MS027400 (gene) Bitter gourd (TR) v1

Overview
NameMS027400
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionxanthine dehydrogenase 1-like
Locationscaffold56: 486542 .. 488889 (-)
RNA-Seq ExpressionMS027400
SyntenyMS027400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTGGAACTTGGAAGCTAGGAAATCTGCTGGTTTTGCTGGCATCTTCCTGGCCAAAGACATCCCAGGTGATTATAAGTTTGGGCCAGTTATTCCTGATGAGGAACTTTTTGCTTCAGAATTTGTCACTTGCATGGCTCAGGTAATGAAAGCTTATTCTACATTCTGACTGCACCTTGCTTTATGTTTTAATATGATATGTATGTTAGAAAATGTATGGATTAGTAAACCATCTTGGGATGGTCCAGTGGTCAATGAGCACGAATGTAAATAGAAAATGACCTAGAGGGAATAAGTTCAAACCATGGTGGCCACCTACCTAGGGATTAAATATCTTACGAAACTGTCCTGGCACATGTTTGGAGCTTGGTACTTTTTTATTGGGATTCTTTAAAGAACTTACTAACTCTAAGAAGGCTAAGAAGGTTTGCAAAGATCTCAATAAGCCAAGACAAGAAATCAACTGAATACAGCTAGGATAAAAGTTTGCTTTTTGAGATATCTATGAATTTATTTCCTCTATATTATTCACCAAGGATCCTAGTTTCTTACTCTTAACCATGCACTTTTACTTTTTAGGGGAGAAAAAGGGAAAATAAACCATAGTTACAAGGAATGATCAGGTTGGACACAAGGCTATGGGAGAGAGAGATGCAAGAGGAGAGAAAACAAGTAATTTGCATAGTAAATCTCTCATTTCTTTAGGCATCACACTCTAAAATTTAGGACTAATCTGTTTTTATTTTAATATAATGTTCTATTTTATATTGTTGAAGAAAATGTAACTTTTTTACAGACTATAGGAGTAGTCTAGGAAACACGGACACTTATTTTTGGGCGAAGTATTNGTCTTTTGGAACTTTGTTTTTTAATTTTGTTGAAGGATGTAATTGACTTCATATTTATGCATTTCATTGTATTTAGCATTTTTTGTGTTAAATTTACATATATCCTAAAAAATATTAAAAAAATAAACGTATCCCCAACGTGTCTGTGTCCTAATTTTTTAGGAATTGACGTATCGCCGTGTCCTATCGTGTCCGTGTCCGTGTCCCGTATCCGTGTCCGTGCTTCTTAGGGAGTAGTAGTTAGTGATACGCATGAAAATGCAAAACTAGTGACAAGAATTGATGCAAGAATATAAATAGTAGCTACAAAGAAAAGAAAATGAAATCCTTGCCTATTAGGATAAGAAAACACTTATATATTAGAACAAGGAAATCCTAACTATTAAAACCTAAATACAAAACCATCCTGCTGTAGCTAGTGGTTAATAAGGGCCAATGTAAATAGCAAAGGGCTTAGAGGGAATAGGTTCAAACTATGGTGGCTACTTATCTAGGATTTAATATCCTACGAATTACCTTGACAACCAAATATAGTACGGTTAGTATTCGGATGGGACGGTCGTAGTGTGAGTTGTTTTAATGAAGTCCATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAACTTAAAAAAAAAAAAAAAAAAAGAAAAAGAAAACTATTAAAACCTAAATACAATATGAAATTAAAAGAATATAATTTAACGCTCCTTTTCTCCATTCCCATTTATAGAATCTAAAAATAATTTTAAAAAACAAATCTACAAAACGATTTGAGGGAAGAGTGGACTTGTCAAACTCCCTCGTGGCTGGACAATTTAGTTTTTTTGGAATTTGTTTTATGTTAAGTTAAAATAAAATAATTTTGTGAATTTGGAAATCCGGATTACATGTTAAACAATAGAAAAATGTTTTTTTCCCTTCTTTTTGGTCTTGGAGGAGAAGCACAAAAAAACAAATGCTCTACCTTGGTAGAGATTTTTGCATTTGGCAGTACAAGTCGAAGCCCGGAATGGCCCCTGTCGGCCTTGAGCCTTTCTCAATTGATGATCATGGTGTTTATTTCAATGGAGGCCTCTATTGGGTTAGAGGAAATATGATGCAAATATCATTATACGTTTGGATATAGACGATGAGAAATTAGAGGAAATTTCTTGTCCCCAACTTAGGATGCTGATCACTTTGCCATTGAAGTCTTTAATGGCACCTTCTGTCTAACTTGTTGTATGGAATTGGAGTACTCCATGTGTGGAAGATGGAAGAAGATTCTTCATGGGCTAAAGCATTTGTTGTTGCTATACCAGAAAAATTGTATTGTACTCCTCTTGATGGCTTCCAACTCATCAAACTCTGTGAAGATGGGAAGATCTTGTGTCTTGTTGTTGGATTTCATTTAATCTTGTATGACTCAGCCACTGAGAGGAAGAGGTTGAAATTAAGGAACATTTAG

