MS027311 (gene) Bitter gourd (TR) v1

Overview


Name	MS027311
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	short-chain dehydrogenase TIC 32, chloroplastic-like
Location	scaffold373: 2274130 .. 2275351 (+)
RNA-Seq Expression	MS027311
Synteny	MS027311

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGTTTTTGAGAAGCAAAGGGCCCTCTGGATTTTCATACTCTTCCACAGCCGAGGAAGTTACTGACGGAATCGATGGCTCCGCTCTCACCGCCATTGTCACAGGTCTTCATTTACCTAAAACACTTTCTTCTTCTTCTCTTTTACTTCGTTTTTAGTTCTGTATTTGCTGAAACATGAAATTTTATCTGTTCCTCTGAATTTGAACCATCGGAAATGGTTTTAGAATTTAGTTTTGGTACTTCTATATCTTTTTGTTTCTGTAATCATTTATTTCCTGTTCTCGCCATGACTGTGGACGGATATATGATTAGAATAGAAAACATTGGGATCTTGAGCTTGGACTGTAGTAGTTCTGCCTGTTTTACTCTCAGTTTCTCGATCAACATTAATTGGCAATATTTTGGTTCCTTAATTTTATTTTTAATATAATTTTTTTATCTTGTAATTAATATATTTTTTAAAATATAAACATTACTTTATACTAAAATTTTTTGAAAATTTTGTTTTAAAAAATTATAAAAAAAATACTAAAATATTACTTCCTAAAAAGTGCAGGATCAAAATGAACATTTTTAAATAGTCTTAAAATCAACTAATACTGAAATTAGAAAATAGTATTTTAATCTTTTAAAAATAGGAAACCAAAAAGGAAAAGTTATTAAATGAGAAATGCATAACAGGTTTCCAACTCGCTCTTATTGTTTGTTTTTGAATGTGTTTCTAAATCATAATGTGTAATTAGTTATTGAAAAGTATGCTTTTTCTTTGATTTTTTATGTAATTTTAAAATAACAGGTTTTAGTTCACCATTTGATTAACCATTCTCTTGGCTTGATCTTCATTACTAAACACAATAGTGCTGAAACCACATATCTGCAGTTTGCTGTATCTCTTCTTTTTGCTCATGACTTATTGTAACCAAGCATTGTTTAGTTGCAGTTACTAGTTTTTTGTTCTTGCTTATGCTCCTATATTCTTACAGGAGCATCGAACGGTATCGGCTCTGAAACTGCGCGCGTTCTTGCATTACGCGGAGTCCATGTCATTATGGCTGTTAGGAACTTAGATGCTGGTAGAGGTGTTAGAGAAGCCATTGTCAAGGAGAATCCCTCTGCAAAGGTTGATGTCATGGAGTTGGATCTTAGCTCGATGGTGTCTATAAGAAAATTTGCCTCAGATTATCGGTCGTCTGGGTTTCCACTTAACATCCTCATGTAA

mRNA sequence

ATGTGGTTTTTGAGAAGCAAAGGGCCCTCTGGATTTTCATACTCTTCCACAGCCGAGGAAGTTACTGACGGAATCGATGGCTCCGCTCTCACCGCCATTGTCACAGGAGCATCGAACGGTATCGGCTCTGAAACTGCGCGCGTTCTTGCATTACGCGGAGTCCATGTCATTATGGCTGTTAGGAACTTAGATGCTGGTAGAGGTGTTAGAGAAGCCATTGTCAAGGAGAATCCCTCTGCAAAGGTTGATGTCATGGAGTTGGATCTTAGCTCGATGGTGTCTATAAGAAAATTTGCCTCAGATTATCGGTCGTCTGGGTTTCCACTTAACATCCTCATGTAA

Coding sequence (CDS)

