MS027695 (gene) Bitter gourd (TR) v1

Overview


Name	MS027695
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Inhibitor cystine knot peptide MCh-1
Location	scaffold729: 23712 .. 24023 (-)
RNA-Seq Expression	MS027695
Synteny	MS027695

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGCAAGAAGATGAGGGTGATGATGGTGTTAGTGGCAGTACTGGTAGTGTTCATGAGTTGCTGTTGTGGCCAATTATCGGCCTTGGCCACTGAAAATATGGTGATCGAATTTGTTTCTTCTGATGACAAAAATGGAGTAGTTGGGGAATACTTGAAGAATTCAAATAATGGTGGATGGAGAAAAATGCTGAAACACAATTCAGCCCTTGGATGTGCTGGAAAGGCATGCAACATCCTTGGCTCCGACCCTTGCGATGCTGGTTGCTTTTGCCTTCCAGTTGGTATTGTTGCAGGAGTATGTGTTTGA

mRNA sequence

ATGGAGGGCAAGAAGATGAGGGTGATGATGGTGTTAGTGGCAGTACTGGTAGTGTTCATGAGTTGCTGTTGTGGCCAATTATCGGCCTTGGCCACTGAAAATATGGTGATCGAATTTGTTTCTTCTGATGACAAAAATGGAGTAGTTGGGGAATACTTGAAGAATTCAAATAATGGTGGATGGAGAAAAATGCTGAAACACAATTCAGCCCTTGGATGTGCTGGAAAGGCATGCAACATCCTTGGCTCCGACCCTTGCGATGCTGGTTGCTTTTGCCTTCCAGTTGGTATTGTTGCAGGAGTATGTGTTTGA

Coding sequence (CDS)

ATGGAGGGCAAGAAGATGAGGGTGATGATGGTGTTAGTGGCAGTACTGGTAGTGTTCATGAGTTGCTGTTGTGGCCAATTATCGGCCTTGGCCACTGAAAATATGGTGATCGAATTTGTTTCTTCTGATGACAAAAATGGAGTAGTTGGGGAATACTTGAAGAATTCAAATAATGGTGGATGGAGAAAAATGCTGAAACACAATTCAGCCCTTGGATGTGCTGGAAAGGCATGCAACATCCTTGGCTCCGACCCTTGCGATGCTGGTTGCTTTTGCCTTCCAGTTGGTATTGTTGCAGGAGTATGTGTTTGA

Protein sequence

MEGKKMRVMMVLVAVLVVFMSCCCGQLSALATENMVIEFVSSDDKNGVVGEYLKNSNNGGWRKMLKHNSALGCAGKACNILGSDPCDAGCFCLPVGIVAGVCV

Homology

[Close]

BLAST of MS027695 vs. NCBI nr
Match: 2M2Q_A (Solution structure of MCh-1: A novel inhibitor cystine knot peptide from Momordica charantia [Momordica charantia])

HSP 1 Score: 71.6 bits (174), Expect = 4.4e-09
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 72  GCAGKACNILGSDPCDAGCFCLPVGIVAGVCV 104
           GCAGK+CNILGSDPCDAGCFCLPVGIVAGVCV
Sbjct: 1   GCAGKSCNILGSDPCDAGCFCLPVGIVAGVCV 32

[Close]

BLAST of MS027695 vs. ExPASy TrEMBL
Match: V5IRT8 (Inhibitor cystine knot peptide MCh-1 OS=Momordica charantia OX=3673 PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.1e-09
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 72  GCAGKACNILGSDPCDAGCFCLPVGIVAGVCV 104
           GCAGK+CNILGSDPCDAGCFCLPVGIVAGVCV
Sbjct: 1   GCAGKSCNILGSDPCDAGCFCLPVGIVAGVCV 32

The following BLAST results are available for this feature:

BLAST of MS027695 vs. NCBI nr


Match Name	E-value	Identity	Description
2M2Q_A	4.4e-09	96.88	Solution structure of MCh-1: A novel inhibitor cystine knot peptide from Momordi...	[more]

BLAST of MS027695 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS027695 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
V5IRT8	2.1e-09	96.88	Inhibitor cystine knot peptide MCh-1 OS=Momordica charantia OX=3673 PE=1 SV=1	[more]

BLAST of MS027695 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..22 score: 7.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS027695.1	MS027695.1	mRNA