mRNA sequence

ATGATTTGGAACTTGGAAGCTAGGAAATCTGCTGGTTTTGCTGGCATCTTCCTGGCCAAAGACATCCCAGGTGATTATAAGTTTGGGCCAGTTATTCCTGATGAGGAACTTTTTGCTTCAGAATTTGTCACTTGCATGGCTCAGTACAAGTCGAAGCCCGGAATGGCCCCTGTCGGCCTTGAGCCTTTCTCAATTGATGATCATGGTGTTTATTTCAATGGAGGCCTCTATTGGATGGAAGAAGATTCTTCATGGGCTAAAGCATTTGTTGTTGCTATACCAGAAAAATTGTATTGTACTCCTCTTGATGGCTTCCAACTCATCAAACTCTGTGAAGATGGGAAGATCTTGTGTCTTGTTGTTGGATTTCATTTAATCTTGTATGACTCAGCCACTGAGAGGAAGAGGTTGAAATTAAGGAACATTTAG

Coding sequence (CDS)

ATGATTTGGAACTTGGAAGCTAGGAAATCTGCTGGTTTTGCTGGCATCTTCCTGGCCAAAGACATCCCAGGTGATTATAAGTTTGGGCCAGTTATTCCTGATGAGGAACTTTTTGCTTCAGAATTTGTCACTTGCATGGCTCAGTACAAGTCGAAGCCCGGAATGGCCCCTGTCGGCCTTGAGCCTTTCTCAATTGATGATCATGGTGTTTATTTCAATGGAGGCCTCTATTGGATGGAAGAAGATTCTTCATGGGCTAAAGCATTTGTTGTTGCTATACCAGAAAAATTGTATTGTACTCCTCTTGATGGCTTCCAACTCATCAAACTCTGTGAAGATGGGAAGATCTTGTGTCTTGTTGTTGGATTTCATTTAATCTTGTATGACTCAGCCACTGAGAGGAAGAGGTTGAAATTAAGGAACATTTAG

Protein sequence

MIWNLEARKSAGFAGIFLAKDIPGDYKFGPVIPDEELFASEFVTCMAQYKSKPGMAPVGLEPFSIDDHGVYFNGGLYWMEEDSSWAKAFVVAIPEKLYCTPLDGFQLIKLCEDGKILCLVVGFHLILYDSATERKRLKLRNI
Homology
[Close]
BLAST of MS027400 vs. NCBI nr
Match: XP_022154105.1 (xanthine dehydrogenase 1-like [Momordica charantia])

HSP 1 Score: 89.0 bits (219), Expect = 3.6e-14
Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 0 

Query: 4   NLEARKSAGFAGIFLAKDIPGDYKFGPVIPDEELFASEFVTCMAQ 49
           +LEARKSAGFAGIFLAKDIPGD KFGPVIPDEELFASEFVTC+ Q
Sbjct: 654 DLEARKSAGFAGIFLAKDIPGDNKFGPVIPDEELFASEFVTCVGQ 698

[Close]
BLAST of MS027400 vs. NCBI nr
Match: XP_022988000.1 (xanthine dehydrogenase 1-like isoform X1 [Cucurbita maxima] >XP_022988001.1 xanthine dehydrogenase 1-like isoform X1 [Cucurbita maxima] >XP_022988002.1 xanthine dehydrogenase 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 82.8 bits (203), Expect = 2.6e-12
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 6   EARKSAGFAGIFLAKDIPGDYKFGPVIPDEELFASEFVTCMAQ 49
           EARKSAGFAGIFLAKDIPGD K GP IPDEELFASEFVTC+ Q
Sbjct: 656 EARKSAGFAGIFLAKDIPGDNKIGPAIPDEELFASEFVTCVGQ 698