ATGTGGTTTTTGAGAAGCAAAGGGCCCTCTGGATTTTCATACTCTTCCACAGCCGAGGAAGTTACTGACGGAATCGATGGCTCCGCTCTCACCGCCATTGTCACAGGAGCATCGAACGGTATCGGCTCTGAAACTGCGCGCGTTCTTGCATTACGCGGAGTCCATGTCATTATGGCTGTTAGGAACTTAGATGCTGGTAGAGGTGTTAGAGAAGCCATTGTCAAGGAGAATCCCTCTGCAAAGGTTGATGTCATGGAGTTGGATCTTAGCTCGATGGTGTCTATAAGAAAATTTGCCTCAGATTATCGGTCGTCTGGGTTTCCACTTAACATCCTCATGTAA

Protein sequence

MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNILM

Homology

[Close]

BLAST of MS027311 vs. NCBI nr
Match: XP_022156281.1 (short-chain dehydrogenase TIC 32, chloroplastic-like isoform X2 [Momordica charantia])

HSP 1 Score: 213.4 bits (542), Expect = 1.0e-51
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAV 60
           MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAV
Sbjct: 1   MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAV 60

Query: 61  RNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNILM 114
           RNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNIL+
Sbjct: 61  RNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNILI 113

[Close]

BLAST of MS027311 vs. NCBI nr
Match: XP_022156290.1 (short-chain dehydrogenase TIC 32, chloroplastic-like isoform X3 [Momordica charantia])

HSP 1 Score: 213.4 bits (542), Expect = 1.0e-51
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAV 60
           MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAV
Sbjct: 1   MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAV 60

Query: 61  RNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNILM 114
           RNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNIL+
Sbjct: 61  RNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNILI 113

[Close]

BLAST of MS027311 vs. NCBI nr
Match: XP_022156272.1 (short-chain dehydrogenase TIC 32, chloroplastic-like isoform X1 [Momordica charantia])

HSP 1 Score: 213.4 bits (542), Expect = 1.0e-51
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAV 60
           MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAV
Sbjct: 1   MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAV 60

Query: 61  RNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNILM 114
           RNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNIL+
Sbjct: 61  RNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNILI 113

[Close]

BLAST of MS027311 vs. NCBI nr
Match: XP_004145894.1 (short-chain dehydrogenase TIC 32, chloroplastic [Cucumis sativus] >KGN49936.1 hypothetical protein Csa_000319 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 2.7e-44
Identity = 97/113 (85.84%), Postives = 104/113 (92.04%), Query Frame = 0


Query: 1   MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAV 60
           MW  R KGPSGFS SSTAEEVTDGIDG+ LTAIVTGAS+GIGSETARVLALRGVHVIM V
Sbjct: 1   MWLFRRKGPSGFSSSSTAEEVTDGIDGTGLTAIVTGASSGIGSETARVLALRGVHVIMGV 60

Query: 61  RNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNILM 114
           RNL+AGR VRE IVKENPSAK+D MELDLSSMVS+RKFASDY+SSGFPLNIL+
Sbjct: 61  RNLEAGRNVRETIVKENPSAKIDAMELDLSSMVSVRKFASDYQSSGFPLNILI 113

[Close]

BLAST of MS027311 vs. NCBI nr
Match: XP_008437510.1 (PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Cucumis melo])

HSP 1 Score: 187.2 bits (474), Expect = 7.8e-44
Identity = 96/113 (84.96%), Postives = 103/113 (91.15%), Query Frame = 0


Query: 1   MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAV 60
           MW  R KGPSGFS SSTAEEVTDGIDG+ LTAIVTGAS+GIGSETARVLALRGVHVIM V
Sbjct: 1   MWLFRRKGPSGFSSSSTAEEVTDGIDGTGLTAIVTGASSGIGSETARVLALRGVHVIMGV 60

Query: 61  RNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNILM 114
           RNL+AGR VRE IVKENPSAK+D MELDLSSM S+RKFASDY+SSGFPLNIL+
Sbjct: 61  RNLEAGRNVRETIVKENPSAKIDAMELDLSSMASVRKFASDYQSSGFPLNILV 113

