MS027244 (gene) Bitter gourd (TR) v1

Overview
NameMS027244
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold33: 952892 .. 953965 (+)
RNA-Seq ExpressionMS027244
SyntenyMS027244
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTTGAGCAGATTCTGCGTTCTTTCTTGTGGAAGGATCGTGAGAGCGGGCGATCAGGGGCTAAGGTGGCATGGTCTGAGGTGTGTATTCCTTTGTGGGGAGGTGGTTTGGGAGTGCGTCACTTGGCTTCTTAGAATTCGGCTGCTTTAATGAAGCTGCTCTGGCTGCTCTTTACGCGGGCTGGCTCTCTATGGATGGCTTGGGTGGAGGCCTAGATTCTTCGAGGGGAATGTATTTGGACTATTCATGTTTCACCTCGCTTCTCTTGGTGTTGGCGGGATATTCTTTCTGTCTGGGATGCTTTTCGGCCTTTGGTTCAGTTTGCGATTGGAGTTGGTCACCGTTGTTTTGTTTGGCATGATGCTTGGCTTCCGGGGGTCCGATTTATCTGAGGTTTGGTGATCGGATTATCAACGATGCTGCAAGCTTGTCCCGGACAAAGGTTTCTTATTTTCTTTTTCCCGATCGTTCGTGGCACTGGCCTCATGGGTCGCCCGATCTTCGTCAGTTGGTCTCTGAGGTTTCATCTGTGCCGGTTTTGGTTGGGAGGGAAGATATACCCATTTGGATTCCAGCGTCGTCGGGTCTTTTTTTAGTGTTGAGTGCGTGGGACGATGTGTTGTGGTCAGCTCAGCCTCCTGTTCCTTGGTTCTCTTTGCTTTGATTCGGTGGGAACATTCCGAAGCATTCTTTCATTGCTTGGTTGGCGGTGCGTTATTGACTTACTATGCGGGATCGCTTATGTCGTTGGGATTCTTCCGTTTGTGTTTCTTATGTGTTTTGTGCTGGCTTTGAGTCCTGTGATCATCTGTTCTTTGAGTGTCCTTCTAGTTGGAAGGTCTGGTCTGTAATGATTGCCTGGGCTGGTTCTTCTCACCGGATTTCATATTGGTATACTGAGCTTGTTGGATTTGTCACATTAGTGTTGAGAAGTCTGCTCGTCGTCATATGTGGCATTTGACATGGACTTCAACTATTTCCTTTATTTGGAGGGAGCGTAATGCTAGAGTTCATGGGTGGGGGTGGTGTGGGACGGTCGCCTTCTACCCTCTTGTGCACTTTGAAAACTGA

mRNA sequence

ATGATGTTGAGCAGATTCTGCGTTCTTTCTTGTGGAAGGATCGTGAGAGCGGGCGATCAGGGGCTAAGGTGGCATGGTCTGAGCTGCTCTGGCTGCTCTTTACGCGGGCTGGCTCTCTATGGATGGCTTGGGTGGAGGCCTAGATTCTTCGAGGGGAATGTATTTGGACTATTCATGTTTCACCTCGCTTCTCTTGGTGTTGGCGGGATATTCTTTCTGTCTGGGATGCTTTTCGGCCTTTGGTTCAGTTTGCGATTGGAGTTGGTCACCGTTGTTTTGTTTGGCATGATGCTTGGCTTCCGGGGGTCCGATTTATCTGAGCTCAGCCTCCTGTTCCTTGGTTCTCTTTGCTTTGATTCGGTGGGAACATTCCGAAGCATTCTTTCATTGCTTGGTTGGCGGTGCGTTATTGACTTACTATGCGGGATCGCTTATGTCGTTGGGATTCTTCCGTTTGTGTTTCTTATGTGTTTTGTGCTGGCTTTGAGTCCTGTGATCATCTGTTCTTTGAGTGTCCTTCTAGTTGGAAGTGTTGAGAAGTCTGCTCGTCGTCATATGTGGCATTTGACATGGACTTCAACTATTTCCTTTATTTGGAGGGAGCGTAATGCTAGAGTTCATGGGTGGGGGTGGTGTGGGACGGTCGCCTTCTACCCTCTTGTGCACTTTGAAAACTGA

Coding sequence (CDS)

