MS027162 (gene) Bitter gourd (TR) v1

Overview
NameMS027162
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionG-patch domain-containing protein
Locationscaffold197: 1116471 .. 1117662 (+)
RNA-Seq ExpressionMS027162
SyntenyMS027162
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCACGGAGACTCAGACCCGTGTGGGTGGATCCCACATGAGAACTGCATTTGTGACCATCGATCTTCCAACGGGCGATGGTTATCCGTCGGATCAAACAGATGACAAGACAGGTGAGTGGTCAAAAGTGATAGCTTGATTAGGCTTAGCTCATTGATCTTTCCTCTTGTTTCTCTTTTCTGCAAACTCTGCATGGAAATGCACTGAGATGGAAACAGGGGTTGTGTGCTTGAAAGAGAGAGAATGCGAAAAGAAATGAAGAGAAAAAAAGAGAAAAAAGAGGCAAAAGAAAAGCAAGAAAAAGAAAAAGAAAGATGAGGGGAACGTTGTGGCCGTGGAGCCAATGTATAGGGGAAAGTTCTAAAAGTTCGTGATTTATGAAAAAGAAAGATAAAATCCTCTTTTCCTTGGGGTTATGGTCAGGAATTGAATGATCTCGTCGGCTATATGGGACTTGAATAAGAATGAGACAAACCAAAATGGAATGGTTGAGAATGAAAGAGATGCTTTTTTAGAGAGCGAGTGAATAGAATAGATGGGTTCTTTTTTCTCGAGGTAAATAGAAGAGATGCATTTAATAATCATCATGGGATGACCTAGTGGTCAATAAGGGCCAATGTTAATAGGAAAGAGCTCAAATCATGGTGACTACGTAGGATTTAATATATTACGAATTTCCTTATCAACCAAATAGAGTAGGGTCAGACGGTTAGCCTGTGATTAGTTGAGCTGTGTGCAAGCTGGTCCAGTCAAATGCGGTTGCTAGCATCGAAGAGAGCCATCATAGACGAGAAAGTGGGAGTTTGAACTTGGCGCCCTGAATCAGGGTCTTAGCTACTTGCTTTCGAACGATCTTGAAGAGATAGGGGGATTGGCCCCAATTCGACTGCTGTTAGATTGATCATCAAATGATGGGTATAGCCCGAGTGTAAATGTAAAAGAACCATTGAGAATGACGTTTGGAAGATGAAGCCTTGCCCGATTTTAGTGATGTCGTCTTTGTTAAGGAAATGTTCCGATCAATGCGCCATCTCCCTGGATCAGGACTCGGCCGGTGTCACCAAGAAATCATGGAGCCAATTCATCTCCAGGCGATTGAGCCACCTTTTGGGTTGCCCTCGATTGTTCCAGAGAAAAGGATCATGGCACACGGATATATAAAAAGAAAAGAAAAGAATAGAGGCATTTAG

mRNA sequence

ATGTCCACGGAGACTCAGACCCGTGTGGGTGGATCCCACATGAGAACTGCATTTGTGACCATCGATCTTCCAACGGGCGATGGTTATCCGTCGGATCAAACAGATGACAAGACAGATGAAGCCTTGCCCGATTTTAGTGATGTCGTCTTTGTTAAGGAAATGTTCCGATCAATGCGCCATCTCCCTGGATCAGGACTCGGCCGGTGTCACCAAGAAATCATGGAGCCAATTCATCTCCAGGCGATTGAGCCACCTTTTGGGTTGCCCTCGATTGTTCCAGAGAAAAGGATCATGGCACACGGATATATAAAAAGAAAAGAAAAGAATAGAGGCATTTAG

Coding sequence (CDS)

ATGTCCACGGAGACTCAGACCCGTGTGGGTGGATCCCACATGAGAACTGCATTTGTGACCATCGATCTTCCAACGGGCGATGGTTATCCGTCGGATCAAACAGATGACAAGACAGATGAAGCCTTGCCCGATTTTAGTGATGTCGTCTTTGTTAAGGAAATGTTCCGATCAATGCGCCATCTCCCTGGATCAGGACTCGGCCGGTGTCACCAAGAAATCATGGAGCCAATTCATCTCCAGGCGATTGAGCCACCTTTTGGGTTGCCCTCGATTGTTCCAGAGAAAAGGATCATGGCACACGGATATATAAAAAGAAAAGAAAAGAATAGAGGCATTTAG

Protein sequence

MSTETQTRVGGSHMRTAFVTIDLPTGDGYPSDQTDDKTDEALPDFSDVVFVKEMFRSMRHLPGSGLGRCHQEIMEPIHLQAIEPPFGLPSIVPEKRIMAHGYIKRKEKNRGI
Homology
[Close]
BLAST of MS027162 vs. NCBI nr
Match: EEF25156.1 (conserved hypothetical protein, partial [Ricinus communis])

HSP 1 Score: 84.3 bits (207), Expect = 7.1e-13
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0 

Query: 42  LPDFSDVVFVKEMFRSMRHLPGSGLGRCHQEIMEPIHLQAIEPPFGL 89
           LP+FSD VFV EMFRSMR+LPGSGLGR HQ I+EPIH+QAIEPPFGL
Sbjct: 77  LPNFSDNVFVGEMFRSMRYLPGSGLGRHHQGIVEPIHVQAIEPPFGL 123

[Close]
BLAST of MS027162 vs. NCBI nr
Match: EEF27092.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 67.8 bits (164), Expect = 6.9e-08
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 54 MFRSMRHLPGSGLGRCHQEIMEPIHLQAIEPPFGL 89
          MFRSMR+LPGSGLGR HQ I+EPIH+QAIEPPFGL
Sbjct: 1  MFRSMRYLPGSGLGRHHQGIVEPIHVQAIEPPFGL 35

[Close]
BLAST of MS027162 vs. ExPASy TrEMBL
Match: B9TG58 (G-patch domain-containing protein (Fragment) OS=Ricinus communis OX=3988 GN=RCOM_2070490 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.4e-13
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0 

Query: 42  LPDFSDVVFVKEMFRSMRHLPGSGLGRCHQEIMEPIHLQAIEPPFGL 89
           LP+FSD VFV EMFRSMR+LPGSGLGR HQ I+EPIH+QAIEPPFGL
Sbjct: 77  LPNFSDNVFVGEMFRSMRYLPGSGLGRHHQGIVEPIHVQAIEPPFGL 123

[Close]
BLAST of MS027162 vs. ExPASy TrEMBL
Match: B9TAM0 (G-patch domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_2021640 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.3e-08
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 54 MFRSMRHLPGSGLGRCHQEIMEPIHLQAIEPPFGL 89
          MFRSMR+LPGSGLGR HQ I+EPIH+QAIEPPFGL
Sbjct: 1  MFRSMRYLPGSGLGRHHQGIVEPIHVQAIEPPFGL 35

The following BLAST results are available for this feature:
BLAST of MS027162 vs. NCBI nr
Match NameE-valueIdentityDescription
EEF25156.17.1e-1382.98conserved hypothetical protein, partial [Ricinus communis][more]
EEF27092.16.9e-0885.71conserved hypothetical protein [Ricinus communis][more]
BLAST of MS027162 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS027162 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
B9TG583.4e-1382.98G-patch domain-containing protein (Fragment) OS=Ricinus communis OX=3988 GN=RCOM... [more]
B9TAM03.3e-0885.71G-patch domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_2021640 PE... [more]
BLAST of MS027162 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS027162.1MS027162.1mRNA