[Close]

BLAST of MS027311 vs. ExPASy Swiss-Prot
Match: A2RVM0 (Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC32 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.3e-38
Identity = 82/113 (72.57%), Postives = 97/113 (85.84%), Query Frame = 0


Query: 1   MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAV 60
           MWF  SKG SGFS  STAEEVT G+DG+ LTAIVTGAS+GIG ETARVL+LRGVHV+MAV
Sbjct: 1   MWFFGSKGASGFSSRSTAEEVTHGVDGTGLTAIVTGASSGIGVETARVLSLRGVHVVMAV 60

Query: 61  RNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNILM 114
           RN D+G  V+E IVK+ P AK+DVMELDLSSM S+RKFAS+Y+S+G PLN+L+
Sbjct: 61  RNTDSGAKVKEDIVKQVPGAKLDVMELDLSSMQSVRKFASEYKSTGLPLNLLI 113

[Close]

BLAST of MS027311 vs. ExPASy Swiss-Prot
Match: Q6RVV4 (Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum OX=3888 GN=TIC32 PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 5.0e-33
Identity = 76/114 (66.67%), Postives = 93/114 (81.58%), Query Frame = 0


Query: 1   MW-FLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMA 60
           MW F   KG SGFS SSTAE+VT GID + LTAIVTGAS+GIG+ET RVLALRG HVIM 
Sbjct: 1   MWPFSSKKGVSGFSGSSTAEQVTHGIDATGLTAIVTGASSGIGAETTRVLALRGAHVIMG 60

Query: 61  VRNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNILM 114
           VRN+ A + V++ I+K+ PSAKVD +ELDLSS+ S++KFAS++ SSG PLNIL+
Sbjct: 61  VRNMVAAKDVKDTILKDIPSAKVDAIELDLSSLDSVKKFASEFNSSGRPLNILI 114

[Close]

BLAST of MS027311 vs. ExPASy Swiss-Prot
Match: A0A078ISJ6 (Short-chain dehydrogenase TIC 32 B, chloroplastic OS=Brassica napus OX=3708 GN=TIC32B PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 7.4e-21
Identity = 52/106 (49.06%), Postives = 73/106 (68.87%), Query Frame = 0


Query: 8   GPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGR 67
           G SG+  +STAE+VT  ID   LTAI+TG ++GIG E ARVL +RG HVI+A RN  A  
Sbjct: 12  GKSGYGSASTAEDVTHSIDAKHLTAIITGGTSGIGLEAARVLGMRGAHVIIAARNTKAAN 71

Query: 68  GVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNILM 114
             +E I++  P+A++D ++LDLSS+ S+R F   + +   PLNIL+
Sbjct: 72  DSKEMILQMYPNARIDCLQLDLSSIKSVRSFIHQFLALNVPLNILI 117

[Close]

BLAST of MS027311 vs. ExPASy Swiss-Prot
Match: A0A078IS66 (Short-chain dehydrogenase TIC 32 A, chloroplastic OS=Brassica napus OX=3708 GN=TIC32A PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.3e-20
Identity = 52/106 (49.06%), Postives = 73/106 (68.87%), Query Frame = 0


Query: 8   GPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNLDAGR 67
           G SG+  +STAE+VT  ID   LTAI+TG ++GIG E ARVL +RG HVI+A RN  A  
Sbjct: 12  GKSGYGSASTAEDVTHSIDAKHLTAIITGGTSGIGLEAARVLGMRGAHVIIASRNTKAAN 71

Query: 68  GVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNILM 114
             +E I++  P+A++D ++LDLSS+ S+R F   + +   PLNIL+
Sbjct: 72  DSKEMILQMYPNARIDCLQLDLSSIKSVRSFIHQFLALNVPLNILI 117

[Close]

BLAST of MS027311 vs. ExPASy Swiss-Prot
Match: Q5F389 (WW domain-containing oxidoreductase OS=Gallus gallus OX=9031 GN=WWOX PE=2 SV=2)