[Close]
BLAST of MS027400 vs. NCBI nr
Match: XP_022988003.1 (xanthine dehydrogenase 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 82.8 bits (203), Expect = 2.6e-12
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 6   EARKSAGFAGIFLAKDIPGDYKFGPVIPDEELFASEFVTCMAQ 49
           EARKSAGFAGIFLAKDIPGD K GP IPDEELFASEFVTC+ Q
Sbjct: 656 EARKSAGFAGIFLAKDIPGDNKIGPAIPDEELFASEFVTCVGQ 698

[Close]
BLAST of MS027400 vs. NCBI nr
Match: KAG6590207.1 (Xanthine dehydrogenase 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-11
Identity = 37/43 (86.05%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 6   EARKSAGFAGIFLAKDIPGDYKFGPVIPDEELFASEFVTCMAQ 49
           EARKSAGFAGIFLAKDIP D K GP IPDEELFASEFVTC+ Q
Sbjct: 656 EARKSAGFAGIFLAKDIPADNKIGPAIPDEELFASEFVTCVGQ 698

[Close]
BLAST of MS027400 vs. NCBI nr
Match: XP_022960725.1 (xanthine dehydrogenase 1-like isoform X1 [Cucurbita moschata] >XP_022960726.1 xanthine dehydrogenase 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-11
Identity = 37/43 (86.05%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 6   EARKSAGFAGIFLAKDIPGDYKFGPVIPDEELFASEFVTCMAQ 49
           EARKSAGFAGIFLAKDIP D K GP IPDEELFASEFVTC+ Q
Sbjct: 656 EARKSAGFAGIFLAKDIPADNKIGPAIPDEELFASEFVTCVGQ 698

[Close]
BLAST of MS027400 vs. ExPASy Swiss-Prot
Match: Q8GUQ8 (Xanthine dehydrogenase 1 OS=Arabidopsis thaliana OX=3702 GN=XDH1 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-10
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 7   ARKSAGFAGIFLAKDIPGDYKFGPVIPDEELFASEFVTCMAQ 49
           A+ S+GF G+FLAKDIPGD   GP++PDEELFA++ VTC+ Q
Sbjct: 650 AKSSSGFVGLFLAKDIPGDNMIGPIVPDEELFATDVVTCVGQ 691

[Close]
BLAST of MS027400 vs. ExPASy Swiss-Prot
Match: F4JLI5 (Xanthine dehydrogenase 2 OS=Arabidopsis thaliana OX=3702 GN=XDH2 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.8e-09
Identity = 24/42 (57.14%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 7   ARKSAGFAGIFLAKDIPGDYKFGPVIPDEELFASEFVTCMAQ 49
           A+ S+GF G+FLAKD+PG+   GP++ DEELFA++ VTC+ Q
Sbjct: 642 AKSSSGFVGLFLAKDVPGNNMIGPIVADEELFATDVVTCVGQ 683

[Close]
BLAST of MS027400 vs. ExPASy Swiss-Prot
Match: Q6AUV1 (Xanthine dehydrogenase OS=Oryza sativa subsp. japonica OX=39947 GN=XDH PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-08
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 0 

Query: 7   ARKSAGFAGIFLAKDIPGDYKFGPVIPDEELFASEFVTCMAQ 49
           A+ S GFAG+FL+KD+PG    GPVI DEE+FAS+ VTC+ Q
Sbjct: 658 AKSSPGFAGLFLSKDVPGANHTGPVIHDEEVFASDVVTCVGQ 699

[Close]
BLAST of MS027400 vs. ExPASy TrEMBL
Match: A0A6J1DIP2 (xanthine dehydrogenase 1-like OS=Momordica charantia OX=3673 GN=LOC111021441 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.8e-14
Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 0 

Query: 4   NLEARKSAGFAGIFLAKDIPGDYKFGPVIPDEELFASEFVTCMAQ 49
           +LEARKSAGFAGIFLAKDIPGD KFGPVIPDEELFASEFVTC+ Q
Sbjct: 654 DLEARKSAGFAGIFLAKDIPGDNKFGPVIPDEELFASEFVTCVGQ 698

[Close]
BLAST of MS027400 vs. ExPASy TrEMBL
Match: A0A6J1JID1 (xanthine dehydrogenase 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485375 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 6   EARKSAGFAGIFLAKDIPGDYKFGPVIPDEELFASEFVTCMAQ 49
           EARKSAGFAGIFLAKDIPGD K GP IPDEELFASEFVTC+ Q
Sbjct: 656 EARKSAGFAGIFLAKDIPGDNKIGPAIPDEELFASEFVTCVGQ 698

