSVRTLDPALKEACIRDARKRIEDLEGR 60
          MDA NRLSAIA   G                 RSVRTLDPA KEA IR AR+RIEDLEGR
Sbjct: 3  MDAANRLSAIAAEMGQLQNEIQERRRVLNLFLRSVRTLDPARKEARIRAARERIEDLEGR 62

Query: 61 QQALRAEQQAL 65
          QQALRAEQQAL
Sbjct: 63 QQALRAEQQAL 73

BLAST of MS027792 vs. NCBI nr
Match: PLY71280.1 (hypothetical protein LSAT_0X38260 [Lactuca sativa] >PLY79829.1 hypothetical protein LSAT_8X11761 [Lactuca sativa] >PLY99082.1 hypothetical protein LSAT_6X64680 [Lactuca sativa])

HSP 1 Score: 67.8 bits (164), Expect = 4.5e-08
Identity = 45/71 (63.38%), Postives = 46/71 (64.79%), Query Frame = 0

Query: 1  MDATNRLSAIACRNGATAKSNSRTP-------RSVRTLDPALKEACIRDARKRIEDLEGR 60
          MDA NRLSAIA   G                 RSVRTLDP  KEA IR AR+RIEDLEGR
Sbjct: 3  MDAANRLSAIAAEMGQLQNEIEERRRVLNLFFRSVRTLDPTWKEARIRAARERIEDLEGR 62

Query: 61 QQALRAEQQAL 65
          QQALRAEQQAL
Sbjct: 63 QQALRAEQQAL 73

BLAST of MS027792 vs. NCBI nr
Match: GEX80027.1 (ribose-phosphate pyrophosphokinase 1-like [Tanacetum cinerariifolium])

HSP 1 Score: 63.9 bits (154), Expect = 6.6e-07
Identity = 43/71 (60.56%), Postives = 46/71 (64.79%), Query Frame = 0

Query: 1  MDATNRLSAIACRNGATAKSNSRTPR-------SVRTLDPALKEACIRDARKRIEDLEGR 60
          MDA NRLSAIA   G        + R       SVRTLDP LKEA I  AR+RIEDLEGR
Sbjct: 3  MDAANRLSAIAAEMGQLQNLIQESRRVLNLFLKSVRTLDPDLKEARIHAARERIEDLEGR 62

Query: 61 QQALRAEQQAL 65
          QQALRAEQ+ L
Sbjct: 63 QQALRAEQEDL 73

BLAST of MS027792 vs. NCBI nr
Match: GFC03515.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94 [Tanacetum cinerariifolium])

HSP 1 Score: 62.0 bits (149), Expect = 2.5e-06
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 0

Query: 19 KSNSRTPRSVRTLDPALKEACIRDARKRIEDLEGRQQALRAEQQAL 65
          K ++  PRSVRTLDP LKEA IR AR+RI+DLEGRQQALRAEQ+ L
Sbjct: 37 KEHTSRPRSVRTLDPDLKEARIRAARERIKDLEGRQQALRAEQEDL 82

BLAST of MS027792 vs. NCBI nr
Match: CAB4099471.1 (unnamed protein product [Lactuca saligna])

HSP 1 Score: 61.6 bits (148), Expect = 3.3e-06
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 0

Query: 26  RSVRTLDPALKEACIRDARKRIEDLEGRQQALRAEQQAL 65
           RSVRTLDP  KEA IR AR+RIEDLEGRQQALRAEQQAL
Sbjct: 114 RSVRTLDPTWKEARIRAARERIEDLEGRQQALRAEQQAL 152

BLAST of MS027792 vs. ExPASy TrEMBL
Match: A0A2J6K863 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_0X38260 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.2e-08
Identity = 45/71 (63.38%), Postives = 46/71 (64.79%), Query Frame = 0

Query: 1  MDATNRLSAIACRNGATAKSNSRTP-------RSVRTLDPALKEACIRDARKRIEDLEGR 60
          MDA NRLSAIA   G                 RSVRTLDP  KEA IR AR+RIEDLEGR
Sbjct: 3  MDAANRLSAIAAEMGQLQNEIEERRRVLNLFFRSVRTLDPTWKEARIRAARERIEDLEGR 62