HSP 1 Score: 81.3 bits (199), Expect = 7.9e-15
Identity = 47/110 (42.73%), Postives = 70/110 (63.64%), Query Frame = 0


Query: 6   SKGPSGFSY--SSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAVRNL 65
           +K P+   Y  +STA E+  G D S    I+TGA++GIG ETA+  AL G +VI+A RN+
Sbjct: 99  AKPPTRQKYDGNSTAMEILQGRDLSGKVIIITGANSGIGFETAKSFALHGAYVILACRNM 158

Query: 66  DAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNILM 114
             G    + I++E   AKV+ M LDL+S+ S++ FA  ++S   PL+IL+
Sbjct: 159 SRGNDAVQRILEEWHKAKVEAMTLDLASLRSVQNFAEAFKSKNMPLHILV 208

[Close]

BLAST of MS027311 vs. ExPASy TrEMBL
Match: A0A6J1DUG7 (short-chain dehydrogenase TIC 32, chloroplastic-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111023204 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 4.9e-52
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAV 60
           MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAV
Sbjct: 1   MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAV 60

Query: 61  RNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNILM 114
           RNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNIL+
Sbjct: 61  RNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNILI 113

[Close]

BLAST of MS027311 vs. ExPASy TrEMBL
Match: A0A6J1DRL8 (short-chain dehydrogenase TIC 32, chloroplastic-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111023204 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 4.9e-52
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAV 60
           MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAV
Sbjct: 1   MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAV 60

Query: 61  RNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNILM 114
           RNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNIL+
Sbjct: 61  RNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNILI 113

[Close]

BLAST of MS027311 vs. ExPASy TrEMBL
Match: A0A6J1DPV8 (short-chain dehydrogenase TIC 32, chloroplastic-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111023204 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 4.9e-52
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAV 60
           MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAV
Sbjct: 1   MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAV 60

Query: 61  RNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNILM 114
           RNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNIL+
Sbjct: 61  RNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNILI 113

[Close]

BLAST of MS027311 vs. ExPASy TrEMBL
Match: A0A0A0KQF8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G141100 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.3e-44
Identity = 97/113 (85.84%), Postives = 104/113 (92.04%), Query Frame = 0


Query: 1   MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAV 60
           MW  R KGPSGFS SSTAEEVTDGIDG+ LTAIVTGAS+GIGSETARVLALRGVHVIM V
Sbjct: 1   MWLFRRKGPSGFSSSSTAEEVTDGIDGTGLTAIVTGASSGIGSETARVLALRGVHVIMGV 60

Query: 61  RNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNILM 114
           RNL+AGR VRE IVKENPSAK+D MELDLSSMVS+RKFASDY+SSGFPLNIL+
Sbjct: 61  RNLEAGRNVRETIVKENPSAKIDAMELDLSSMVSVRKFASDYQSSGFPLNILI 113

[Close]

BLAST of MS027311 vs. ExPASy TrEMBL
Match: A0A1S3AUS1 (short-chain dehydrogenase TIC 32, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103482905 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 3.8e-44
Identity = 96/113 (84.96%), Postives = 103/113 (91.15%), Query Frame = 0


Query: 1   MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAV 60
           MW  R KGPSGFS SSTAEEVTDGIDG+ LTAIVTGAS+GIGSETARVLALRGVHVIM V
Sbjct: 1   MWLFRRKGPSGFSSSSTAEEVTDGIDGTGLTAIVTGASSGIGSETARVLALRGVHVIMGV 60

Query: 61  RNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNILM 114
           RNL+AGR VRE IVKENPSAK+D MELDLSSM S+RKFASDY+SSGFPLNIL+
Sbjct: 61  RNLEAGRNVRETIVKENPSAKIDAMELDLSSMASVRKFASDYQSSGFPLNILV 113

[Close]

BLAST of MS027311 vs. TAIR 10
Match: AT4G23430.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 160.2 bits (404), Expect = 9.6e-40
Identity = 82/113 (72.57%), Postives = 97/113 (85.84%), Query Frame = 0


