MS027247 (gene) Bitter gourd (TR) v1

Overview
NameMS027247
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein INVOLVED IN DE NOVO 2-like
Locationscaffold33: 1253541 .. 1253983 (+)
RNA-Seq ExpressionMS027247
SyntenyMS027247
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCGTACCATTTCCCTCATCTTTTTCTTTTGCTCTCACTCTCAGCGTACCCATTTGCGGACCCCTCCCTGACCCTCAATTCGATTTTGTCGCTGCTGTGCCTGTGACTCACTTTTTTGTACACTGTCCAGACTCGCTCCTCGCTCCTCGCTCCAACCCCAACACTTCGATTCGCTCTAAATTCGCGAATTCAATTCCCCTTTTCTCAGCTCAGGGAAGCTCACCAACTCCTTTTTTTTTTCTGCATCAGACGCCTCAGGATTCAGGATTCTGCGATTATTGTCAGGTGATCCATGTTTTGTTCTGCTTTCGAAGGGTTTCTTTTGCTTTTGGGTGATGTTTCGTTTGAATTGGGGTGAATTACTTTAGATTTACCTGGTGTATTTCATGCATGGTTTGACTTCTGTTTCACGAACATTATGCATTTCTTCTTTGAGCTGA

mRNA sequence

ATGCGCGTACCATTTCCCTCATCTTTTTCTTTTGCTCTCACTCTCAGCGTACCCATTTGCGGACCCCTCCCTGACCCTCAATTCGATTTTGTCGCTGCTGTGCCTGTGACTCACTTTTTTGTACACTGTCCAGACTCGCTCCTCGCTCCTCGCTCCAACCCCAACACTTCGATTCGCTCTAAATTCGCGAATTCAATTCCCCTTTTCTCAGCTCAGGGAAGCTCACCAACTCCTTTTTTTTTTCTGCATCAGACGCCTCAGGATTCAGGATTCTGCGATTATTGTCAGATTTACCTGGTGTATTTCATGCATGGTTTGACTTCTGTTTCACGAACATTATGCATTTCTTCTTTGAGCTGA

Coding sequence (CDS)

ATGCGCGTACCATTTCCCTCATCTTTTTCTTTTGCTCTCACTCTCAGCGTACCCATTTGCGGACCCCTCCCTGACCCTCAATTCGATTTTGTCGCTGCTGTGCCTGTGACTCACTTTTTTGTACACTGTCCAGACTCGCTCCTCGCTCCTCGCTCCAACCCCAACACTTCGATTCGCTCTAAATTCGCGAATTCAATTCCCCTTTTCTCAGCTCAGGGAAGCTCACCAACTCCTTTTTTTTTTCTGCATCAGACGCCTCAGGATTCAGGATTCTGCGATTATTGTCAGATTTACCTGGTGTATTTCATGCATGGTTTGACTTCTGTTTCACGAACATTATGCATTTCTTCTTTGAGCTGA

Protein sequence

MRVPFPSSFSFALTLSVPICGPLPDPQFDFVAAVPVTHFFVHCPDSLLAPRSNPNTSIRSKFANSIPLFSAQGSSPTPFFFLHQTPQDSGFCDYCQIYLVYFMHGLTSVSRTLCISSLS
Homology
[Close]
BLAST of MS027247 vs. NCBI nr
Match: XP_022139001.1 (protein INVOLVED IN DE NOVO 2-like [Momordica charantia] >XP_022139002.1 protein INVOLVED IN DE NOVO 2-like [Momordica charantia])

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-19
Identity = 54/81 (66.67%), Postives = 59/81 (72.84%), Query Frame = 0 

Query: 1  MRVPFPSSFSFALTLSVPICGPLPDPQFDFVAAVPVTHFFVHCPDSLLAPRSNPNTSIRS 60
          MRVPFPSSFSFALTLSVPICGPLPDPQFDFVAAVPV HFFVHCPDSLLAP      ++ S
Sbjct: 1  MRVPFPSSFSFALTLSVPICGPLPDPQFDFVAAVPVAHFFVHCPDSLLAPTPTLRFALNS 60

Query: 61 KFANSIPLFSAQGSSPTPFFF 82
          +     P    + +    FFF
Sbjct: 61 RI--QFPFSQLREAHQLLFFF 79

[Close]
BLAST of MS027247 vs. ExPASy TrEMBL
Match: A0A6J1CCT0 (protein INVOLVED IN DE NOVO 2-like OS=Momordica charantia OX=3673 GN=LOC111010041 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.3e-20
Identity = 54/81 (66.67%), Postives = 59/81 (72.84%), Query Frame = 0 

Query: 1  MRVPFPSSFSFALTLSVPICGPLPDPQFDFVAAVPVTHFFVHCPDSLLAPRSNPNTSIRS 60
          MRVPFPSSFSFALTLSVPICGPLPDPQFDFVAAVPV HFFVHCPDSLLAP      ++ S
Sbjct: 1  MRVPFPSSFSFALTLSVPICGPLPDPQFDFVAAVPVAHFFVHCPDSLLAPTPTLRFALNS 60

Query: 61 KFANSIPLFSAQGSSPTPFFF 82
          +     P    + +    FFF
Sbjct: 61 RI--QFPFSQLREAHQLLFFF 79

The following BLAST results are available for this feature:
BLAST of MS027247 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022139001.11.1e-1966.67protein INVOLVED IN DE NOVO 2-like [Momordica charantia] >XP_022139002.1 protein... [more]
BLAST of MS027247 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS027247 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CCT05.3e-2066.67protein INVOLVED IN DE NOVO 2-like OS=Momordica charantia OX=3673 GN=LOC11101004... [more]
BLAST of MS027247 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS027247.1MS027247.1mRNA