MS027300 (gene) Bitter gourd (TR) v1

Overview
NameMS027300
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold373: 1387482 .. 1387958 (-)
RNA-Seq ExpressionMS027300
SyntenyMS027300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGATGGTGGTCGGGTATTAGGAATCTCTCCATTGGATGTAGATAGTGTTGTTGCAGCTAACGAAATCAAATGCAATAACATTGTTATGTATTGTTTGTGGCTTCGTCATCTAAGCGTGTTGAATAGTTATCAGGCACAAAATTGGAGAGAACAACTGCCTACGATTTCTTGGGATGACTCTACATCTTCGTTGTATCATTGTTCAGAAAACTTTCATGGTCTAGAGGCGATGATGACGAAGCAAAAGGTGGGCGATTTCGGAGGTGCAACGACGATGGACTTAAACACCAATTTAGAATTTGTTGAGGCTATCAATCTTTATTGTATTGAGATTCGCCAACATGATTTGAGAAATTTGCATAATCTATCCTTACATGTCATGGTGGAGAATAAGGCAACTTGGGAGGCATTAATTGAGGATTCTCCCCCAACGTCATTGAATGAGGATAATTTTTACCTTCACGGATTTTGA

mRNA sequence

ATGGTGGATGGTGGTCGGGTATTAGGAATCTCTCCATTGGATGTAGATAGTGTTGTTGCAGCTAACGAAATCAAATGCAATAACATTGTTATGTATTGTTTGTGGCTTCGTCATCTAAGCGTGTTGAATAGTTATCAGGCACAAAATTGGAGAGAACAACTGCCTACGATTTCTTGGGATGACTCTACATCTTCGTTGTATCATTGTTCAGAAAACTTTCATGGTCTAGAGGCGATGATGACGAAGCAAAAGGTGGGCGATTTCGGAGGTGCAACGACGATGGACTTAAACACCAATTTAGAATTTGTTGAGGCTATCAATCTTTATTGTATTGAGATTCGCCAACATGATTTGAGAAATTTGCATAATCTATCCTTACATGTCATGGTGGAGAATAAGGCAACTTGGGAGGCATTAATTGAGGATTCTCCCCCAACGTCATTGAATGAGGATAATTTTTACCTTCACGGATTTTGA

Coding sequence (CDS)

ATGGTGGATGGTGGTCGGGTATTAGGAATCTCTCCATTGGATGTAGATAGTGTTGTTGCAGCTAACGAAATCAAATGCAATAACATTGTTATGTATTGTTTGTGGCTTCGTCATCTAAGCGTGTTGAATAGTTATCAGGCACAAAATTGGAGAGAACAACTGCCTACGATTTCTTGGGATGACTCTACATCTTCGTTGTATCATTGTTCAGAAAACTTTCATGGTCTAGAGGCGATGATGACGAAGCAAAAGGTGGGCGATTTCGGAGGTGCAACGACGATGGACTTAAACACCAATTTAGAATTTGTTGAGGCTATCAATCTTTATTGTATTGAGATTCGCCAACATGATTTGAGAAATTTGCATAATCTATCCTTACATGTCATGGTGGAGAATAAGGCAACTTGGGAGGCATTAATTGAGGATTCTCCCCCAACGTCATTGAATGAGGATAATTTTTACCTTCACGGATTTTGA

Protein sequence

MVDGGRVLGISPLDVDSVVAANEIKCNNIVMYCLWLRHLSVLNSYQAQNWREQLPTISWDDSTSSLYHCSENFHGLEAMMTKQKVGDFGGATTMDLNTNLEFVEAINLYCIEIRQHDLRNLHNLSLHVMVENKATWEALIEDSPPTSLNEDNFYLHGF
Homology
[Close]
BLAST of MS027300 vs. NCBI nr
Match: XP_022159860.1 (uncharacterized protein LOC111026150 [Momordica charantia])

HSP 1 Score: 94.0 bits (232), Expect = 1.3e-15
Identity = 62/141 (43.97%), Postives = 73/141 (51.77%), Query Frame = 0 

Query: 1   MVDGGRVLGISPLDVDSVVAANEIKCNNIVMYCLWLRHLSVLNSYQAQNWREQLPTISWD 60
           M D   +  ISPLD +S V  ++IK  NIVMY  W RH  VL SY AQNW          
Sbjct: 1   MADSDWMSEISPLDANSAVVVDKIKA-NIVMYGPWHRHHDVLKSYHAQNW---------- 60

Query: 61  DSTSSLYHCSENFHGLEAMMTKQKVGDFGGATTMDLNTNLEFVEAINLYCIEIR-QHDLR 120
                              M +QKVGD GGA T+  NT L  VE INL C+EI  QHD  
Sbjct: 61  -----------------TRMMEQKVGDDGGAATIKSNTVLGSVEVINLNCLEIPCQHDFG 113

Query: 121 NLHNLSLHVMVENKATWEALI 141
           NL N SL V VE+K T++ +I
Sbjct: 121 NLSNPSLPVTVEDKTTFDTII 113

[Close]
BLAST of MS027300 vs. ExPASy TrEMBL
Match: A0A6J1DZZ2 (uncharacterized protein LOC111026150 OS=Momordica charantia OX=3673 GN=LOC111026150 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 6.1e-16
Identity = 62/141 (43.97%), Postives = 73/141 (51.77%), Query Frame = 0 

Query: 1   MVDGGRVLGISPLDVDSVVAANEIKCNNIVMYCLWLRHLSVLNSYQAQNWREQLPTISWD 60
           M D   +  ISPLD +S V  ++IK  NIVMY  W RH  VL SY AQNW          
Sbjct: 1   MADSDWMSEISPLDANSAVVVDKIKA-NIVMYGPWHRHHDVLKSYHAQNW---------- 60

Query: 61  DSTSSLYHCSENFHGLEAMMTKQKVGDFGGATTMDLNTNLEFVEAINLYCIEIR-QHDLR 120
                              M +QKVGD GGA T+  NT L  VE INL C+EI  QHD  
Sbjct: 61  -----------------TRMMEQKVGDDGGAATIKSNTVLGSVEVINLNCLEIPCQHDFG 113

Query: 121 NLHNLSLHVMVENKATWEALI 141
           NL N SL V VE+K T++ +I
Sbjct: 121 NLSNPSLPVTVEDKTTFDTII 113

The following BLAST results are available for this feature:
BLAST of MS027300 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022159860.11.3e-1543.97uncharacterized protein LOC111026150 [Momordica charantia][more]
BLAST of MS027300 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS027300 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DZZ26.1e-1643.97uncharacterized protein LOC111026150 OS=Momordica charantia OX=3673 GN=LOC111026... [more]
BLAST of MS027300 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS027300.1MS027300.1mRNA