Query: 1   MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAV 60
           MWF  SKG SGFS  STAEEVT G+DG+ LTAIVTGAS+GIG ETARVL+LRGVHV+MAV
Sbjct: 1   MWFFGSKGASGFSSRSTAEEVTHGVDGTGLTAIVTGASSGIGVETARVLSLRGVHVVMAV 60

Query: 61  RNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNILM 114
           RN D+G  V+E IVK+ P AK+DVMELDLSSM S+RKFAS+Y+S+G PLN+L+
Sbjct: 61  RNTDSGAKVKEDIVKQVPGAKLDVMELDLSSMQSVRKFASEYKSTGLPLNLLI 113

[Close]

BLAST of MS027311 vs. TAIR 10
Match: AT4G23430.2 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 160.2 bits (404), Expect = 9.6e-40
Identity = 82/113 (72.57%), Postives = 97/113 (85.84%), Query Frame = 0


Query: 1   MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAV 60
           MWF  SKG SGFS  STAEEVT G+DG+ LTAIVTGAS+GIG ETARVL+LRGVHV+MAV
Sbjct: 1   MWFFGSKGASGFSSRSTAEEVTHGVDGTGLTAIVTGASSGIGVETARVLSLRGVHVVMAV 60

Query: 61  RNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNILM 114
           RN D+G  V+E IVK+ P AK+DVMELDLSSM S+RKFAS+Y+S+G PLN+L+
Sbjct: 61  RNTDSGAKVKEDIVKQVPGAKLDVMELDLSSMQSVRKFASEYKSTGLPLNLLI 113

[Close]

BLAST of MS027311 vs. TAIR 10
Match: AT4G23430.3 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 160.2 bits (404), Expect = 9.6e-40
Identity = 82/113 (72.57%), Postives = 97/113 (85.84%), Query Frame = 0


Query: 1   MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAV 60
           MWF  SKG SGFS  STAEEVT G+DG+ LTAIVTGAS+GIG ETARVL+LRGVHV+MAV
Sbjct: 1   MWFFGSKGASGFSSRSTAEEVTHGVDGTGLTAIVTGASSGIGVETARVLSLRGVHVVMAV 60

Query: 61  RNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNILM 114
           RN D+G  V+E IVK+ P AK+DVMELDLSSM S+RKFAS+Y+S+G PLN+L+
Sbjct: 61  RNTDSGAKVKEDIVKQVPGAKLDVMELDLSSMQSVRKFASEYKSTGLPLNLLI 113

[Close]

BLAST of MS027311 vs. TAIR 10
Match: AT4G23420.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 159.5 bits (402), Expect = 1.6e-39
Identity = 83/113 (73.45%), Postives = 96/113 (84.96%), Query Frame = 0


Query: 1   MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAV 60
           MWF  SKG SGFS  STAEEVT G+DG+ LTAIVTGAS+GIG ETARVLALRGVHV+MAV
Sbjct: 1   MWFFGSKGASGFSSRSTAEEVTHGVDGTGLTAIVTGASSGIGVETARVLALRGVHVVMAV 60

Query: 61  RNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNILM 114
           RN  AG  V+E IVK+ P AKVDVMEL+LSSM S+RKFAS+Y+S+G PLN+L+
Sbjct: 61  RNTGAGAKVKEDIVKQVPGAKVDVMELELSSMESVRKFASEYKSAGLPLNLLI 113

[Close]

BLAST of MS027311 vs. TAIR 10
Match: AT4G23420.2 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 159.5 bits (402), Expect = 1.6e-39
Identity = 83/113 (73.45%), Postives = 96/113 (84.96%), Query Frame = 0


Query: 1   MWFLRSKGPSGFSYSSTAEEVTDGIDGSALTAIVTGASNGIGSETARVLALRGVHVIMAV 60
           MWF  SKG SGFS  STAEEVT G+DG+ LTAIVTGAS+GIG ETARVLALRGVHV+MAV
Sbjct: 1   MWFFGSKGASGFSSRSTAEEVTHGVDGTGLTAIVTGASSGIGVETARVLALRGVHVVMAV 60