[Close]
BLAST of MS027400 vs. ExPASy TrEMBL
Match: A0A6J1JL04 (xanthine dehydrogenase 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485375 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 6   EARKSAGFAGIFLAKDIPGDYKFGPVIPDEELFASEFVTCMAQ 49
           EARKSAGFAGIFLAKDIPGD K GP IPDEELFASEFVTC+ Q
Sbjct: 656 EARKSAGFAGIFLAKDIPGDNKIGPAIPDEELFASEFVTCVGQ 698

[Close]
BLAST of MS027400 vs. ExPASy TrEMBL
Match: A0A6J1H9X6 (xanthine dehydrogenase 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461442 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 6.3e-12
Identity = 37/43 (86.05%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 6   EARKSAGFAGIFLAKDIPGDYKFGPVIPDEELFASEFVTCMAQ 49
           EARKSAGFAGIFLAKDIP D K GP IPDEELFASEFVTC+ Q
Sbjct: 656 EARKSAGFAGIFLAKDIPADNKIGPAIPDEELFASEFVTCVGQ 698

[Close]
BLAST of MS027400 vs. ExPASy TrEMBL
Match: A0A6J1H886 (xanthine dehydrogenase 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461442 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 6.3e-12
Identity = 37/43 (86.05%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 6   EARKSAGFAGIFLAKDIPGDYKFGPVIPDEELFASEFVTCMAQ 49
           EARKSAGFAGIFLAKDIP D K GP IPDEELFASEFVTC+ Q
Sbjct: 656 EARKSAGFAGIFLAKDIPADNKIGPAIPDEELFASEFVTCVGQ 698

[Close]
BLAST of MS027400 vs. TAIR 10
Match: AT4G34890.1 (xanthine dehydrogenase 1 )

HSP 1 Score: 67.8 bits (164), Expect = 8.1e-12
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 7   ARKSAGFAGIFLAKDIPGDYKFGPVIPDEELFASEFVTCMAQ 49
           A+ S+GF G+FLAKDIPGD   GP++PDEELFA++ VTC+ Q
Sbjct: 650 AKSSSGFVGLFLAKDIPGDNMIGPIVPDEELFATDVVTCVGQ 691

[Close]
BLAST of MS027400 vs. TAIR 10
Match: AT4G34900.1 (xanthine dehydrogenase 2 )

HSP 1 Score: 62.4 bits (150), Expect = 3.4e-10
Identity = 24/42 (57.14%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 7   ARKSAGFAGIFLAKDIPGDYKFGPVIPDEELFASEFVTCMAQ 49
           A+ S+GF G+FLAKD+PG+   GP++ DEELFA++ VTC+ Q
Sbjct: 642 AKSSSGFVGLFLAKDVPGNNMIGPIVADEELFATDVVTCVGQ 683

The following BLAST results are available for this feature:
BLAST of MS027400 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022154105.13.6e-1491.11xanthine dehydrogenase 1-like [Momordica charantia][more]
XP_022988000.12.6e-1288.37xanthine dehydrogenase 1-like isoform X1 [Cucurbita maxima] >XP_022988001.1 xant... [more]
XP_022988003.12.6e-1288.37xanthine dehydrogenase 1-like isoform X2 [Cucurbita maxima][more]
KAG6590207.11.3e-1186.05Xanthine dehydrogenase 1, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022960725.11.3e-1186.05xanthine dehydrogenase 1-like isoform X1 [Cucurbita moschata] >XP_022960726.1 xa... [more]
BLAST of MS027400 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8GUQ81.1e-1064.29Xanthine dehydrogenase 1 OS=Arabidopsis thaliana OX=3702 GN=XDH1 PE=1 SV=1[more]
F4JLI54.8e-0957.14Xanthine dehydrogenase 2 OS=Arabidopsis thaliana OX=3702 GN=XDH2 PE=2 SV=1[more]
Q6AUV11.8e-0861.90Xanthine dehydrogenase OS=Oryza sativa subsp. japonica OX=39947 GN=XDH PE=2 SV=1[more]
BLAST of MS027400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DIP21.8e-1491.11xanthine dehydrogenase 1-like OS=Momordica charantia OX=3673 GN=LOC111021441 PE=... [more]
A0A6J1JID11.3e-1288.37xanthine dehydrogenase 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A6J1JL041.3e-1288.37xanthine dehydrogenase 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A6J1H9X66.3e-1286.05xanthine dehydrogenase 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1H8866.3e-1286.05xanthine dehydrogenase 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
BLAST of MS027400 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G34890.18.1e-1264.29xanthine dehydrogenase 1 [more]
AT4G34900.13.4e-1057.14xanthine dehydrogenase 2 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS027400.1MS027400.1mRNA