Query: 61 QQALRAEQQAL 65
          QQALRAEQQAL
Sbjct: 63 QQALRAEQQAL 73

BLAST of MS027792 vs. ExPASy TrEMBL
Match: A0A6S7NTX4 (Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS26923 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.6e-06
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 0

Query: 26  RSVRTLDPALKEACIRDARKRIEDLEGRQQALRAEQQAL 65
           RSVRTLDP  KEA IR AR+RIEDLEGRQQALRAEQQAL
Sbjct: 114 RSVRTLDPTWKEARIRAARERIEDLEGRQQALRAEQQAL 152

BLAST of MS027792 vs. ExPASy TrEMBL
Match: A0A0D2LRW8 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G159900 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.7e-06
Identity = 42/71 (59.15%), Postives = 44/71 (61.97%), Query Frame = 0

Query: 1   MDATNRLSAIACRNGATAKSNSR-------TPRSVRTLDPALKEACIRDARKRIEDLEGR 60
           MDA NRLSAIA   G                 RSVRT+DPA KEA IR  R+RIE LE R
Sbjct: 33  MDAANRLSAIAAEMGQLQNEIQEHRRVLNFLLRSVRTMDPARKEARIRATRERIEGLEER 92

Query: 61  QQALRAEQQAL 65
           QQALRAEQQAL
Sbjct: 93  QQALRAEQQAL 103

BLAST of MS027792 vs. ExPASy TrEMBL
Match: A0A6S7LWT6 (Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS1276 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.6e-06
Identity = 41/66 (62.12%), Postives = 42/66 (63.64%), Query Frame = 0

Query: 6  RLSAIACRNGATAKSNSRTP-------RSVRTLDPALKEACIRDARKRIEDLEGRQQALR 65
          RLSAIA   G                 RSVRTLDP  KEA IR AR+RIEDLEGRQQALR
Sbjct: 30 RLSAIAAEMGQLQNEIEERRRVLNLFFRSVRTLDPTWKEARIRAARERIEDLEGRQQALR 89

BLAST of MS027792 vs. ExPASy TrEMBL
Match: A0A2J6JM05 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_7X67861 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.6e-06
Identity = 42/71 (59.15%), Postives = 43/71 (60.56%), Query Frame = 0

Query: 1  MDATNRLSAIACRNGATAKSNSRTP-------RSVRTLDPALKEACIRDARKRIEDLEGR 60
          MD  NRLSAIA   G                 RSVRTLDP  KEA I  AR+ IEDLEGR
Sbjct: 3  MDVANRLSAIAAEMGQLQNEIEERRRVLNLFFRSVRTLDPTWKEARICAARECIEDLEGR 62

Query: 61 QQALRAEQQAL 65
          QQALRAEQQAL
Sbjct: 63 QQALRAEQQAL 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CAE5979087.11.6e-0864.79unnamed protein product [Arabidopsis arenosa][more]
PLY71280.14.5e-0863.38hypothetical protein LSAT_0X38260 [Lactuca sativa] >PLY79829.1 hypothetical prot... [more]
GEX80027.16.6e-0760.56ribose-phosphate pyrophosphokinase 1-like [Tanacetum cinerariifolium][more]
GFC03515.12.5e-0673.91retrovirus-related Pol polyprotein from transposon TNT 1-94 [Tanacetum cinerarii... [more]
CAB4099471.13.3e-0687.18unnamed protein product [Lactuca saligna][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2J6K8632.2e-0863.38Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_0X38260 PE=4 SV=1[more]
A0A6S7NTX41.6e-0687.18Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS26923 PE=4 SV=1[more]
A0A0D2LRW82.7e-0659.15Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G159900 PE=4 ... [more]
A0A6S7LWT64.6e-0662.12Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS1276 PE=4 SV=1[more]
A0A2J6JM054.6e-0659.15Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_7X67861 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 40..60
NoneNo IPR availablePANTHERPTHR36344:SF2SUBFAMILY NOT NAMEDcoord: 1..66
NoneNo IPR availablePANTHERPTHR36344FAMILY NOT NAMEDcoord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS027792.1MS027792.1mRNA