Query: 61  RNLDAGRGVREAIVKENPSAKVDVMELDLSSMVSIRKFASDYRSSGFPLNILM 114
           RN  AG  V+E IVK+ P AKVDVMEL+LSSM S+RKFAS+Y+S+G PLN+L+
Sbjct: 61  RNTGAGAKVKEDIVKQVPGAKVDVMELELSSMESVRKFASEYKSAGLPLNLLI 113

The following BLAST results are available for this feature:

BLAST of MS027311 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156281.1	1.0e-51	99.12	short-chain dehydrogenase TIC 32, chloroplastic-like isoform X2 [Momordica chara...	[more]
XP_022156290.1	1.0e-51	99.12	short-chain dehydrogenase TIC 32, chloroplastic-like isoform X3 [Momordica chara...	[more]
XP_022156272.1	1.0e-51	99.12	short-chain dehydrogenase TIC 32, chloroplastic-like isoform X1 [Momordica chara...	[more]
XP_004145894.1	2.7e-44	85.84	short-chain dehydrogenase TIC 32, chloroplastic [Cucumis sativus] >KGN49936.1 hy...	[more]
XP_008437510.1	7.8e-44	84.96	PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Cucumis melo]	[more]

BLAST of MS027311 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2RVM0	1.3e-38	72.57	Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
Q6RVV4	5.0e-33	66.67	Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum OX=3888 GN=TIC3...	[more]
A0A078ISJ6	7.4e-21	49.06	Short-chain dehydrogenase TIC 32 B, chloroplastic OS=Brassica napus OX=3708 GN=T...	[more]
A0A078IS66	1.3e-20	49.06	Short-chain dehydrogenase TIC 32 A, chloroplastic OS=Brassica napus OX=3708 GN=T...	[more]
Q5F389	7.9e-15	42.73	WW domain-containing oxidoreductase OS=Gallus gallus OX=9031 GN=WWOX PE=2 SV=2	[more]

BLAST of MS027311 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DUG7	4.9e-52	99.12	short-chain dehydrogenase TIC 32, chloroplastic-like isoform X2 OS=Momordica cha...	[more]
A0A6J1DRL8	4.9e-52	99.12	short-chain dehydrogenase TIC 32, chloroplastic-like isoform X1 OS=Momordica cha...	[more]
A0A6J1DPV8	4.9e-52	99.12	short-chain dehydrogenase TIC 32, chloroplastic-like isoform X3 OS=Momordica cha...	[more]
A0A0A0KQF8	1.3e-44	85.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G141100 PE=4 SV=1	[more]
A0A1S3AUS1	3.8e-44	84.96	short-chain dehydrogenase TIC 32, chloroplastic-like OS=Cucumis melo OX=3656 GN=...	[more]

BLAST of MS027311 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23430.1	9.6e-40	72.57	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT4G23430.2	9.6e-40	72.57	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT4G23430.3	9.6e-40	72.57	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT4G23420.1	1.6e-39	73.45	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT4G23420.2	1.6e-39	73.45	NAD(P)-binding Rossmann-fold superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002347	Short-chain dehydrogenase/reductase SDR	PFAM	PF00106	adh_short	coord: 31..112 e-value: 1.3E-10 score: 41.1
None	No IPR available	GENE3D	3.40.50.720		coord: 28..113 e-value: 1.9E-19 score: 71.9
None	No IPR available	PANTHER	PTHR24320:SF230	NAD(P)-BINDING ROSSMANN-FOLD PROTEIN	coord: 2..113
None	No IPR available	PANTHER	PTHR24320	RETINOL DEHYDROGENASE	coord: 2..113
IPR036291	NAD(P)-binding domain superfamily	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 31..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS027311.1	MS027311.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016491	oxidoreductase activity