ATGATGTTGAGCAGATTCTGCGTTCTTTCTTGTGGAAGGATCGTGAGAGCGGGCGATCAGGGGCTAAGGTGGCATGGTCTGAGCTGCTCTGGCTGCTCTTTACGCGGGCTGGCTCTCTATGGATGGCTTGGGTGGAGGCCTAGATTCTTCGAGGGGAATGTATTTGGACTATTCATGTTTCACCTCGCTTCTCTTGGTGTTGGCGGGATATTCTTTCTGTCTGGGATGCTTTTCGGCCTTTGGTTCAGTTTGCGATTGGAGTTGGTCACCGTTGTTTTGTTTGGCATGATGCTTGGCTTCCGGGGGTCCGATTTATCTGAGCTCAGCCTCCTGTTCCTTGGTTCTCTTTGCTTTGATTCGGTGGGAACATTCCGAAGCATTCTTTCATTGCTTGGTTGGCGGTGCGTTATTGACTTACTATGCGGGATCGCTTATGTCGTTGGGATTCTTCCGTTTGTGTTTCTTATGTGTTTTGTGCTGGCTTTGAGTCCTGTGATCATCTGTTCTTTGAGTGTCCTTCTAGTTGGAAGTGTTGAGAAGTCTGCTCGTCGTCATATGTGGCATTTGACATGGACTTCAACTATTTCCTTTATTTGGAGGGAGCGTAATGCTAGAGTTCATGGGTGGGGGTGGTGTGGGACGGTCGCCTTCTACCCTCTTGTGCACTTTGAAAACTGA

Protein sequence

MMLSRFCVLSCGRIVRAGDQGLRWHGLSCSGCSLRGLALYGWLGWRPRFFEGNVFGLFMFHLASLGVGGIFFLSGMLFGLWFSLRLELVTVVLFGMMLGFRGSDLSELSLLFLGSLCFDSVGTFRSILSLLGWRCVIDLLCGIAYVVGILPFVFLMCFVLALSPVIICSLSVLLVGSVEKSARRHMWHLTWTSTISFIWRERNARVHGWGWCGTVAFYPLVHFEN
Homology
[Close]
BLAST of MS027244 vs. NCBI nr
Match: XP_022149381.1 (uncharacterized protein LOC111017811 [Momordica charantia])

HSP 1 Score: 55.8 bits (133), Expect = 5.4e-04
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 61  HLASLGVGG-IFFLSGMLFGLWFSLRLELVTVVLFGMMLGFRGSDLSE 108
           ++  L VGG IFFLS MLF LWF LRLE+V+VVLFGM LGF  SDLS+
Sbjct: 185 YMGWLYVGGLIFFLSEMLFDLWFDLRLEMVSVVLFGMTLGFWMSDLSK 232

[Close]
BLAST of MS027244 vs. ExPASy TrEMBL
Match: A0A6J1D875 (uncharacterized protein LOC111017811 OS=Momordica charantia OX=3673 GN=LOC111017811 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.6e-04
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 61  HLASLGVGG-IFFLSGMLFGLWFSLRLELVTVVLFGMMLGFRGSDLSE 108
           ++  L VGG IFFLS MLF LWF LRLE+V+VVLFGM LGF  SDLS+
Sbjct: 185 YMGWLYVGGLIFFLSEMLFDLWFDLRLEMVSVVLFGMTLGFWMSDLSK 232

[Close]
BLAST of MS027244 vs. ExPASy TrEMBL
Match: A0A6J1DYP6 (uncharacterized protein LOC111024737 OS=Momordica charantia OX=3673 GN=LOC111024737 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.9e-04
Identity = 20/32 (62.50%), Postives = 25/32 (78.12%), Query Frame = 0 

Query: 177 SVEKSARRHMWHLTWTSTISFIWRERNARVHG 209
           S   S+RRH+W L WTST+S +WRERN R+HG
Sbjct: 550 SAGSSSRRHVWRLAWTSTVSLLWRERNLRIHG 581

The following BLAST results are available for this feature:
BLAST of MS027244 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022149381.15.4e-0468.75uncharacterized protein LOC111017811 [Momordica charantia][more]
BLAST of MS027244 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS027244 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D8752.6e-0468.75uncharacterized protein LOC111017811 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A6J1DYP65.9e-0462.50uncharacterized protein LOC111024737 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
BLAST of MS027244 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS027244.1MS027244.1mRNA